Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p007195 Quercus lobata HOM05D000509 ORTHO05D006393 1.0e-41 172.9 86 100.0
QL08p048801 Quercus lobata HOM05D000509 ORTHO05D006393 4.5e-37 157.5 80 98.8
QL11p053603 Quercus lobata HOM05D000509 ORTHO05D006393 5.0e-36 154.1 77 100.0
QL93p0259_0027 Quercus lobata HOM05D000509 ORTHO05D006393 8.8e-33 143.3 79 91.1
QL01p005382 Quercus lobata HOM05D000509 ORTHO05D006393 7.4e-32 140.2 79 89.9
CiPaw.01G061300 Carya illinoinensis HOM05D000509 ORTHO05D006393 2.3e-25 118.6 79 75.9
Haze_15506 Corylus avellana HOM05D000509 ORTHO05D006393 1.3e-23 112.8 79 73.4
Ciclev10022504m.g Citrus clementina HOM05D000509 ORTHO05D006393 1.7e-23 112.5 80 71.2
Cfa003925 Carpinus fangiana HOM05D000509 ORTHO05D006393 4.1e-22 107.8 78 70.5
CiPaw.02G030900 Carya illinoinensis HOM05D000509 ORTHO05D006393 9.1e-22 106.7 79 70.9
Dinv32484 Davidia involucrata HOM05D000509 ORTHO05D006393 2.2e-20 102.1 80 66.2
TPR.G37720 Trifolium pratense HOM05D000509 ORTHO05D006393 1.5e-19 99.4 76 65.8
Cpa.g.sc11.3 Carica papaya HOM05D000509 ORTHO05D006393 1.9e-19 99.0 75 69.3
Actinidia12704 Actinidia chinensis HOM05D000509 ORTHO05D006393 4.2e-19 97.8 78 65.4
Dinv41795 Davidia involucrata HOM05D000509 ORTHO05D006393 9.4e-19 96.7 79 64.6
GSVIVG01008341001 Vitis vinifera HOM05D000509 ORTHO05D006393 6.1e-18 94.0 76 63.2
Ca_07920_v3 Cicer arietinum L. HOM05D000509 ORTHO05D006393 8.0e-18 93.6 68 69.1
vmacro20943 Vaccinium macrocarpon HOM05D000509 ORTHO05D006393 1.0e-17 93.2 81 58.0
Eucgr.B00880 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-17 92.4 80 63.8
Eucgr.B00993 Eucalyptus grandis HOM05D000509 ORTHO05D006393 1.8e-17 92.4 80 63.8
Glyma.18G233000 Glycine max HOM05D000509 ORTHO05D006393 1.8e-17 92.4 79 62.0
TWI14G0500 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 1.2e-16 89.7 75 61.3
Manes.10G122200 Manihot esculenta HOM05D000509 ORTHO05D006393 2.0e-16 89.0 78 59.0
VMungo1383G0114 Vigna mungo HOM05D000509 ORTHO05D006393 3.4e-16 88.2 79 59.5
Manes.07G019100 Manihot esculenta HOM05D000509 ORTHO05D006393 7.5e-16 87.0 78 56.4
Rhsim07G0118400 Rhododendron simsii HOM05D000509 ORTHO05D006393 7.5e-16 87.0 81 53.1
Thecc.04G199400 Theobroma cacao HOM05D000509 ORTHO05D006393 7.5e-16 87.0 79 59.5
Phvul.008G062400 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 9.8e-16 86.7 79 59.5
Potri.016G069200 Populus trichocarpa HOM05D000509 ORTHO05D006393 9.8e-16 86.7 76 63.2
Actinidia33421 Actinidia chinensis HOM05D001542 ORTHO05D001416 2.8e-15 85.1 78 59.0
Sabra02G0116600 Salix brachista HOM05D000509 ORTHO05D006393 2.8e-15 85.1 76 60.5
TAR636G2420 Trochodendron aralioides HOM05D000509 ORTHO05D006393 2.8e-15 85.1 78 60.3
