Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 4.3e-190 667.9 364 100.0
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.1e-127 460.7 371 75.2
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 2.3e-122 443.0 371 73.3
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 6.6e-114 414.8 369 70.5
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 9.6e-113 411.0 375 69.3
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.4e-103 380.6 367 65.4
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.0e-102 376.7 369 64.8
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 3.8e-101 372.5 360 65.0
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 6.4e-101 371.7 369 64.5
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.6e-99 367.1 370 63.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.7e-99 366.3 367 63.5
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 3.5e-99 365.9 338 67.2
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.0e-98 364.4 331 67.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 5.1e-98 362.1 364 62.1
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 8.7e-98 361.3 310 71.6
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 7.4e-97 358.2 368 62.5
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.1e-96 354.8 367 61.6
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 8.1e-96 354.8 366 62.3
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 8.1e-96 354.8 370 61.4
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 4.0e-95 352.4 329 66.0
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.2e-94 350.9 331 65.0
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.9e-93 346.3 369 62.1
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 1.1e-92 344.4 367 61.9
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-91 340.9 373 61.1
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 1.2e-91 340.9 368 60.9
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.5e-91 339.3 382 58.4
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 2.3e-90 336.7 371 60.6
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.3e-90 336.7 366 59.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.9e-90 335.9 346 60.1
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 6.7e-90 335.1 346 61.8
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 6.7e-90 335.1 349 62.2
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 5.7e-89 332.0 355 60.3
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 7.4e-89 331.6 362 57.7
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 1.3e-88 330.9 369 59.6
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 1.3e-88 330.9 357 59.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.7e-88 329.3 362 57.7
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 6.2e-88 328.6 349 61.6
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 6.2e-88 328.6 368 57.3
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 3.1e-87 326.2 351 61.3
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 6.9e-87 325.1 369 59.9
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-86 324.3 372 59.7
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.0e-86 323.6 372 59.4
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 8.4e-85 318.2 369 56.1
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.4e-84 317.4 347 59.7
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.5e-84 316.6 366 58.2
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.7e-83 313.2 349 60.7
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 1.8e-82 310.5 392 54.8
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.3e-82 310.1 360 55.0
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.0e-82 309.7 351 58.4
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 1.9e-81 307.0 369 55.8
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 9.7e-81 304.7 369 58.0
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.3e-80 304.3 298 61.7
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.7e-80 302.8 364 56.6
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.1e-79 301.2 336 55.4
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.4e-79 300.8 373 57.4
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.4e-79 300.8 345 58.3
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.8e-79 300.4 372 56.7
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.8e-79 300.4 367 54.0
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.9e-79 298.5 357 53.2
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 9.0e-79 298.1 368 54.6
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 9.0e-79 298.1 349 55.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 9.0e-79 298.1 368 54.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.5e-78 297.4 371 56.1
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 2.0e-78 297.0 333 59.5
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.0e-77 294.7 367 53.1
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 1.3e-77 294.3 360 54.2
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 1.3e-77 294.3 337 58.8
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.9e-77 293.1 380 54.2
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 6.5e-77 292.0 353 55.2
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 6.5e-77 292.0 349 55.6
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.2e-76 289.7 372 55.4
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 5.5e-76 288.9 366 52.5
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 7.2e-76 288.5 332 55.4
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 7.2e-76 288.5 354 53.7
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 1.6e-75 287.3 320 59.7
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 2.7e-75 286.6 365 55.1
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 3.6e-75 286.2 374 54.5
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 7.9e-75 285.0 373 54.7
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 3.0e-74 283.1 376 52.9
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 5.1e-74 282.3 351 54.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 8.8e-74 281.6 343 53.9
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 1.1e-73 281.2 381 54.6
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.5e-73 280.8 347 53.6
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 2.5e-73 280.0 326 57.7
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 4.3e-73 279.3 367 50.4
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.2e-72 276.9 386 49.7
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.8e-72 276.6 364 52.2
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 4.8e-72 275.8 316 53.8
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.1e-71 274.6 407 51.6
