Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p010123 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-307 1058.9 591 100.0
QL10p009076 Quercus lobata HOM05D002875 ORTHO05D003215 2.3e-281 971.8 590 91.7
QL10p009141 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-267 926.0 592 86.0
QL10p009914 Quercus lobata HOM05D002875 ORTHO05D003215 3.7e-255 884.8 590 85.4
QL10p009338 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-230 803.1 590 80.3
QL10p009349 Quercus lobata HOM05D002875 ORTHO05D003215 4.2e-227 791.6 533 80.9
QL10p009301 Quercus lobata HOM05D002875 ORTHO05D003215 1.4e-217 760.0 547 75.3
QL10p009474 Quercus lobata HOM05D002875 ORTHO05D003215 1.9e-139 500.4 589 54.7
QL10p009524 Quercus lobata HOM05D002875 ORTHO05D003215 2.0e-128 463.8 535 53.8
Haze_07529 Corylus avellana HOM05D002875 ORTHO05D003215 9.7e-123 444.9 539 50.5
Cfa019158 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.8e-121 440.7 554 50.0
CiPaw.11G024100 Carya illinoinensis HOM05D002875 ORTHO05D003215 9.4e-118 428.3 535 48.8
Dinv20633 Davidia involucrata HOM05D002875 ORTHO05D003215 1.4e-116 424.5 556 48.0
CiPaw.12G028200 Carya illinoinensis HOM05D002875 ORTHO05D003215 3.3e-115 419.9 537 49.2
Ciclev10018615m.g Citrus clementina HOM05D002875 ORTHO05D003215 4.5e-112 409.5 550 45.6
Potri.015G079000 Populus trichocarpa HOM05D002875 ORTHO05D003215 1.0e-111 408.3 551 46.3
COL.COLO4_30079 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.9e-110 404.1 532 48.3
Potri.012G087400 Populus trichocarpa HOM05D002875 ORTHO05D003215 2.1e-109 400.6 535 47.1
Lj3A20G43 Lonicera japonica HOM05D002875 ORTHO05D003215 2.7e-109 400.2 545 45.7
Sabra15G0103500 Salix brachista HOM05D002875 ORTHO05D003215 2.7e-109 400.2 535 46.2
Duzib205G0575 Durio zibethinus HOM05D002875 ORTHO05D003215 1.4e-108 397.9 541 47.3
Thecc.03G015100 Theobroma cacao HOM05D002875 ORTHO05D003215 3.0e-108 396.7 537 46.7
DCAR_016049 Daucus carota HOM05D002875 ORTHO05D003215 5.7e-107 392.5 559 44.2
vmacro16624 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 1.8e-105 387.5 541 44.0
TAR629G1476 Trochodendron aralioides HOM05D002875 ORTHO05D003215 4.1e-105 386.3 551 45.9
FAN18G4336 Fragaria x ananassa HOM05D002875 ORTHO05D003215 5.4e-105 386.0 535 45.6
FvH4_5g05550 Fragaria vesca HOM05D002875 ORTHO05D003215 7.0e-105 385.6 535 45.6
CANSAT80G1146 Cannabis sativa HOM05D002875 ORTHO05D003215 1.6e-104 384.4 538 45.9
CAN.G2294.1 Capsicum annuum HOM05D002875 ORTHO05D003215 2.0e-104 384.0 534 44.9
Gorai.008G296700 Gossypium raimondii HOM05D002875 ORTHO05D003215 7.7e-104 382.1 535 45.8
Gohir.A12G275500 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.0e-103 381.7 535 45.8
