Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p013804 Quercus lobata HOM05D000938 ORTHO05D031099 2.1e-58 228.8 112 100.0
QL10p013755 Quercus lobata HOM05D000938 ORTHO05D001451 1.3e-55 219.5 112 96.4
QL10p013718 Quercus lobata HOM05D000938 ORTHO05D001451 1.9e-35 152.5 113 69.0
QL10p013728 Quercus lobata HOM05D000938 ORTHO05D001451 1.1e-30 136.7 115 65.2
Rhsim08G0167100 Rhododendron simsii HOM05D000938 ORTHO05D001451 1.3e-23 113.2 112 51.8
CAN.G628.65 Capsicum annuum HOM05D000938 ORTHO05D001451 2.2e-23 112.5 107 50.5
MSTRG.23074 Avicennia marina HOM05D000938 ORTHO05D001451 6.3e-23 110.9 100 50.0
Rhsim08G0167000 Rhododendron simsii HOM05D000938 ORTHO05D001451 6.3e-23 110.9 108 52.8
Nitab4.5_0002101g0050 Nicotiana tabacum HOM05D000938 ORTHO05D001451 8.2e-23 110.5 109 50.5
Sabra12G0053200 Salix brachista HOM05D000938 ORTHO05D001451 8.2e-23 110.5 113 51.3
EL10Ac5g10855 Beta vulgaris HOM05D000938 ORTHO05D001451 1.4e-22 109.8 113 54.0
Nitab4.5_0000003g0270 Nicotiana tabacum HOM05D000938 ORTHO05D001451 1.4e-22 109.8 109 48.6
Cpa.g.sc35.21 Carica papaya HOM05D000938 ORTHO05D001451 3.1e-22 108.6 112 50.9
Cfa019056 Carpinus fangiana HOM05D000938 ORTHO05D001451 4.1e-22 108.2 102 58.8
Cfa019057 Carpinus fangiana HOM05D000938 ORTHO05D001451 4.1e-22 108.2 102 58.8
Cc04_g16220 Coffea canephora HOM05D000938 ORTHO05D001451 4.1e-22 108.2 110 50.9
Potri.012G074700 Populus trichocarpa HOM05D000938 ORTHO05D001451 4.1e-22 108.2 113 51.3
Haze_07425 Corylus avellana HOM05D000938 ORTHO05D001451 1.2e-21 106.7 102 58.8
Hma1.2p1_0002F.1_g002930 Hydrangea macrophylla HOM05D000938 ORTHO05D001451 1.2e-21 106.7 99 53.5
Atru.chr9.2387 Acer truncatum HOM05D000938 ORTHO05D001451 1.6e-21 106.3 98 54.1
TWI39G0860 Tripterygium wilfordii HOM05D000938 ORTHO05D001451 2.0e-21 105.9 108 50.0
CSS0044008 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D001451 2.6e-21 105.5 118 51.7
Ciclev10000326m.g Citrus clementina HOM05D000938 ORTHO05D001451 2.6e-21 105.5 100 54.0
Sc04g0002190 Simmondsia chinensis HOM05D000938 ORTHO05D001451 3.5e-21 105.1 107 48.6
Lj1g0026905 Lotus japonicus HOM05D000938 ORTHO05D001451 1.0e-20 103.6 113 49.6
vmacro19349 Vaccinium macrocarpon HOM05D000938 ORTHO05D001451 1.0e-20 103.6 112 50.9
Potri.015G069600 Populus trichocarpa HOM05D000938 ORTHO05D001451 1.7e-20 102.8 113 47.8
Sopen06g027580 Solanum pennellii HOM05D000938 ORTHO05D001451 2.2e-20 102.4 109 46.8
Ah.02g112840 Amaranthus hybridus HOM05D000938 ORTHO05D001451 3.8e-20 101.7 107 46.7
Manes.06G099600 Manihot esculenta HOM05D000938 ORTHO05D001451 3.8e-20 101.7 112 46.4
Hund09400 Selenicereus undatus HOM05D000938 ORTHO05D001451 3.8e-20 101.7 113 48.7
Solyc06g071280.4 Solanum lycopersicum HOM05D000938 ORTHO05D001451 3.8e-20 101.7 109 46.8
Actinidia37691 Actinidia chinensis HOM05D000938 ORTHO05D001451 5.0e-20 101.3 112 46.4
Oeu045354.1 Olea europaea HOM05D000938 ORTHO05D001451 5.0e-20 101.3 105 46.7