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 1.4e-71 274.2 377 51.5
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.0e-70 270.4 351 53.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.0e-70 270.4 363 51.2
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 3.4e-70 269.6 348 52.0
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.5e-70 269.2 373 52.8
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 8.5e-69 265.0 344 52.6
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.5e-68 263.5 354 54.5
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 9.4e-68 261.5 386 50.0
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 2.7e-67 260.0 366 50.0
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 1.0e-66 258.1 366 49.5
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.0e-66 258.1 345 51.6
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-66 258.1 360 52.8
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 1.1e-65 254.6 380 49.7
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 1.7e-64 250.8 367 50.7
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 8.2e-64 248.4 365 48.8
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-62 243.4 343 52.8
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 7.7e-62 241.9 345 50.1
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 5.5e-60 235.7 312 51.9
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.6e-57 226.9 365 46.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.7e-56 223.0 318 53.1
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 1.1e-55 221.5 384 45.8
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.4e-55 220.3 366 44.5
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 2.0e-54 217.2 328 48.5
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 5.9e-54 215.7 301 49.5
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 8.5e-53 211.8 348 48.3
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.7e-51 206.8 411 41.1
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 2.6e-49 200.3 329 43.2
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 8.3e-48 195.3 330 43.0
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 1.4e-47 194.5 348 44.0
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 3.1e-47 193.4 319 45.1
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 7.7e-46 188.7 317 43.2
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.9e-44 184.1 281 48.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 7.2e-44 182.2 410 39.0
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.7e-43 180.3 357 40.6
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 3.0e-42 176.8 399 39.6
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 4.0e-42 176.4 248 49.2
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 5.2e-42 176.0 398 38.9
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 5.2e-42 176.0 398 38.9
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 5.2e-42 176.0 339 42.2
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.5e-41 174.5 351 41.3
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 4.9e-40 169.5 322 41.3
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.1e-39 168.3 343 40.8
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 9.2e-31 138.7 184 51.6
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 5.2e-26 122.9 378 33.6
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.5e-12 78.2 189 31.2
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 8.1e-11 72.4 198 27.8
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.8e-10 71.2 74 56.8
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 3.1e-10 70.5 183 33.9
CARHR276330 Cardamine hirsuta HOM05D005535 ORTHO05D018759 8.9e-10 68.9 187 35.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.2e-09 68.6 116 33.6
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.5e-09 68.2 116 33.6
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 2.6e-09 67.4 76 42.1
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 3.4e-09 67.0 179 31.3
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 4.4e-09 66.6 221 29.0
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 5.8e-09 66.2 222 30.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 5.8e-09 66.2 227 28.2
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 1.7e-08 64.7 94 35.1
Potri.017G142966 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.7e-08 64.7 65 60.0
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.7e-08 64.7 224 28.1
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.9e-08 63.9 150 30.7
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 4.9e-08 63.2 82 36.6
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 4.9e-08 63.2 172 30.8
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 4.9e-08 63.2 224 29.9
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 4.9e-08 63.2 191 28.8
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 6.4e-08 62.8 247 27.9
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 6.4e-08 62.8 107 31.8
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 1.1e-07 62.0 174 28.7
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.4e-07 61.6 230 28.3
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.9e-07 61.2 214 24.8
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 1.9e-07 61.2 165 27.9
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.9e-07 61.2 262 27.5
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.9e-07 61.2 267 24.0
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 3.2e-07 60.5 187 29.4
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 3.2e-07 60.5 176 29.5
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 4.1e-07 60.1 36 80.6
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 5.4e-07 59.7 163 31.3
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 5.4e-07 59.7 125 28.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 7.1e-07 59.3 266 25.6
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 1.2e-06 58.5 118 32.2
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 1.2e-06 58.5 259 27.4
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.6e-06 58.2 282 25.5
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.1e-06 57.8 154 27.3
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 2.7e-06 57.4 169 29.0
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 3.5e-06 57.0 193 26.4
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 3.5e-06 57.0 178 27.5
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 6.0e-06 56.2 157 29.3
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 7.8e-06 55.8 226 27.4
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 7.8e-06 55.8 230 24.8


User provided reference genes

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