CSS0028386 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.7e-103 380.9 553 44.7
Gohir.D12G276200 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.7e-103 380.9 535 45.6
Manes.06G106500 Manihot esculenta HOM05D002875 ORTHO05D003215 2.9e-103 380.2 554 44.9
FAN13G1897 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.5e-103 379.0 537 45.1
Prupe.5G170900 Prunus persica HOM05D002875 ORTHO05D003215 6.5e-103 379.0 541 44.9
SGA_v2.0_scaffold25G10830 Striga asiatica HOM05D002875 ORTHO05D003215 8.5e-103 378.6 533 45.2
Lj1g0027129 Lotus japonicus HOM05D002875 ORTHO05D003215 1.5e-102 377.9 532 44.7
Nn3g16811 Nelumbo nucifera HOM05D002875 ORTHO05D003215 2.5e-102 377.1 538 44.6
RcHm_v2.0_Chr7g0193221 Rosa chinensis HOM05D002875 ORTHO05D003215 2.5e-102 377.1 537 45.3
Rhsim12G0166000 Rhododendron simsii HOM05D002875 ORTHO05D003215 3.2e-102 376.7 540 43.3
TWI23G1153 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 5.5e-102 375.9 533 45.4
Eucgr.K02827 Eucalyptus grandis HOM05D002875 ORTHO05D003215 7.2e-102 375.6 553 43.2
TWI39G0667 Tripterygium wilfordii HOM05D002875 ORTHO05D003215 1.2e-101 374.8 524 45.2
Migut.O00118 Erythranthe guttata HOM05D002875 ORTHO05D003215 4.7e-101 372.9 523 44.9
MBI16_g05467_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 2.3e-100 370.5 542 43.7
PGSC0003DMG400018158 Solanum tuberosum HOM05D002875 ORTHO05D003215 4.0e-100 369.8 533 43.0
SalBow5G4119 Salvia bowleyana HOM05D002875 ORTHO05D003215 6.8e-100 369.0 527 44.8
Solyc03g112760.3 Solanum lycopersicum HOM05D002875 ORTHO05D003215 8.8e-100 368.6 533 42.8
Sopen03g031840 Solanum pennellii HOM05D002875 ORTHO05D003215 1.2e-99 368.2 533 42.8
MD06G1171200 Malus domestica HOM05D002875 ORTHO05D003215 9.8e-99 365.2 536 44.8
Cc04_g12200 Coffea canephora HOM05D002875 ORTHO05D003215 1.3e-98 364.8 540 44.1
Atru.chr9.2501 Acer truncatum HOM05D002875 ORTHO05D003215 1.7e-98 364.4 518 45.2
PGR044G0014 Punica granatum HOM05D002875 ORTHO05D003215 4.1e-97 359.8 539 42.9
PSO063G4348 Papaver somniferum HOM05D002875 ORTHO05D003215 9.2e-97 358.6 515 43.5
PSO782G2041 Papaver somniferum HOM05D002875 ORTHO05D003215 4.5e-96 356.3 540 43.9
PSO832G2157 Papaver somniferum HOM05D002875 ORTHO05D003215 5.9e-96 355.9 540 43.9
Aqoxy3G02874 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 7.7e-96 355.5 536 42.2
Ca_26884_v3 Cicer arietinum L. HOM05D002875 ORTHO05D003215 1.7e-95 354.4 548 42.0
EL10Ac5g10726 Beta vulgaris HOM05D002875 ORTHO05D003215 2.3e-95 354.0 535 41.9
Sc04g0001700 Simmondsia chinensis HOM05D002875 ORTHO05D003215 5.0e-95 352.8 539 42.1
Phvul.009G176900 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 8.6e-95 352.1 549 42.8
