Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p012114 Quercus lobata HOM05D003549 ORTHO05D004223 1.3e-51 206.5 128 100.0
Cfa019097 Carpinus fangiana HOM05D003549 ORTHO05D004223 1.8e-18 96.3 130 56.9
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 2.9e-16 89.0 128 51.6
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 4.2e-15 85.1 128 51.6
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 7.2e-15 84.3 127 48.0
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 7.2e-15 84.3 128 49.2
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.6e-14 83.2 128 46.9
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 2.1e-14 82.8 128 47.7
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 2.1e-14 82.8 128 50.0
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 2.7e-14 82.4 128 48.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 4.7e-14 81.6 128 50.0
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 4.7e-14 81.6 128 50.0
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 4.7e-14 81.6 126 48.4
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 6.1e-14 81.3 128 48.4
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 6.1e-14 81.3 128 47.7
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 8.0e-14 80.9 128 46.9
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.0e-13 80.5 127 43.3
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-13 80.5 126 48.4
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-13 80.5 126 48.4
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-13 80.5 126 48.4
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 1.4e-13 80.1 128 45.3
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.8e-13 79.7 128 45.3
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 1.8e-13 79.7 126 47.6
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 3.0e-13 79.0 126 48.4
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-13 79.0 126 48.4
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 5.2e-13 78.2 128 45.3
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.2e-13 78.2 128 48.4
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.2e-13 78.2 128 48.4
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 6.8e-13 77.8 128 48.4
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 1.2e-12 77.0 125 44.8
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.2e-12 77.0 128 45.3
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.5e-12 76.6 128 45.3
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 2.0e-12 76.3 127 47.2
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 2.0e-12 76.3 125 44.8
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 2.0e-12 76.3 125 48.8
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 3.4e-12 75.5 128 46.9
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.4e-12 75.5 128 39.8
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 5.7e-12 74.7 127 39.4
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 5.7e-12 74.7 128 46.9
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 9.8e-12 73.9 126 47.6
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.7e-11 73.2 127 46.5
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 1.7e-11 73.2 127 45.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.8e-11 72.4 128 39.8
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 3.7e-11 72.0 128 44.5
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 3.7e-11 72.0 128 41.4
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 4.8e-11 71.6 128 43.0
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 4.8e-11 71.6 128 46.1
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 4.8e-11 71.6 128 45.3
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 6.3e-11 71.2 127 44.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 8.3e-11 70.9 125 45.6
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 8.3e-11 70.9 128 39.1
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 8.3e-11 70.9 124 41.1
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 8.3e-11 70.9 128 45.3
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 8.3e-11 70.9 128 39.8
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-10 70.5 128 46.1
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 1.1e-10 70.5 128 46.1
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 1.1e-10 70.5 125 44.8
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-10 70.5 124 41.1
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 1.1e-10 70.5 124 41.1
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.4e-10 70.1 128 41.4
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.8e-10 69.7 127 38.6
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 4.1e-10 68.6 125 41.6
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 4.1e-10 68.6 124 44.4
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.1e-10 68.6 127 40.2
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 4.1e-10 68.6 127 40.2
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 7.0e-10 67.8 127 45.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 9.1e-10 67.4 127 44.9
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.7e-09 65.9 128 43.0
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 3.5e-09 65.5 127 41.7
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 3.5e-09 65.5 128 45.3
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.5e-09 65.5 129 44.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 3.5e-09 65.5 127 38.6
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 5.9e-09 64.7 127 44.1
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 5.9e-09 64.7 127 44.1
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 5.9e-09 64.7 127 44.1
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.7e-09 64.3 127 37.8
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-08 63.9 127 40.9
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-08 63.9 127 40.9
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-08 63.9 127 40.9
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 1.0e-08 63.9 127 40.9
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 1.0e-08 63.9 130 44.6
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.3e-08 63.5 128 36.7
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 1.3e-08 63.5 127 36.2
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 2.2e-08 62.8 127 40.9
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.2e-08 62.8 127 40.9
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 2.2e-08 62.8 124 39.5
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 2.2e-08 62.8 124 46.0
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 2.9e-08 62.4 124 38.7
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 3.8e-08 62.0 124 41.9
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 3.8e-08 62.0 124 41.9
Haze_18696 Corylus avellana HOM05D003549 ORTHO05D004223 5.0e-08 61.6 32 90.6
AT1G64750 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.5e-08 61.2 136 44.1
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 6.5e-08 61.2 128 40.6
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 6.5e-08 61.2 128 44.5
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 8.5e-08 60.8 124 37.9
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 8.5e-08 60.8 124 37.9
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.5e-07 60.1 129 38.8
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.5e-07 60.1 127 41.7
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 1.5e-07 60.1 129 43.4
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.9e-07 59.7 125 38.4
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 1.9e-07 59.7 127 40.9
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 1.9e-07 59.7 121 41.3
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 1.9e-07 59.7 124 33.9
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 2.5e-07 59.3 124 38.7
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 2.5e-07 59.3 124 38.7
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 2.5e-07 59.3 124 38.7
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 2.5e-07 59.3 124 38.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 2.5e-07 59.3 124 40.3
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 2.5e-07 59.3 127 36.2
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 3.2e-07 58.9 100 40.0
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 3.2e-07 58.9 127 37.8
CARHR055420 Cardamine hirsuta HOM05D003549 ORTHO05D004223 3.2e-07 58.9 127 41.7
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 3.2e-07 58.9 127 34.6
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.2e-07 58.5 130 39.2
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 4.2e-07 58.5 127 38.6
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 4.2e-07 58.5 124 41.1
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 5.5e-07 58.2 100 39.0
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 7.2e-07 57.8 125 36.0
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 7.2e-07 57.8 100 39.0
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 7.2e-07 57.8 122 41.0
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 9.4e-07 57.4 124 33.9
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.2e-06 57.0 122 45.1
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.6e-06 56.6 126 41.3
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 2.1e-06 56.2 124 41.1
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.1e-06 56.2 118 43.2
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.1e-06 56.2 126 39.7
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.7e-06 55.8 124 34.7
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 2.7e-06 55.8 127 44.1
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.6e-06 55.5 127 40.9
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 3.6e-06 55.5 128 43.8
Lalb_Chr23g0273191 Lupinus albus HOM05D003549 ORTHO05D004223 3.6e-06 55.5 31 87.1
CSS0021629 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 4.7e-06 55.1 30 86.7
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 4.7e-06 55.1 125 39.2
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 6.1e-06 54.7 125 33.6


User provided reference genes

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