Dinv13126 Davidia involucrata HOM05D000938 ORTHO05D001451 6.5e-20 100.9 102 50.0
vmacro19350 Vaccinium macrocarpon HOM05D000938 ORTHO05D001451 8.5e-20 100.5 111 50.5
Lj1g0027652 Lotus japonicus HOM05D000938 ORTHO05D001451 1.9e-19 99.4 111 52.3
Phvul.009G183100 Phaseolus vulgaris HOM05D000938 ORTHO05D001451 2.5e-19 99.0 115 47.8
TAR622G0614 Trochodendron aralioides HOM05D000938 ORTHO05D001451 2.5e-19 99.0 98 49.0
Lalb_Chr23g0273061 Lupinus albus HOM05D000938 ORTHO05D001451 3.2e-19 98.6 114 50.0
VMungo1309G2062 Vigna mungo HOM05D000938 ORTHO05D001451 3.2e-19 98.6 115 47.8
SalBow5G5049 Salvia bowleyana HOM05D000938 ORTHO05D001451 4.2e-19 98.2 101 44.6
SalBow5G5397 Salvia bowleyana HOM05D000938 ORTHO05D001451 4.2e-19 98.2 101 44.6
CSS0034617 Camellia sinensis var. sinensis HOM05D000938 ORTHO05D001451 5.5e-19 97.8 118 50.8
AUR62008298 Chenopodium quinoa HOM05D000938 ORTHO05D001451 5.5e-19 97.8 106 47.2
Psat3g063440 Pisum sativum HOM05D000938 ORTHO05D001451 5.5e-19 97.8 97 53.6
Nn4g22948 Nelumbo nucifera HOM05D000938 ORTHO05D001451 7.2e-19 97.4 98 51.0
Ciclev10000629m.g Citrus clementina HOM05D000938 ORTHO05D001451 9.4e-19 97.1 100 51.0
TPR.G19419 Trifolium pratense HOM05D000938 ORTHO05D001451 9.4e-19 97.1 111 48.6
Sabra15G0093800 Salix brachista HOM05D000938 ORTHO05D001451 1.6e-18 96.3 113 45.1
AUR62031060 Chenopodium quinoa HOM05D000938 ORTHO05D001451 2.7e-18 95.5 106 46.2
Ciclev10019035m.g Citrus clementina HOM05D000938 ORTHO05D001451 2.7e-18 95.5 100 50.0
Aqoxy3G03148 Aquilegia oxysepala HOM05D000938 ORTHO05D001451 3.6e-18 95.1 112 44.6
Ca_02974_v3 Cicer arietinum L. HOM05D000938 ORTHO05D001451 4.7e-18 94.7 102 49.0
TAR374G0136 Trochodendron aralioides HOM05D000938 ORTHO05D001451 8.0e-18 94.0 99 46.5
Haze_07424 Corylus avellana HOM05D000938 ORTHO05D001451 1.4e-17 93.2 102 53.9
Lalb_Chr08g0236121 Lupinus albus HOM05D000938 ORTHO05D001451 3.0e-17 92.0 90 54.4
arahy.Tifrunner.gnm1.ann1.R5RNX8 Arachis hypogaea HOM05D000938 ORTHO05D001451 4.0e-17 91.7 105 49.5
Cfa019054 Carpinus fangiana HOM05D000938 ORTHO05D001451 4.0e-17 91.7 103 55.3
arahy.Tifrunner.gnm1.ann1.A2IS88 Arachis hypogaea HOM05D000938 ORTHO05D001451 6.7e-17 90.9 101 50.5
arahy.Tifrunner.gnm1.ann1.A0TJ2P Arachis hypogaea HOM05D000938 ORTHO05D001451 8.8e-17 90.5 101 50.5
Manes.14G071500 Manihot esculenta HOM05D000938 ORTHO05D001451 8.8e-17 90.5 112 41.1
Migut.I00091 Erythranthe guttata HOM05D000938 ORTHO05D001451 2.0e-16 89.4 101 43.6
Medtr3g079340 Medicago truncatula HOM05D000938 ORTHO05D001451 2.0e-16 89.4 97 49.5
Duzib068G0327 Durio zibethinus HOM05D000938 ORTHO05D001451 3.3e-16 88.6 122 45.1
Glyma.04G177700 Glycine max HOM05D000938 ORTHO05D001451 4.4e-16 88.2 115 43.5
CiPaw.11G033100 Carya illinoinensis HOM05D000938 ORTHO05D001451 5.7e-16 87.8 113 46.0
Glyma.06G187400 Glycine max HOM05D000938 ORTHO05D001451 5.7e-16 87.8 101 47.5
MD06G1182800 Malus domestica HOM05D000938 ORTHO05D001451 5.7e-16 87.8 125 40.0
Lj5A120T55 Lonicera japonica HOM05D000938 ORTHO05D001451 7.5e-16 87.4 104 44.2