VMungo1309G1778 Vigna mungo HOM05D002875 ORTHO05D003215 1.1e-94 351.7 530 43.4
CSS0013183 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.5e-94 350.5 520 44.4
unitig_26.g9618 Utricularia gibba HOM05D002875 ORTHO05D003215 3.3e-94 350.1 536 40.7
MSTRG.11469 Avicennia marina HOM05D002875 ORTHO05D003215 1.2e-93 348.2 536 41.8
CSS0012171 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 2.1e-93 347.4 520 44.2
HanXRQChr15g0463021 Helianthus annuus HOM05D002875 ORTHO05D003215 3.6e-93 346.7 520 42.9
AUR62030942 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.0e-92 345.1 535 40.9
Glyma.04G185000 Glycine max HOM05D002875 ORTHO05D003215 4.0e-92 343.2 538 42.2
Medtr3g077550 Medicago truncatula HOM05D002875 ORTHO05D003215 2.2e-90 337.4 533 41.5
ClCG01G013270 Citrullus lanatus HOM05D002875 ORTHO05D003215 4.9e-90 336.3 556 39.9
CsaV3_1G008630 Cucumis sativus L. HOM05D002875 ORTHO05D003215 4.9e-90 336.3 556 39.7
HanXRQChr09g0272101 Helianthus annuus HOM05D002875 ORTHO05D003215 8.3e-90 335.5 524 42.7
MELO3C002277.2 Cucumis melo HOM05D002875 ORTHO05D003215 1.1e-89 335.1 557 39.9
Lalb_Chr11g0071501 Lupinus albus HOM05D002875 ORTHO05D003215 1.4e-89 334.7 532 42.3
Sed0001364 Sechium edule HOM05D002875 ORTHO05D003215 1.8e-89 334.3 556 39.7
Psat0s2176g0120 Pisum sativum HOM05D002875 ORTHO05D003215 4.1e-89 333.2 533 41.8
Lsat_1_v5_gn_4_75800 Lactuca sativa HOM05D002875 ORTHO05D003215 7.0e-89 332.4 520 42.1
CARHR156950 Cardamine hirsuta HOM05D002875 ORTHO05D003215 1.6e-88 331.3 534 40.3
Carub.0005s1433 Capsella rubella HOM05D002875 ORTHO05D003215 1.7e-87 327.8 527 41.6
Sed0012471 Sechium edule HOM05D002875 ORTHO05D003215 1.7e-87 327.8 541 39.9
C08p23160 Brassica napus HOM05D002875 ORTHO05D003215 5.0e-87 326.2 530 40.2
BcaB01g00838 Brassica carinata HOM05D002875 ORTHO05D003215 8.6e-87 325.5 532 40.4
BcaC07g39302 Brassica carinata HOM05D002875 ORTHO05D003215 1.1e-86 325.1 532 40.2
BolC8t49950H Brassica oleracea HOM05D002875 ORTHO05D003215 1.1e-86 325.1 532 40.2
AUR62008190 Chenopodium quinoa HOM05D002875 ORTHO05D003215 1.9e-86 324.3 536 39.9
AL5G27550 Arabidopsis lyrata HOM05D002875 ORTHO05D003215 2.5e-86 323.9 538 40.1
AT3G48200 Arabidopsis thaliana HOM05D002875 ORTHO05D003215 9.5e-86 322.0 538 40.1
A06p19500 Brassica napus HOM05D002875 ORTHO05D003215 1.6e-85 321.2 532 40.0
BraA06t25029Z Brassica rapa HOM05D002875 ORTHO05D003215 1.6e-85 321.2 532 40.0
Thhalv10010082m.g Eutrema salsugineum HOM05D002875 ORTHO05D003215 2.1e-85 320.9 538 39.6
QL10p009017 Quercus lobata HOM05D002875 ORTHO05D003215 6.2e-85 319.3 522 42.5
Sp5g13820 Schrenkiella parvula HOM05D002875 ORTHO05D003215 6.2e-85 319.3 536 39.9
