Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 0.0e+00 1404.4 708 100.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 0.0e+00 1083.2 705 74.3
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 8.7e-304 1046.6 708 72.9
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 5.9e-284 980.7 855 60.5
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 6.3e-270 934.1 696 65.8
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 5.5e-266 921.0 694 65.6
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 1.0e-264 916.8 702 66.0
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 2.0e-263 912.5 690 65.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 2.8e-257 892.1 661 66.6
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 8.9e-256 887.1 690 61.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 3.7e-254 881.7 709 62.6
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 3.7e-254 881.7 702 63.1
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 8.3e-254 880.6 694 62.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 4.6e-252 874.8 691 61.6
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.3e-251 873.2 692 62.3
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.1e-250 870.2 692 61.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 2.5e-250 869.0 695 62.3
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 5.6e-250 867.8 694 61.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.4e-248 863.2 688 62.2
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.2e-247 860.1 709 60.9
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.4e-247 858.6 690 60.0
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 5.8e-247 857.8 694 63.8
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.0e-244 849.4 703 60.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.7e-244 849.0 688 61.0
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.0e-243 847.0 696 60.3
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.5e-242 842.4 698 63.8
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 9.5e-242 840.5 692 60.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.6e-241 839.7 695 61.0
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.7e-241 838.2 701 61.5
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 8.1e-241 837.4 692 60.5
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.3e-240 835.9 737 56.7
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 5.2e-240 834.7 702 62.1
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.0e-235 818.9 630 62.9
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.9e-235 818.5 705 60.3
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.1e-228 796.2 703 56.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.7e-228 795.8 693 59.9
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 6.0e-228 794.7 694 57.3
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 3.9e-227 792.0 703 57.8
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 1.9e-226 789.6 707 56.2
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 4.4e-223 778.5 713 55.1
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.8e-222 775.4 729 55.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.9e-219 765.4 695 58.1
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 3.9e-219 765.4 699 54.5
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-218 763.1 717 55.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.5e-218 762.7 701 56.3
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 5.6e-218 761.5 706 54.5
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 7.3e-218 761.1 699 55.8
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 7.3e-218 761.1 708 56.8
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.3e-217 760.4 695 56.1
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 1.6e-217 760.0 699 56.9
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 3.6e-217 758.8 705 56.5
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.6e-217 758.8 718 55.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 8.1e-217 757.7 705 53.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 1.8e-216 756.5 703 56.2
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 4.0e-216 755.4 704 55.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 6.9e-216 754.6 712 53.5
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 9.0e-216 754.2 694 55.2
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.2e-215 753.8 710 55.8
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.4e-215 752.3 718 54.6
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.4e-213 746.1 719 54.8
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 5.4e-213 745.0 699 54.4
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.7e-211 740.0 734 54.1
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 6.6e-211 738.0 705 54.6
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 1.9e-210 736.5 704 55.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.9e-210 736.5 719 54.8
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 3.3e-210 735.7 699 55.8
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.8e-209 732.6 719 55.2
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 3.6e-209 732.3 769 50.8
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 1.1e-208 730.7 734 53.5
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.8e-206 722.2 720 54.9
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 7.1e-205 718.0 710 52.5
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 2.1e-204 716.5 698 53.9
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 9.6e-202 707.6 706 53.5
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 1.5e-199 700.3 654 55.7
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.3e-194 682.2 711 49.4
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.1e-188 663.3 604 55.3
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.3e-185 654.1 721 50.9
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 2.8e-185 652.9 662 52.9
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.2e-183 647.5 647 53.2
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.5e-183 647.1 700 48.3
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 8.8e-179 631.3 753 48.3
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.0e-171 607.8 693 47.0
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 3.5e-167 592.8 717 46.6
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-165 587.8 747 44.7
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.6e-156 557.4 423 66.2
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.7e-156 556.6 590 51.9
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.8e-152 543.9 451 61.6
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 7.0e-152 542.0 690 44.3
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.1e-144 518.1 688 41.6
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 2.7e-143 513.5 455 55.6
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 3.8e-142 509.6 564 48.4
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.8e-140 503.4 649 44.2
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.6e-140 503.1 476 56.9
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 8.0e-140 501.9 376 64.6
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 6.0e-127 459.1 654 39.6
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.6e-118 429.1 333 64.3
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.4e-112 411.4 598 38.3
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 2.7e-103 380.6 260 67.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.5e-101 374.0 541 37.9
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 1.1e-96 358.6 319 56.1
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-83 315.1 354 44.6
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.6e-82 310.8 271 58.3
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 3.9e-70 270.4 277 53.8
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 7.9e-63 246.1 261 48.7
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 2.3e-62 244.6 226 54.4
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-61 241.9 205 59.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.3e-61 240.7 296 48.6
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.7e-60 238.4 257 48.6
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 3.4e-58 230.7 197 60.4
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-56 225.3 333 38.7
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 2.0e-53 214.9 513 31.4
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 7.7e-42 176.4 236 41.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.5e-40 171.4 158 57.0
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.5e-40 170.2 305 35.1
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-36 157.1 289 35.3
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.1e-35 154.5 328 32.6
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.1e-35 154.1 159 49.7
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.9e-34 150.2 166 46.4
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.0e-33 149.4 184 42.4
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.6e-31 142.1 87 70.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-31 142.1 327 32.7
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-30 138.7 329 32.2
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-30 138.7 196 39.3
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.0e-29 135.2 130 55.4
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-27 127.5 277 33.9
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-26 125.9 345 30.4
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.7e-26 124.8 143 42.7
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.0e-25 122.9 482 25.1
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 1.0e-25 122.9 439 24.6
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.3e-25 122.5 146 47.3
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.6e-25 120.2 158 44.3
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.1e-23 113.6 104 60.6
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-21 109.0 76 69.7
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-21 107.5 76 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 7.5e-21 106.7 388 26.3
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-20 105.5 76 68.4
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-20 104.8 137 43.1
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-19 102.8 245 31.4
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.2e-19 99.8 76 65.8
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.0e-17 96.3 76 59.2
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 2.3e-17 95.1 133 51.9
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.9e-16 92.0 56 78.6
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.6e-15 87.8 66 69.7
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.7e-15 87.4 62 62.9
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 1.1e-14 86.3 98 49.0
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.3e-14 85.1 56 76.8
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 3.1e-14 84.7 129 47.3
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.8e-14 83.6 84 47.6
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 8.9e-14 83.2 130 35.4
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 3.4e-13 81.3 74 56.8
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.4e-13 80.9 173 32.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 4.9e-12 77.4 66 60.6
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 3.9e-09 67.8 51 54.9
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.6e-07 62.4 175 26.9
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.8e-07 61.6 41 68.3
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.7e-07 60.8 41 68.3
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.7e-07 60.8 47 57.4


User provided reference genes

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