Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p012961 Quercus lobata HOM05D004633 ORTHO05D005503 6.8e-93 344.0 173 100.0
QL03p029185 Quercus lobata HOM05D004633 ORTHO05D005503 4.6e-41 171.8 85 96.5
QL04p014325 Quercus lobata HOM05D004633 ORTHO05D005503 4.6e-41 171.8 85 96.5
QL11p046130 Quercus lobata HOM05D004633 ORTHO05D005503 4.6e-41 171.8 85 96.5
QL05p004270 Quercus lobata HOM05D004633 ORTHO05D005503 8.8e-40 167.5 83 96.4
QL10p045366 Quercus lobata HOM05D004633 ORTHO05D005503 2.6e-36 156.0 82 92.7
QL06p040312 Quercus lobata HOM05D004633 ORTHO05D005503 1.0e-11 74.3 36 94.4
FAN26G1576 Fragaria x ananassa HOM05D004633 ORTHO05D005503 6.5e-11 71.6 37 86.5
Prupe.6G230700 Prunus persica HOM05D004633 ORTHO05D005503 6.5e-11 71.6 36 88.9
AL8G44120 Arabidopsis lyrata HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
AT5G67220 Arabidopsis thaliana HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
BcaB04g20070 Brassica carinata HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
CARHR280410 Cardamine hirsuta HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
FAN19G2847 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
FAN28G1894 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
FAN28G2116 Fragaria x ananassa HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
RcHm_v2.0_Chr2g0106351 Rosa chinensis HOM05D004633 ORTHO05D005503 8.5e-11 71.2 36 88.9
BcaC04g23204 Brassica carinata HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 86.1
A09p09480 Brassica napus HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 86.1
C09p11170 Brassica napus HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 86.1
BraA09t36596Z Brassica rapa HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 86.1
Cc07_g06290 Coffea canephora HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 88.9
Rhsim08G0098400 Rhododendron simsii HOM05D004633 ORTHO05D005503 1.1e-10 70.9 36 91.7
CiPaw.01G014400 Carya illinoinensis HOM05D004633 ORTHO05D005503 1.5e-10 70.5 36 88.9
Dinv30022 Davidia involucrata HOM05D004633 ORTHO05D005503 1.5e-10 70.5 36 88.9
Duzib147G0002 Durio zibethinus HOM05D004633 ORTHO05D005503 1.5e-10 70.5 36 88.9
MD15G1287200 Malus domestica HOM05D004633 ORTHO05D005503 1.9e-10 70.1 36 86.1
Aa31LG1G15750 Aethionema arabicum HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 86.1
BolC9t54006H Brassica oleracea HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 83.3
CANSAT25G1160 Cannabis sativa HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 88.9
Carub.0008s2729 Capsella rubella HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 86.1
Eucgr.H02218 Eucalyptus grandis HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 88.9
Eucgr.L01089 Eucalyptus grandis HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 88.9
Thhalv10004143m.g Eutrema salsugineum HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 86.1
FAN23G1966 Fragaria x ananassa HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 88.9
Sp2g29450 Schrenkiella parvula HOM05D004633 ORTHO05D005503 2.5e-10 69.7 36 86.1
FvH4_1g16470 Fragaria vesca HOM05D004633 ORTHO05D005503 3.2e-10 69.3 36 86.1
Lalb_Chr05g0226241 Lupinus albus HOM05D004633 ORTHO05D005503 3.2e-10 69.3 89 44.9
Thecc.01G061800 Theobroma cacao HOM05D004633 ORTHO05D005503 3.2e-10 69.3 36 86.1
TAR376G0286 Trochodendron aralioides HOM05D004633 ORTHO05D005503 3.2e-10 69.3 36 86.1
Actinidia16468 Actinidia chinensis HOM05D004633 ORTHO05D005503 4.2e-10 68.9 36 88.9
MSTRG.3439 Avicennia marina HOM05D004633 ORTHO05D005503 4.2e-10 68.9 36 86.1
