Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 2.0e-140 502.7 300 100.0
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 7.8e-137 490.7 304 97.7
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 8.2e-102 374.4 296 80.7
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 1.4e-101 373.6 296 80.1
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 6.1e-97 358.2 305 73.1
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.0e-96 357.5 301 75.1
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.3e-96 356.3 299 68.9
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 3.0e-96 355.9 299 77.6
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 8.8e-96 354.4 303 70.0
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 2.0e-95 353.2 297 74.1
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.3e-95 352.4 299 67.6
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.3e-95 352.4 299 67.6
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.3e-94 350.5 299 69.6
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.3e-94 350.5 295 74.2
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.7e-94 350.1 298 69.5
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 2.2e-94 349.7 298 69.5
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 8.2e-94 347.8 303 68.0
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 2.4e-93 346.3 296 67.9
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 3.1e-93 345.9 304 62.5
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 9.1e-93 344.4 294 67.0
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.5e-92 343.6 299 73.9
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.6e-92 342.8 295 75.6
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 3.4e-92 342.4 317 65.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 5.9e-92 341.7 293 66.6
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 8.5e-91 337.8 296 69.3
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 5.5e-90 335.1 212 78.3
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 5.5e-90 335.1 321 61.4
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 2.1e-89 333.2 300 69.3
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 2.7e-89 332.8 300 64.0
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 4.7e-89 332.0 295 72.9
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 4.7e-89 332.0 308 64.9
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.1e-89 331.6 295 72.9
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 7.9e-89 331.3 309 67.3
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.0e-88 330.9 254 73.6
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 1.0e-88 330.9 300 73.3
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.8e-88 330.1 214 88.8
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 1.8e-88 330.1 249 77.1
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.0e-88 329.3 294 67.7
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 3.9e-88 328.9 299 68.2
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 8.8e-88 327.8 210 88.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.8e-88 327.8 210 88.6
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 1.1e-87 327.4 300 68.3
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 2.6e-87 326.2 307 65.8
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 7.4e-87 324.7 210 88.1
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 7.4e-87 324.7 301 64.1
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 9.7e-87 324.3 213 75.6
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.2e-86 323.2 247 67.6
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 4.8e-86 322.0 303 59.1
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.2e-86 321.2 210 83.8
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 8.2e-86 321.2 210 83.8
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-85 320.9 210 84.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.1e-85 320.9 210 76.2
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 1.1e-85 320.9 244 66.8
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-85 320.5 228 74.6
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 1.8e-85 320.1 212 84.4
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.4e-85 319.7 207 82.1
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 3.1e-85 319.3 214 85.0
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 5.3e-85 318.5 210 80.0
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 5.3e-85 318.5 213 81.2
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 9.1e-85 317.8 214 80.4
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 9.1e-85 317.8 300 66.0
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 4.5e-84 315.5 210 74.8
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 1.7e-83 313.5 246 65.9
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 2.2e-83 313.2 210 81.9
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 2.9e-83 312.8 209 81.3
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 8.5e-83 311.2 295 65.8
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.1e-82 310.8 251 64.1
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.2e-82 308.9 302 57.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 5.5e-82 308.5 214 71.0
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 9.4e-82 307.8 210 73.8
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.1e-81 306.6 249 65.9
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.7e-81 305.4 245 65.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.0e-80 304.3 277 61.7
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.4e-80 303.9 195 78.5
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.8e-80 303.5 214 82.2
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 6.7e-80 301.6 299 56.9