Aa31LG4G16810 Aethionema arabicum HOM05D002875 ORTHO05D003215 6.8e-84 315.8 534 39.5
HPP92_020270 Vanilla planifolia HOM05D002875 ORTHO05D003215 6.8e-84 315.8 534 39.0
QL10p009241 Quercus lobata HOM05D002875 ORTHO05D003215 3.4e-83 313.5 544 40.4
ATR1091G018 Amborella trichopoda HOM05D002875 ORTHO05D003215 8.3e-82 308.9 545 37.8
ECA232G2272 Erigeron canadensis HOM05D002875 ORTHO05D003215 5.4e-81 306.2 513 39.4
arahy.Tifrunner.gnm1.ann1.H1PHD7 Arachis hypogaea HOM05D002875 ORTHO05D003215 2.0e-80 304.3 551 38.5
arahy.Tifrunner.gnm1.ann1.Q9ZI40 Arachis hypogaea HOM05D002875 ORTHO05D003215 2.7e-80 303.9 551 38.5
QL10p010250 Quercus lobata HOM05D002875 ORTHO05D003215 3.0e-79 300.4 435 46.7
CDE01G0076 Ceratophyllum demersum HOM05D002875 ORTHO05D003215 6.6e-79 299.3 526 38.6
QL10p009197 Quercus lobata HOM05D002875 ORTHO05D003215 6.6e-79 299.3 542 40.2
QL10p009447 Quercus lobata HOM05D002875 ORTHO05D003215 1.9e-78 297.7 526 42.0
THA.LOC104818213 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.2e-77 295.0 526 37.6
Hund02758 Selenicereus undatus HOM05D002875 ORTHO05D003215 2.9e-74 283.9 546 37.5
Nitab4.5_0007371g0020 Nicotiana tabacum HOM05D002875 ORTHO05D003215 8.3e-74 282.3 522 39.1
QL10p008968 Quercus lobata HOM05D002875 ORTHO05D003215 1.9e-73 281.2 376 47.9
Os05g0594500 Oryza sativa ssp. japonica HOM05D002875 ORTHO05D003215 7.1e-73 279.3 539 37.3
QL10p010210 Quercus lobata HOM05D002875 ORTHO05D003215 2.1e-72 277.7 473 42.7
TPR.G17138 Trifolium pratense HOM05D002875 ORTHO05D003215 8.1e-69 265.8 533 36.8
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 2.8e-61 240.7 554 33.2
Hma1.2p1_0149F.1_g066580 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 4.4e-59 233.4 687 30.3
Zm00001eb345460 Zea mays HOM05D002875 ORTHO05D003215 3.8e-58 230.3 592 31.6
Cpa.g.sc76.34 Carica papaya HOM05D002875 ORTHO05D003215 9.3e-57 225.7 340 44.4
Oeu016411.4 Olea europaea HOM05D002875 ORTHO05D003215 3.6e-53 213.8 533 32.3
QL06p021162 Quercus lobata HOM05D002875 ORTHO05D003215 5.3e-52 209.9 155 76.8
Atru.chr9.2505 Acer truncatum HOM05D002875 ORTHO05D003215 1.4e-49 201.8 365 40.8
Hma1.2p1_0149F.1_g066560 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 4.2e-49 200.3 780 26.9
Hma1.2p1_0660F.1_g197790 Hydrangea macrophylla HOM05D002875 ORTHO05D003215 1.0e-47 195.7 454 35.9
SMO343G0006 Selaginella moellendorffii HOM05D002875 ORTHO05D003215 8.7e-47 192.6 525 28.6
Pp3c9_870 Physcomitrium patens HOM05D002875 ORTHO05D003215 3.3e-46 190.7 546 29.1
AagrBONN_evm.TU.Sc2ySwM_228.3556 Anthoceros agrestis HOM05D002875 ORTHO05D003215 4.3e-46 190.3 563 29.7
Potri.001G330000 Populus trichocarpa HOM05D002875 ORTHO05D003215 1.4e-44 185.3 554 27.6