Lj4g0002857 Lotus japonicus HOM05D004633 ORTHO05D005503 4.2e-10 68.9 36 86.1
vmacro17967 Vaccinium macrocarpon HOM05D004633 ORTHO05D005503 4.2e-10 68.9 36 86.1
CDE02G1921 Ceratophyllum demersum HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 86.1
Ca_22131_v3 Cicer arietinum L. HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 83.3
Glyma.05G096300 Glycine max HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 83.3
Glyma.17G169000 Glycine max HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 83.3
Lsat_1_v5_gn_3_90261 Lactuca sativa HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 86.1
Lsat_1_v5_gn_4_164460 Lactuca sativa HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 86.1
TPR.G14594 Trifolium pratense HOM05D004633 ORTHO05D005503 5.5e-10 68.6 36 83.3
Atru.chr3.268 Acer truncatum HOM05D004633 ORTHO05D005503 7.2e-10 68.2 36 83.3
CSS0046694 Camellia sinensis var. sinensis HOM05D004633 ORTHO05D005503 7.2e-10 68.2 36 83.3
COL.COLO4_11464 Corchorus olitorius HOM05D004633 ORTHO05D005503 7.2e-10 68.2 35 88.6
Cfa004047 Carpinus fangiana HOM05D004633 ORTHO05D005503 9.4e-10 67.8 36 86.1
Ciclev10025630m.g Citrus clementina HOM05D004633 ORTHO05D005503 9.4e-10 67.8 36 83.3
Dinv26852 Davidia involucrata HOM05D004633 ORTHO05D005503 9.4e-10 67.8 36 86.1
Psat4g085040 Pisum sativum HOM05D004633 ORTHO05D005503 9.4e-10 67.8 36 83.3
EL10Ac6g15705 Beta vulgaris HOM05D004633 ORTHO05D005503 1.2e-09 67.4 36 83.3
Hma1.2p1_0017F.1_g011780 Hydrangea macrophylla HOM05D004633 ORTHO05D005503 1.2e-09 67.4 36 83.3
TWI73G0624 Tripterygium wilfordii HOM05D004633 ORTHO05D005503 1.2e-09 67.4 36 83.3
GSVIVG01022068001 Vitis vinifera HOM05D004633 ORTHO05D005503 1.2e-09 67.4 36 83.3
ClCG02G008020 Citrullus lanatus HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 83.3
CsaV3_2G035640 Cucumis sativus L. HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 83.3
Phvul.003G241100 Phaseolus vulgaris HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 80.6
PGR102G1926 Punica granatum HOM05D004633 ORTHO05D005503 1.6e-09 67.0 35 85.7
SHI29406 Sapria himalayana HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 83.3
Sed0006372 Sechium edule HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 83.3
Sed0019372 Sechium edule HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 83.3
VMungo0251G3622 Vigna mungo HOM05D004633 ORTHO05D005503 1.6e-09 67.0 36 80.6
HanXRQChr15g0490881 Helianthus annuus HOM05D004633 ORTHO05D005503 2.1e-09 66.6 36 86.1
Manes.13G119720 Manihot esculenta HOM05D004633 ORTHO05D005503 2.1e-09 66.6 35 85.7
Medtr4g094905 Medicago truncatula HOM05D004633 ORTHO05D005503 2.1e-09 66.6 36 80.6
Potri.007G047300 Populus trichocarpa HOM05D004633 ORTHO05D005503 2.1e-09 66.6 36 83.3
Sabra07G0042200 Salix brachista HOM05D004633 ORTHO05D005503 2.1e-09 66.6 36 83.3
arahy.Tifrunner.gnm1.ann1.H6KR5I Arachis hypogaea HOM05D004633 ORTHO05D005503 2.7e-09 66.2 35 85.7
arahy.Tifrunner.gnm1.ann1.ZUJJ2F Arachis hypogaea HOM05D004633 ORTHO05D005503 2.7e-09 66.2 35 85.7
Haze_15364 Corylus avellana HOM05D004633 ORTHO05D005503 2.7e-09 66.2 36 83.3
SGA_v2.0_scaffold10G05122 Striga asiatica HOM05D004633 ORTHO05D005503 2.7e-09 66.2 36 80.6
Cpa.g.sc55.107 Carica papaya HOM05D004633 ORTHO05D005503 3.6e-09 65.9 36 80.6
MELO3C024784.2 Cucumis melo HOM05D004633 ORTHO05D005503 3.6e-09 65.9 36 80.6
Gohir.A02G155700 Gossypium hirsutum HOM05D004633 ORTHO05D005503 3.6e-09 65.9 104 39.4
Nn1g04752 Nelumbo nucifera HOM05D004633 ORTHO05D005503 3.6e-09 65.9 35 85.7