Rhsim07G0117300 Rhododendron simsii HOM05D000509 ORTHO05D006393 3.7e-15 84.7 77 55.8
VMungo0540G0837 Vigna mungo HOM05D000509 ORTHO05D006393 3.7e-15 84.7 75 61.3
Duzib151G0093 Durio zibethinus HOM05D000509 ORTHO05D006393 4.8e-15 84.3 78 59.0
Psat3g108360 Pisum sativum HOM05D000509 ORTHO05D006393 4.8e-15 84.3 75 57.3
TWI23G0635 Tripterygium wilfordii HOM05D000509 ORTHO05D006393 4.8e-15 84.3 75 58.7
Rhsim07G0117600 Rhododendron simsii HOM05D000509 ORTHO05D006393 8.3e-15 83.6 63 63.5
Gohir.A02G020500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.8e-14 82.4 75 58.7
Gohir.A08G013720 Gossypium hirsutum HOM05D000509 ORTHO05D006393 1.8e-14 82.4 75 58.7
CSS0014005 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.4e-14 82.0 76 55.3
CSS0014656 Camellia sinensis var. sinensis HOM05D000509 ORTHO05D006393 2.4e-14 82.0 76 55.3
PGR042G3203 Punica granatum HOM05D000509 ORTHO05D006393 2.4e-14 82.0 63 65.1
Phvul.008G065500 Phaseolus vulgaris HOM05D000509 ORTHO05D006393 3.1e-14 81.6 79 55.7
Lalb_Chr03g0038131 Lupinus albus HOM05D000509 ORTHO05D006393 5.4e-14 80.9 79 54.4
Gorai.005G030400 Gossypium raimondii HOM05D000509 ORTHO05D006393 7.0e-14 80.5 78 56.4
Gohir.D02G024500 Gossypium hirsutum HOM05D000509 ORTHO05D006393 9.1e-14 80.1 78 55.1
arahy.Tifrunner.gnm1.ann1.E8SAKG Arachis hypogaea HOM05D000509 ORTHO05D006393 1.2e-13 79.7 81 53.1
arahy.Tifrunner.gnm1.ann1.NYL5F5 Arachis hypogaea HOM05D000509 ORTHO05D006393 1.2e-13 79.7 81 53.1
Nn6g33420 Nelumbo nucifera HOM05D000509 ORTHO05D006393 1.6e-13 79.3 79 57.0
Prupe.2G170600 Prunus persica HOM05D000509 ORTHO05D006393 1.6e-13 79.3 80 56.2
Aqoxy2G02281 Aquilegia oxysepala HOM05D000509 ORTHO05D006393 2.0e-13 79.0 79 50.6
RcHm_v2.0_Chr1g0355271 Rosa chinensis HOM05D000509 ORTHO05D006393 2.0e-13 79.0 77 58.4
FAN06G1484 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.7e-13 78.6 78 57.7
FAN06G3105 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.7e-13 78.6 78 57.7
C08p36230 Brassica napus HOM05D000509 ORTHO05D006393 5.9e-13 77.4 78 51.3
BolC8t51205H Brassica oleracea HOM05D000509 ORTHO05D006393 5.9e-13 77.4 78 51.3
Eucgr.L01454 Eucalyptus grandis HOM05D000509 ORTHO05D006393 5.9e-13 77.4 73 60.3
AT3G61370 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.0e-12 76.6 79 49.4
FvH4_7g14280 Fragaria vesca HOM05D000509 ORTHO05D006393 1.0e-12 76.6 76 57.9
FAN10G1528 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-12 76.6 76 57.9
FAN10G1645 Fragaria x ananassa HOM05D000509 ORTHO05D006393 1.0e-12 76.6 76 57.9
Glyma.09G259300 Glycine max HOM05D000509 ORTHO05D006393 1.0e-12 76.6 77 53.2
MBI17_g24690_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.0e-12 76.6 68 57.4
Thhalv10006311m.g Eutrema salsugineum HOM05D000509 ORTHO05D006393 1.3e-12 76.3 63 58.7