MD09G1010700 Malus domestica HOM05D002875 ORTHO05D003215 3.1e-44 184.1 547 29.3
Mapoly0015s0063 Marchantia polymorpha HOM05D002875 ORTHO05D003215 1.3e-42 178.7 614 27.4
Sabra16G0211300 Salix brachista HOM05D002875 ORTHO05D003215 4.9e-42 176.8 548 27.9
COL.COLO4_13262 Corchorus olitorius HOM05D002875 ORTHO05D003215 1.1e-41 175.6 529 28.0
Pp3c1_22410 Physcomitrium patens HOM05D002875 ORTHO05D003215 1.9e-41 174.9 592 27.9
Nitab4.5_0003229g0110 Nicotiana tabacum HOM05D002875 ORTHO05D003215 7.1e-41 172.9 192 50.5
Prupe.3G306400 Prunus persica HOM05D002875 ORTHO05D003215 9.3e-41 172.6 560 26.8
TAR374G0377 Trochodendron aralioides HOM05D002875 ORTHO05D003215 9.3e-41 172.6 570 27.7
FAN05G0398 Fragaria x ananassa HOM05D002875 ORTHO05D003215 1.2e-40 172.2 557 28.2
Ciclev10014073m.g Citrus clementina HOM05D002875 ORTHO05D003215 1.6e-40 171.8 555 28.5
FvH4_6g53530 Fragaria vesca HOM05D002875 ORTHO05D003215 6.0e-40 169.9 555 27.6
FAN14G0620 Fragaria x ananassa HOM05D002875 ORTHO05D003215 6.0e-40 169.9 557 28.0
Manes.17G103200 Manihot esculenta HOM05D002875 ORTHO05D003215 6.0e-40 169.9 553 27.5
Pp3c9_12560 Physcomitrium patens HOM05D002875 ORTHO05D003215 2.3e-39 167.9 542 27.3
Aqoxy5G03377 Aquilegia oxysepala HOM05D002875 ORTHO05D003215 3.9e-39 167.2 561 27.1
Thecc.04G036100 Theobroma cacao HOM05D002875 ORTHO05D003215 3.9e-39 167.2 558 27.8
Dinv25659 Davidia involucrata HOM05D002875 ORTHO05D003215 8.7e-39 166.0 558 27.4
Peaxi162Scf00089g01847 Petunia axillaris HOM05D002875 ORTHO05D003215 1.1e-38 165.6 187 47.1
QL02p071336 Quercus lobata HOM05D002875 ORTHO05D003215 3.3e-38 164.1 567 27.3
Haze_03110 Corylus avellana HOM05D002875 ORTHO05D003215 2.1e-37 161.4 548 26.5
Nn4g22316 Nelumbo nucifera HOM05D002875 ORTHO05D003215 2.8e-37 161.0 575 27.3
Lalb_Chr14g0363441 Lupinus albus HOM05D002875 ORTHO05D003215 8.1e-37 159.5 553 26.8
SEGI_08382 Sequoiadendron giganteum HOM05D002875 ORTHO05D003215 8.1e-37 159.5 621 26.6
Cfa010845 Carpinus fangiana HOM05D002875 ORTHO05D003215 1.8e-36 158.3 548 26.3
VMungo1383G3279 Vigna mungo HOM05D002875 ORTHO05D003215 4.0e-36 157.1 553 26.9
arahy.Tifrunner.gnm1.ann1.E3K3GD Arachis hypogaea HOM05D002875 ORTHO05D003215 9.0e-36 156.0 540 25.4
CANSAT64G2306 Cannabis sativa HOM05D002875 ORTHO05D003215 9.0e-36 156.0 547 26.7
Gohir.D04G076700 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.5e-35 155.2 544 27.6
Gorai.012G086500 Gossypium raimondii HOM05D002875 ORTHO05D003215 1.5e-35 155.2 544 27.6
Phvul.001G093400 Phaseolus vulgaris HOM05D002875 ORTHO05D003215 5.8e-35 153.3 553 26.9
arahy.Tifrunner.gnm1.ann1.AA3MKH Arachis hypogaea HOM05D002875 ORTHO05D003215 7.6e-35 152.9 538 25.7
