Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 1.4e-58 229.6 133 100.0
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 2.2e-35 152.5 134 72.4
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 5.5e-34 147.9 136 66.9
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 8.0e-33 144.1 134 69.4
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 2.0e-20 102.8 121 57.9
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 1.0e-19 100.5 128 53.9
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 1.7e-19 99.8 127 52.8
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 2.3e-19 99.4 128 56.2
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 6.6e-19 97.8 125 56.0
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 6.1e-17 91.3 100 58.0
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 6.1e-17 91.3 120 51.7
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 1.4e-16 90.1 130 50.0
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 2.3e-16 89.4 127 48.8
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 3.0e-16 89.0 127 48.8
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 5.2e-16 88.2 129 47.3
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 5.2e-16 88.2 92 59.8
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 8.9e-16 87.4 122 49.2
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 8.9e-16 87.4 85 62.4
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 2.0e-15 86.3 129 50.4
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 2.6e-15 85.9 77 70.1
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 3.4e-15 85.5 124 47.6
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 1.7e-14 83.2 129 49.6
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 2.2e-14 82.8 74 62.2
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 3.7e-14 82.0 115 47.8
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 6.3e-14 81.3 117 48.7
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 6.3e-14 81.3 128 49.2
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 1.4e-13 80.1 98 52.0
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 2.4e-13 79.3 122 45.1
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.2e-13 79.0 122 44.3
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 9.2e-13 77.4 132 45.5
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 2.0e-12 76.3 58 70.7
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 3.5e-12 75.5 50 82.0
HanXRQChr05g0154181 Helianthus annuus HOM05D008378 ORTHO05D010346 2.3e-11 72.8 117 47.9
CARHR258450 Cardamine hirsuta HOM05D008378 ORTHO05D010346 5.0e-11 71.6 111 48.6
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 6.6e-11 71.2 109 50.5
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 8.6e-11 70.9 135 41.5
Lsat_1_v5_gn_5_14380 Lactuca sativa HOM05D003772 ORTHO05D004509 8.6e-11 70.9 127 42.5
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 8.6e-11 70.9 73 57.5
AT5G50175 Arabidopsis thaliana HOM05D008378 ORTHO05D010346 1.9e-10 69.7 112 46.4
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.3e-10 68.9 112 48.2
Lj4g0016291 Lotus japonicus HOM05D020160 ORTHO05D010346 4.3e-10 68.6 119 48.7
Aqoxy5G03757 Aquilegia oxysepala HOM05D008378 ORTHO05D010346 5.6e-10 68.2 86 50.0
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 5.6e-10 68.2 111 48.6
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 5.6e-10 68.2 53 69.8
C03p33390 Brassica napus HOM05D008378 ORTHO05D010346 9.5e-10 67.4 111 45.0
BolC3t15661H Brassica oleracea HOM05D008378 ORTHO05D010346 9.5e-10 67.4 111 45.0
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 1.6e-09 66.6 131 42.7
BcaB01g02914 Brassica carinata HOM05D008378 ORTHO05D010346 2.8e-09 65.9 111 44.1
BcaC01g04828 Brassica carinata HOM05D008378 ORTHO05D010346 2.8e-09 65.9 111 44.1
Manes.06G110000 Manihot esculenta HOM05D008378 ORTHO05D010346 2.8e-09 65.9 104 47.1
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 2.8e-09 65.9 121 43.0
A03p27680 Brassica napus HOM05D008378 ORTHO05D010346 4.7e-09 65.1 110 44.5
BraA03t11981Z Brassica rapa HOM05D008378 ORTHO05D010346 4.7e-09 65.1 110 44.5
Peaxi162Scf00089g01325 Petunia axillaris HOM05D008378 ORTHO05D010346 6.1e-09 64.7 84 46.4
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 8.0e-09 64.3 98 48.0
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 3.1e-08 62.4 85 50.6
AL8G24190 Arabidopsis lyrata HOM05D008378 ORTHO05D010346 3.1e-08 62.4 107 43.9
Carub.0008s1019 Capsella rubella HOM05D008378 ORTHO05D010346 3.1e-08 62.4 112 43.8
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 4.0e-08 62.0 62 50.0