Nitab4.5_0000929g0040 Nicotiana tabacum HOM05D004633 ORTHO05D005503 3.6e-09 65.9 36 80.6
Peaxi162Scf00365g00413 Petunia axillaris HOM05D004633 ORTHO05D005503 3.6e-09 65.9 36 83.3
HPP92_012974 Vanilla planifolia HOM05D004633 ORTHO05D005503 3.6e-09 65.9 36 83.3
ECA246G0986 Erigeron canadensis HOM05D004633 ORTHO05D005503 4.7e-09 65.5 36 80.6
Migut.L00177 Erythranthe guttata HOM05D004633 ORTHO05D005503 4.7e-09 65.5 36 80.6
Zm00001eb227810 Zea mays HOM05D004633 ORTHO05D005503 4.7e-09 65.5 36 80.6
AUR62003922 Chenopodium quinoa HOM05D004633 ORTHO05D005503 6.1e-09 65.1 36 80.6
AUR62038236 Chenopodium quinoa HOM05D004633 ORTHO05D005503 6.1e-09 65.1 36 80.6
Gohir.D03G024900 Gossypium hirsutum HOM05D004633 ORTHO05D005503 6.1e-09 65.1 104 39.4
Gorai.003G026500 Gossypium raimondii HOM05D004633 ORTHO05D005503 6.1e-09 65.1 104 39.4
Sc03g0001790 Simmondsia chinensis HOM05D004633 ORTHO05D005503 6.1e-09 65.1 36 80.6
ECA232G1704 Erigeron canadensis HOM05D004633 ORTHO05D005503 8.0e-09 64.7 36 80.6
HanXRQChr11g0348441 Helianthus annuus HOM05D004633 ORTHO05D005503 8.0e-09 64.7 36 80.6
Sopen03g008320 Solanum pennellii HOM05D004633 ORTHO05D005503 8.0e-09 64.7 36 80.6
Manes.12G107300 Manihot esculenta HOM05D004633 ORTHO05D005503 1.0e-08 64.3 36 77.8
Solyc03g044270.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 1.0e-08 64.3 36 80.6
THA.LOC104819242 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.0e-08 64.3 35 82.9
Actinidia03804 Actinidia chinensis HOM05D004633 ORTHO05D005503 1.8e-08 63.5 36 80.6
HanXRQChr11g0328291 Helianthus annuus HOM05D004633 ORTHO05D005503 1.8e-08 63.5 36 80.6
Hund13907 Selenicereus undatus HOM05D004633 ORTHO05D005503 1.8e-08 63.5 36 77.8
PGSC0003DMG400006483 Solanum tuberosum HOM05D004633 ORTHO05D005503 2.3e-08 63.2 36 77.8
unitig_0.g2631 Utricularia gibba HOM05D004633 ORTHO05D005503 2.3e-08 63.2 36 77.8
Solyc02g093060.3 Solanum lycopersicum HOM05D004633 ORTHO05D005503 3.0e-08 62.8 36 77.8
Sopen02g037630 Solanum pennellii HOM05D004633 ORTHO05D005503 3.0e-08 62.8 36 77.8
PGSC0003DMG400024962 Solanum tuberosum HOM05D004633 ORTHO05D005503 3.0e-08 62.8 36 77.8
CAN.G370.28 Capsicum annuum HOM05D004633 ORTHO05D005503 4.0e-08 62.4 36 77.8
THA.LOC104821245 Tarenaya hassleriana HOM05D004633 ORTHO05D005503 1.2e-07 60.8 35 80.0
ECA246G1233 Erigeron canadensis HOM05D004633 ORTHO05D005503 1.5e-07 60.5 36 72.2
Os06g0712900 Oryza sativa ssp. japonica HOM05D004633 ORTHO05D005503 2.0e-07 60.1 34 79.4
Peaxi162Scf00549g00221 Petunia axillaris HOM05D004633 ORTHO05D005503 2.0e-07 60.1 35 77.1
Aqoxy5G01172 Aquilegia oxysepala HOM05D004633 ORTHO05D005503 2.6e-07 59.7 36 75.0
BcaB02g09941 Brassica carinata HOM05D004633 ORTHO05D005503 2.6e-07 59.7 36 77.8
ATR0001G042 Amborella trichopoda HOM05D004633 ORTHO05D005503 5.7e-07 58.5 35 77.1
SEGI_00124 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 5.7e-07 58.5 35 77.1
SEGI_29602 Sequoiadendron giganteum HOM05D004633 ORTHO05D005503 5.7e-07 58.5 35 77.1
BcaC06g34804 Brassica carinata HOM05D004633 ORTHO05D005503 7.5e-07 58.2 36 75.0
A07p16750 Brassica napus HOM05D004633 ORTHO05D005503 7.5e-07 58.2 36 75.0
C07p24480 Brassica napus HOM05D004633 ORTHO05D005503 7.5e-07 58.2 36 75.0
BolC7t42968H Brassica oleracea HOM05D004633 ORTHO05D005503 7.5e-07 58.2 36 75.0
BraA07t29400Z Brassica rapa HOM05D004633 ORTHO05D005503 7.5e-07 58.2 36 75.0
HanXRQChr15g0473611 Helianthus annuus HOM05D004633 ORTHO05D005503 1.7e-06 57.0 36 69.4


User provided reference genes

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