Lj1g0015308 Lotus japonicus HOM05D000509 ORTHO05D006393 5.0e-12 74.3 74 58.1
MD07G1137000 Malus domestica HOM05D000509 ORTHO05D006393 5.0e-12 74.3 75 52.0
DCAR_019105 Daucus carota HOM05D000509 ORTHO05D006393 6.6e-12 73.9 75 50.7
FAN03G2840 Fragaria x ananassa HOM05D000509 ORTHO05D006393 6.6e-12 73.9 76 56.6
GSVIVG01003391001 Vitis vinifera HOM05D000509 ORTHO05D006393 6.6e-12 73.9 56 64.3
Aa31LG1G27330 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.1e-11 73.2 63 58.7
A09p53420 Brassica napus HOM05D000509 ORTHO05D006393 1.1e-11 73.2 63 57.1
BraA09t40768Z Brassica rapa HOM05D000509 ORTHO05D006393 1.1e-11 73.2 63 57.1
MBI17_g24691_MAGBIO Magnolia biondii HOM05D000509 ORTHO05D006393 1.1e-11 73.2 68 52.9
Prupe.1G174800 Prunus persica HOM05D000509 ORTHO05D006393 1.5e-11 72.8 67 58.2
Aa31LG5G5170 Aethionema arabicum HOM05D000509 ORTHO05D006393 1.9e-11 72.4 72 51.4
SalBow6G4776 Salvia bowleyana HOM05D000509 ORTHO05D006393 1.9e-11 72.4 77 46.8
THA.LOC104798540 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 2.5e-11 72.0 63 57.1
Medtr7g077710 Medicago truncatula HOM05D000509 ORTHO05D006393 7.2e-11 70.5 68 54.4
Nitab4.5_0000583g0080 Nicotiana tabacum HOM05D000509 ORTHO05D006393 7.2e-11 70.5 76 51.3
Lsat_1_v5_gn_8_97941 Lactuca sativa HOM05D002211 ORTHO05D002206 9.5e-11 70.1 76 47.4
Sp5g02030 Schrenkiella parvula HOM05D000509 ORTHO05D006393 9.5e-11 70.1 63 58.7
THA.LOC104820589 Tarenaya hassleriana HOM05D000509 ORTHO05D006393 1.2e-10 69.7 71 50.7
CARHR171710 Cardamine hirsuta HOM05D000509 ORTHO05D006393 1.6e-10 69.3 63 54.0
MD01G1060700 Malus domestica HOM05D000509 ORTHO05D006393 1.6e-10 69.3 70 51.4
unitig_0.g1262 Utricularia gibba HOM05D000509 ORTHO05D006393 2.1e-10 68.9 78 51.3
Medtr8g095630 Medicago truncatula HOM05D000509 ORTHO05D006393 2.8e-10 68.6 68 51.5
MSTRG.20833 Avicennia marina HOM05D000509 ORTHO05D006393 3.6e-10 68.2 77 49.4
HanXRQChr09g0257651 Helianthus annuus HOM05D000509 ORTHO05D006393 4.7e-10 67.8 70 50.0
BcaC02g10220 Brassica carinata HOM05D000509 ORTHO05D006393 6.1e-10 67.4 63 58.7
C04p31370 Brassica napus HOM05D000509 ORTHO05D006393 6.1e-10 67.4 63 58.7
EL10Ac8g20190 Beta vulgaris HOM05D000509 ORTHO05D006393 1.0e-09 66.6 79 46.8
ClCG06G003680 Citrullus lanatus HOM05D000509 ORTHO05D006393 1.0e-09 66.6 79 49.4
Hund14886 Selenicereus undatus HOM05D000509 ORTHO05D006393 1.0e-09 66.6 77 49.4
A04p01140 Brassica napus HOM05D000509 ORTHO05D006393 1.8e-09 65.9 79 48.1
BraA04t15830Z Brassica rapa HOM05D000509 ORTHO05D006393 1.8e-09 65.9 79 48.1
FAN01G0359 Fragaria x ananassa HOM05D000509 ORTHO05D006393 2.3e-09 65.5 75 54.7
CANSAT56G2260 Cannabis sativa HOM05D000509 ORTHO05D006393 4.0e-09 64.7 61 57.4
MELO3C021209.2 Cucumis melo HOM05D000509 ORTHO05D006393 4.0e-09 64.7 77 48.1