arahy.Tifrunner.gnm1.ann1.XF1RPZ Arachis hypogaea HOM05D000938 ORTHO05D001451 9.7e-16 87.0 105 46.7
Gohir.A12G199900 Gossypium hirsutum HOM05D000938 ORTHO05D001451 9.7e-16 87.0 108 49.1
Glyma.06G187200 Glycine max HOM05D000938 ORTHO05D001451 1.3e-15 86.7 100 49.0
Gorai.008G217600 Gossypium raimondii HOM05D000938 ORTHO05D001451 1.7e-15 86.3 108 49.1
DCAR_022752 Daucus carota HOM05D000938 ORTHO05D001451 2.2e-15 85.9 103 40.8
Lsat_1_v5_gn_1_11300 Lactuca sativa HOM05D000938 ORTHO05D001451 2.2e-15 85.9 107 44.9
CsaV3_1G001870 Cucumis sativus L. HOM05D000938 ORTHO05D001451 2.8e-15 85.5 100 50.0
Nn3g20698 Nelumbo nucifera HOM05D000938 ORTHO05D001451 2.8e-15 85.5 99 47.5
PGSC0003DMG400033029 Solanum tuberosum HOM05D000938 ORTHO05D001451 2.8e-15 85.5 88 48.9
Medtr3g078633 Medicago truncatula HOM05D000938 ORTHO05D001451 4.8e-15 84.7 108 46.3
arahy.Tifrunner.gnm1.ann1.V6P520 Arachis hypogaea HOM05D000938 ORTHO05D001451 6.3e-15 84.3 105 47.6
Gohir.D12G202600 Gossypium hirsutum HOM05D000938 ORTHO05D001451 8.2e-15 84.0 108 48.1
GSVIVG01007836001 Vitis vinifera HOM05D000359 ORTHO05D001451 8.2e-15 84.0 110 38.2
Sed0023408 Sechium edule HOM05D000938 ORTHO05D001451 1.1e-14 83.6 100 48.0
COL.COLO4_05626 Corchorus olitorius HOM05D000938 ORTHO05D001451 1.4e-14 83.2 105 47.6
CiPaw.11G033300 Carya illinoinensis HOM05D000938 ORTHO05D001451 1.8e-14 82.8 113 45.1
CiPaw.11G033500 Carya illinoinensis HOM05D000938 ORTHO05D001451 1.8e-14 82.8 113 45.1
VMungo1309G1144 Vigna mungo HOM05D000938 ORTHO05D001451 1.8e-14 82.8 90 51.1
arahy.Tifrunner.gnm1.ann1.VGZ3RK Arachis hypogaea HOM05D000938 ORTHO05D001451 3.1e-14 82.0 115 44.3
CANSAT80G2760 Cannabis sativa HOM05D000938 ORTHO05D001451 3.1e-14 82.0 102 46.1
CiPaw.12G022500 Carya illinoinensis HOM05D000938 ORTHO05D001451 4.1e-14 81.6 112 47.3
MELO3C017130.2 Cucumis melo HOM05D000938 ORTHO05D001451 4.1e-14 81.6 100 49.0
MD14G1188700 Malus domestica HOM05D000938 ORTHO05D001451 9.1e-14 80.5 125 39.2
DCAR_015523 Daucus carota HOM05D000938 ORTHO05D001451 1.2e-13 80.1 94 48.9
Eucgr.K02888 Eucalyptus grandis HOM05D000938 ORTHO05D001451 1.2e-13 80.1 89 46.1
ECA248G2090 Erigeron canadensis HOM05D000938 ORTHO05D001451 3.5e-13 78.6 107 42.1
Eucgr.K02891 Eucalyptus grandis HOM05D000938 ORTHO05D001451 3.5e-13 78.6 106 42.5
ClCG06G016640 Citrullus lanatus HOM05D000938 ORTHO05D001451 5.9e-13 77.8 100 43.0
HanXRQChr02g0045301 Helianthus annuus HOM05D000938 ORTHO05D001451 5.9e-13 77.8 80 48.8
Phvul.009G183000 Phaseolus vulgaris HOM05D000938 ORTHO05D001451 5.9e-13 77.8 89 49.4
Prupe.5G180900 Prunus persica HOM05D000938 ORTHO05D001451 7.7e-13 77.4 120 38.3
DCAR_026099 Daucus carota HOM05D000938 ORTHO05D001451 1.0e-12 77.0 87 46.0
DCAR_026100 Daucus carota HOM05D000938 ORTHO05D001451 1.3e-12 76.6 87 42.5
Eucgr.K02890 Eucalyptus grandis HOM05D000938 ORTHO05D001451 1.7e-12 76.3 110 40.9
Peaxi162Scf00689g00421 Petunia axillaris HOM05D000938 ORTHO05D001451 1.7e-12 76.3 76 50.0