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 8.8e-80 301.2 214 79.9
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 1.1e-79 300.8 304 57.2
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 5.7e-79 298.5 267 72.7
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 7.5e-79 298.1 293 60.1
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 2.2e-78 296.6 212 68.9
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 7.0e-77 291.6 206 77.2
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 9.1e-77 291.2 264 68.6
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 1.6e-76 290.4 214 72.9
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 2.7e-76 289.7 209 76.6
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.7e-76 289.7 214 78.5
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.3e-75 287.3 214 68.7
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.9e-75 286.2 214 65.4
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 8.0e-73 278.1 206 74.8
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.0e-72 276.2 191 71.7
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 5.2e-72 275.4 178 77.5
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 4.4e-71 272.3 213 64.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 9.8e-71 271.2 217 64.5
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 2.2e-70 270.0 178 77.0
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 3.7e-70 269.2 141 89.4
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 8.3e-70 268.1 213 62.4
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 2.9e-67 259.6 188 70.7
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 1.1e-66 257.7 234 69.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 1.1e-66 257.7 210 61.9
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.2e-66 255.0 321 49.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 1.6e-65 253.8 212 71.7
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.1e-65 253.4 178 70.2
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 4.9e-62 242.3 213 59.2
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.6e-57 226.1 119 89.1
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 1.7e-51 207.2 230 63.5
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 6.8e-48 195.3 202 59.4
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.2e-41 172.2 153 61.4
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 3.7e-38 162.9 123 68.3
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 1.4e-29 134.4 176 40.9
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 7.8e-28 128.6 204 47.5
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.2e-23 114.8 69 79.7
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.6e-23 113.6 179 42.5
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 4.4e-23 112.8 174 56.9
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 9.3e-21 105.1 121 52.1
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 2.1e-20 104.0 88 64.8
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 1.7e-19 100.9 134 45.5
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 1.9e-18 97.4 130 50.8
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 4.3e-18 96.3 91 58.2
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.8e-17 92.8 133 37.6
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.8e-16 90.9 74 63.5
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 6.9e-16 89.0 55 76.4
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 6.4e-14 82.4 107 41.1
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.0e-11 75.1 91 52.7
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 9.6e-10 68.6 139 34.5
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 1.6e-09 67.8 133 30.1
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.8e-09 67.0 162 34.0
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.6e-09 66.6 149 33.6
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 1.8e-08 64.3 137 32.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 5.3e-08 62.8 138 31.2
Carub.0001s0544 Capsella rubella HOM05D001043 ORTHO05D006432 6.9e-08 62.4 141 35.5
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 4.5e-07 59.7 141 32.6
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 7.6e-07 58.9 112 32.1
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 1.3e-06 58.2 136 32.4
Gorai.005G015800 Gossypium raimondii HOM05D001043 ORTHO05D006432 1.3e-06 58.2 135 32.6
PGR142G0751 Punica granatum HOM05D001043 ORTHO05D006432 1.3e-06 58.2 142 33.8
Sp1g04910 Schrenkiella parvula HOM05D001043 ORTHO05D006432 1.3e-06 58.2 141 33.3
Gohir.D02G012400 Gossypium hirsutum HOM05D001043 ORTHO05D006432 1.7e-06 57.8 135 32.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.7e-06 57.8 137 32.1
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 2.2e-06 57.4 120 36.7
AL1G16060 Arabidopsis lyrata HOM05D001043 ORTHO05D006432 2.9e-06 57.0 141 33.3
AT1G06110 Arabidopsis thaliana HOM05D001043 ORTHO05D006432 2.9e-06 57.0 141 32.6
CiPaw.01G096300 Carya illinoinensis HOM05D001043 ORTHO05D006432 2.9e-06 57.0 101 35.6
Gohir.A02G011600 Gossypium hirsutum HOM05D001043 ORTHO05D006432 2.9e-06 57.0 135 32.6
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 4.9e-06 56.2 112 32.1
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 4.9e-06 56.2 48 62.5
Nitab4.5_0001586g0110 Nicotiana tabacum HOM05D001043 ORTHO05D006432 6.4e-06 55.8 136 30.9
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 8.4e-06 55.5 134 29.1
Thhalv10007687m.g Eutrema salsugineum HOM05D001043 ORTHO05D006432 8.4e-06 55.5 141 34.0
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.4e-06 55.5 110 33.6


User provided reference genes

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