SGA_v2.0_scaffold95G28834 Striga asiatica HOM05D000509 ORTHO05D006393 4.0e-09 64.7 87 44.8
Atru.chr5.498 Acer truncatum HOM05D000509 ORTHO05D006393 5.2e-09 64.3 48 64.6
EL10Ac4g09051 Beta vulgaris HOM05D000509 ORTHO05D006393 5.2e-09 64.3 63 52.4
AUR62004883 Chenopodium quinoa HOM05D000509 ORTHO05D006393 5.2e-09 64.3 63 52.4
DCAR_015993 Daucus carota HOM05D000509 ORTHO05D006393 5.2e-09 64.3 53 62.3
Nitab4.5_0006762g0030 Nicotiana tabacum HOM05D000509 ORTHO05D006393 5.2e-09 64.3 85 48.2
COL.COLO4_20186 Corchorus olitorius HOM05D000509 ORTHO05D006393 6.8e-09 63.9 114 40.4
Sed0001004 Sechium edule HOM05D000509 ORTHO05D006393 6.8e-09 63.9 81 45.7
BolC4t24686H Brassica oleracea HOM05D000509 ORTHO05D006393 8.9e-09 63.5 63 54.0
CAN.G78.80 Capsicum annuum HOM05D000509 ORTHO05D006393 1.2e-08 63.2 77 46.8
CsaV3_6G000560 Cucumis sativus L. HOM05D000509 ORTHO05D006393 2.0e-08 62.4 77 46.8
Ah.04g163760 Amaranthus hybridus HOM05D000509 ORTHO05D006393 3.4e-08 61.6 62 51.6
ECA233G2837 Erigeron canadensis HOM05D000509 ORTHO05D006393 4.4e-08 61.2 78 46.2
AL5G43630 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 5.7e-08 60.8 79 43.0
Cc02_g38030 Coffea canephora HOM05D000509 ORTHO05D006393 5.7e-08 60.8 68 48.5
Peaxi162Scf00020g00322 Petunia axillaris HOM05D000509 ORTHO05D006393 5.7e-08 60.8 81 44.4
Solyc01g094630.3 Solanum lycopersicum HOM05D000509 ORTHO05D006393 5.7e-08 60.8 77 45.5
Carub.0005s2804 Capsella rubella HOM05D000509 ORTHO05D006393 7.5e-08 60.5 45 64.4
BcaC07g40634 Brassica carinata HOM05D000509 ORTHO05D006393 9.8e-08 60.1 65 50.8
Sopen01g038440 Solanum pennellii HOM05D000509 ORTHO05D006393 9.8e-08 60.1 77 45.5
PGSC0003DMG400000042 Solanum tuberosum HOM05D000509 ORTHO05D006393 9.8e-08 60.1 77 45.5
Migut.B01755 Erythranthe guttata HOM05D000509 ORTHO05D006393 1.3e-07 59.7 77 41.6
Ah.12g064210 Amaranthus hybridus HOM05D000509 ORTHO05D006393 2.8e-07 58.5 61 47.5
Os08g0559700 Oryza sativa ssp. japonica HOM05D000509 ORTHO05D006393 2.8e-07 58.5 80 38.8
AL1G53560 Arabidopsis lyrata HOM05D000509 ORTHO05D006393 3.7e-07 58.2 45 60.0
SEGI_38599 Sequoiadendron giganteum HOM05D000509 ORTHO05D006393 3.7e-07 58.2 77 42.9
AUR62001076 Chenopodium quinoa HOM05D000509 ORTHO05D006393 6.3e-07 57.4 63 47.6
CDE09G0401 Ceratophyllum demersum HOM05D000509 ORTHO05D006393 1.1e-06 56.6 79 40.5
AT4G07940 Arabidopsis thaliana HOM05D000509 ORTHO05D006393 1.8e-06 55.8 53 52.8
PSO478G1119 Papaver somniferum HOM05D000509 ORTHO05D006393 2.4e-06 55.5 62 46.8
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 2.4e-06 55.5 79 38.0
PSO782G0796 Papaver somniferum HOM05D000509 ORTHO05D006393 4.1e-06 54.7 63 46.0


User provided reference genes

Program Settings