MD06G1182600 Malus domestica HOM05D000938 ORTHO05D001451 2.2e-12 75.9 115 39.1
Psat0s2917g0160 Pisum sativum HOM05D000938 ORTHO05D001451 2.2e-12 75.9 98 45.9
Lsat_1_v5_gn_5_18180 Lactuca sativa HOM05D000938 ORTHO05D001451 2.9e-12 75.5 101 38.6
PGR044G1186 Punica granatum HOM05D000938 ORTHO05D001451 3.8e-12 75.1 97 47.4
Glyma.06G187300 Glycine max HOM05D000938 ORTHO05D001451 5.0e-12 74.7 114 39.5
Sed0010235 Sechium edule HOM05D000938 ORTHO05D001451 5.0e-12 74.7 100 40.0
GSVIVG01007856001 Vitis vinifera HOM05D000938 ORTHO05D001451 5.0e-12 74.7 87 43.7
Psat0s1748g0200 Pisum sativum HOM05D000938 ORTHO05D001451 1.1e-11 73.6 55 58.2
Thecc.03G002200 Theobroma cacao HOM05D000938 ORTHO05D001451 1.1e-11 73.6 122 40.2
GSVIVG01007860001 Vitis vinifera HOM05D000938 ORTHO05D001451 1.1e-11 73.6 83 45.8
Eucgr.K02887 Eucalyptus grandis HOM05D000938 ORTHO05D001451 1.5e-11 73.2 103 41.7
Ca_16217_v3 Cicer arietinum L. HOM05D000938 ORTHO05D001451 1.9e-11 72.8 88 46.6
DCAR_015521 Daucus carota HOM05D000938 ORTHO05D001451 2.5e-11 72.4 92 44.6
RcHm_v2.0_Chr7g0179871 Rosa chinensis HOM05D000938 ORTHO05D001451 9.4e-11 70.5 93 45.2
GSVIVG01007852001 Vitis vinifera HOM05D000938 ORTHO05D001451 1.2e-10 70.1 93 40.9
Eucgr.K02886 Eucalyptus grandis HOM05D000938 ORTHO05D001451 1.0e-09 67.0 92 40.2
ATR1128G112 Amborella trichopoda HOM05D053262 ORTHO05D031099 8.8e-09 63.9 107 37.4
BcaC09g49841 Brassica carinata HOM05D000938 ORTHO05D001451 2.6e-08 62.4 69 46.4
HanXRQChr05g0154431 Helianthus annuus HOM05D000938 ORTHO05D001451 2.6e-08 62.4 108 33.3
C01p31800 Brassica napus HOM05D000938 ORTHO05D001451 3.4e-08 62.0 69 46.4
BolC1t03171H Brassica oleracea HOM05D000938 ORTHO05D001451 3.4e-08 62.0 69 46.4
RcHm_v2.0_Chr2g0170571 Rosa chinensis HOM05D000938 ORTHO05D001451 3.4e-08 62.0 118 32.2
ATR0950G001 Amborella trichopoda HOM05D053262 ORTHO05D031099 7.5e-08 60.8 106 36.8
BraA01t02483Z Brassica rapa HOM05D000938 ORTHO05D001451 9.8e-08 60.5 104 36.5
FvH4_5g16230 Fragaria vesca HOM05D000938 ORTHO05D001451 1.3e-07 60.1 107 37.4
FAN18G3863 Fragaria x ananassa HOM05D000938 ORTHO05D001451 1.3e-07 60.1 107 37.4
FAN08G1652 Fragaria x ananassa HOM05D000938 ORTHO05D001451 2.2e-07 59.3 107 34.6
A01p25390 Brassica napus HOM05D000938 ORTHO05D001451 3.7e-07 58.5 104 35.6
FAN04G0213 Fragaria x ananassa HOM05D000938 ORTHO05D001451 8.3e-07 57.4 113 33.6
FAN13G2285 Fragaria x ananassa HOM05D000938 ORTHO05D001451 1.4e-06 56.6 107 34.6
THA.LOC104821465 Tarenaya hassleriana HOM05D000938 ORTHO05D001451 1.4e-06 56.6 112 34.8
BolC1t03170H Brassica oleracea HOM05D000938 ORTHO05D001451 3.1e-06 55.5 53 50.9
A01p25400 Brassica napus HOM05D000938 ORTHO05D001451 4.1e-06 55.1 53 50.9
HanXRQChr05g0151531 Helianthus annuus HOM05D000938 ORTHO05D001451 4.1e-06 55.1 96 34.4
MD14G1188600 Malus domestica HOM05D000938 ORTHO05D001451 4.1e-06 55.1 111 36.9


User provided reference genes

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