Glyma.17G084800 Glycine max HOM05D020160 ORTHO05D010346 5.2e-08 61.6 120 39.2
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 5.2e-08 61.6 67 47.8
Sabra15G0107100 Salix brachista HOM05D002488 ORTHO05D002613 6.8e-08 61.2 91 48.4
Sopen06g028050 Solanum pennellii HOM05D008378 ORTHO05D010346 6.8e-08 61.2 64 51.6
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 6.8e-08 61.2 81 53.1
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 1.5e-07 60.1 88 43.2
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.5e-07 60.1 76 55.3
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 2.0e-07 59.7 101 43.6
PGSC0003DMG400027074 Solanum tuberosum HOM05D008378 ORTHO05D010346 2.0e-07 59.7 81 45.7
Aa31sc170G40 Aethionema arabicum HOM05D008378 ORTHO05D010346 2.6e-07 59.3 107 41.1
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 2.6e-07 59.3 123 43.1
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 2.6e-07 59.3 92 51.1
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 3.4e-07 58.9 98 44.9
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 3.4e-07 58.9 98 43.9
Phvul.003G204900 Phaseolus vulgaris HOM05D020160 ORTHO05D010346 3.4e-07 58.9 83 48.2
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 4.4e-07 58.5 93 47.3
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.8e-07 58.2 66 48.5
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 5.8e-07 58.2 98 43.9
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 5.8e-07 58.2 93 41.9
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 5.8e-07 58.2 98 45.9
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 7.5e-07 57.8 92 44.6
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 7.5e-07 57.8 93 47.3
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 7.5e-07 57.8 111 42.3
Ca_14276_v3 Cicer arietinum L. HOM05D020160 ORTHO05D010346 9.8e-07 57.4 102 42.2
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 9.8e-07 57.4 91 44.0
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 1.3e-06 57.0 94 44.7
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 1.3e-06 57.0 93 47.3
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 1.7e-06 56.6 98 42.9
Solyc06g071760.1 Solanum lycopersicum HOM05D008378 ORTHO05D010346 1.7e-06 56.6 119 36.1
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 1.7e-06 56.6 93 45.2
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.7e-06 56.6 122 40.2
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 2.2e-06 56.2 69 49.3
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 2.2e-06 56.2 94 44.7
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 2.2e-06 56.2 112 41.1
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 2.2e-06 56.2 94 44.7
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 2.2e-06 56.2 98 45.9
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 2.9e-06 55.8 95 42.1
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.9e-06 55.8 122 40.2
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.7e-06 55.5 135 40.7
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 3.7e-06 55.5 85 47.1
VMungo1215G1140 Vigna mungo HOM05D020160 ORTHO05D010346 3.7e-06 55.5 117 41.0
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 4.9e-06 55.1 66 54.5
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 4.9e-06 55.1 90 44.4
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.9e-06 55.1 90 44.4
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.9e-06 55.1 90 44.4
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 4.9e-06 55.1 90 44.4
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 4.9e-06 55.1 88 47.7
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 4.9e-06 55.1 100 42.0
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 4.9e-06 55.1 74 50.0
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 4.9e-06 55.1 93 43.0
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 6.4e-06 54.7 113 39.8
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 6.4e-06 54.7 64 53.1
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 8.3e-06 54.3 92 41.3
Gohir.A01G016500 Gossypium hirsutum HOM05D003772 ORTHO05D004509 8.3e-06 54.3 88 47.7
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 8.3e-06 54.3 135 40.0
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 8.3e-06 54.3 135 40.0
Nitab4.5_0001683g0020 Nicotiana tabacum HOM05D008378 ORTHO05D010346 8.3e-06 54.3 77 41.6
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 8.3e-06 54.3 65 43.1


User provided reference genes

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