Glyma.16G056400 Glycine max HOM05D002875 ORTHO05D003215 1.0e-34 152.5 554 27.3
CiPaw.03G055700 Carya illinoinensis HOM05D002875 ORTHO05D003215 2.2e-34 151.4 559 25.8
Cpa.g.c44787 Carica papaya HOM05D002875 ORTHO05D003215 2.9e-34 151.0 137 60.6
MBI07_g16948_MAGBIO Magnolia biondii HOM05D002875 ORTHO05D003215 2.9e-34 151.0 598 26.1
QL10p010036 Quercus lobata HOM05D002875 ORTHO05D003215 3.8e-34 150.6 193 47.7
Atru.chr6.2572 Acer truncatum HOM05D002875 ORTHO05D003215 1.1e-33 149.1 559 26.1
GSVIVG01033091001 Vitis vinifera HOM05D002875 ORTHO05D003215 1.9e-33 148.3 408 30.6
Actinidia04438 Actinidia chinensis HOM05D002875 ORTHO05D003215 2.5e-33 147.9 566 24.7
DCAR_000966 Daucus carota HOM05D002875 ORTHO05D003215 3.2e-33 147.5 561 25.1
Glyma.19G091300 Glycine max HOM05D002875 ORTHO05D003215 3.2e-33 147.5 543 25.4
TPR.G28903 Trifolium pratense HOM05D002875 ORTHO05D003215 5.5e-33 146.7 271 38.7
Rhsim08G0042800 Rhododendron simsii HOM05D002875 ORTHO05D003215 1.2e-32 145.6 588 25.7
QL10p009041 Quercus lobata HOM05D002875 ORTHO05D003215 3.0e-31 141.0 261 40.2
Lju41C52G13 Lonicera japonica HOM05D002875 ORTHO05D003215 2.0e-27 128.3 519 26.0
RcHm_v2.0_Chr2g0175571 Rosa chinensis HOM05D002875 ORTHO05D003215 4.5e-27 127.1 464 26.5
Gohir.A05G338300 Gossypium hirsutum HOM05D002875 ORTHO05D003215 1.0e-26 125.9 473 26.4
Duzib187G1197 Durio zibethinus HOM05D002875 ORTHO05D003215 1.6e-24 118.6 418 27.0
THA.LOC104823982 Tarenaya hassleriana HOM05D002875 ORTHO05D003215 1.1e-22 112.5 541 25.3
FAN09G0514 Fragaria x ananassa HOM05D002875 ORTHO05D003215 2.8e-21 107.8 524 25.6
PSO478G3098 Papaver somniferum HOM05D002875 ORTHO05D003215 6.3e-21 106.7 399 24.6
PSO017G7193 Papaver somniferum HOM05D002875 ORTHO05D003215 9.1e-20 102.8 399 25.8
AagrBONN_evm.TU.Sc2ySwM_340.781 Anthoceros agrestis HOM05D002875 ORTHO05D003215 2.7e-16 91.3 113 43.4
Cpa.g.sc171.14 Carica papaya HOM05D002875 ORTHO05D003215 2.7e-16 91.3 376 26.3
CAN.G1166.11 Capsicum annuum HOM05D002875 ORTHO05D003215 1.0e-15 89.4 69 59.4
vmacro18347 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 2.3e-15 88.2 360 26.7
CSS0013993 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 3.0e-15 87.8 521 23.4
CSS0041276 Camellia sinensis var. sinensis HOM05D002875 ORTHO05D003215 1.1e-14 85.9 521 23.2
QL10p010166 Quercus lobata HOM05D002875 ORTHO05D003215 1.3e-13 82.4 489 26.0
CBR_g23830 Chara braunii HOM05D002875 ORTHO05D003215 1.0e-10 72.8 464 23.3
Ah.11g051480 Amaranthus hybridus HOM05D002875 ORTHO05D003215 2.2e-10 71.6 67 49.3
vmacro18346 Vaccinium macrocarpon HOM05D002875 ORTHO05D003215 7.4e-06 56.6 69 37.7


User provided reference genes

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