Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005926 Quercus lobata HOM05D007328 ORTHO05D009246 3.9e-51 204.5 105 100.0
CiPaw.12G033600 Carya illinoinensis HOM05D007328 ORTHO05D009246 9.1e-40 166.8 105 82.9
Haze_07631 Corylus avellana HOM05D007328 ORTHO05D009246 2.6e-39 165.2 106 84.0
Prupe.5G161600 Prunus persica HOM05D007328 ORTHO05D009246 7.7e-39 163.7 102 80.4
GSVIVG01007592001 Vitis vinifera HOM05D007328 ORTHO05D009246 1.0e-38 163.3 105 77.1
CANSAT80G1532 Cannabis sativa HOM05D007328 ORTHO05D009246 1.3e-38 162.9 102 78.4
Duzib205G1420 Durio zibethinus HOM05D007328 ORTHO05D009246 3.2e-37 158.3 106 78.3
PSO067G0004 Papaver somniferum HOM05D007328 ORTHO05D009246 3.2e-37 158.3 105 76.2
Dinv38499 Davidia involucrata HOM05D007328 ORTHO05D009246 7.2e-37 157.1 101 78.2
TAR629G2292 Trochodendron aralioides HOM05D007328 ORTHO05D009246 9.4e-37 156.8 100 81.0
Rhsim12G0170200 Rhododendron simsii HOM05D007328 ORTHO05D009246 1.6e-36 156.0 100 79.0
CSS0000986 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 2.1e-36 155.6 102 75.5
Sc04g0001180 Simmondsia chinensis HOM05D007328 ORTHO05D009246 4.7e-36 154.5 100 77.0
RcHm_v2.0_Chr7g0191941 Rosa chinensis HOM05D007328 ORTHO05D009246 6.1e-36 154.1 103 78.6
PGR044G2544 Punica granatum HOM05D007328 ORTHO05D009246 1.0e-35 153.3 104 77.9
ClCG06G017550 Citrullus lanatus HOM05D007328 ORTHO05D009246 2.3e-35 152.1 102 74.5
Sed0026647 Sechium edule HOM05D007328 ORTHO05D009246 3.9e-35 151.4 102 74.5
Ciclev10022963m.g Citrus clementina HOM05D007328 ORTHO05D009246 5.1e-35 151.0 108 73.1
PSO063G4259 Papaver somniferum HOM05D007328 ORTHO05D009246 6.7e-35 150.6 95 78.9
Aqoxy5G03651 Aquilegia oxysepala HOM05D007328 ORTHO05D009246 8.8e-35 150.2 104 74.0
DCAR_007459 Daucus carota HOM05D007328 ORTHO05D009246 2.0e-34 149.1 101 74.3
Thecc.03G118600 Theobroma cacao HOM05D007328 ORTHO05D009246 2.0e-34 149.1 108 75.0
FAN18G0524 Fragaria x ananassa HOM05D007328 ORTHO05D009246 3.3e-34 148.3 105 76.2
Sp5g33820 Schrenkiella parvula HOM05D007328 ORTHO05D009246 7.4e-34 147.1 103 73.8
FvH4_5g06690 Fragaria vesca HOM05D007328 ORTHO05D009246 1.3e-33 146.4 105 75.2
FAN04G3262 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.7e-33 146.0 105 75.2
FAN13G1360 Fragaria x ananassa HOM05D007328 ORTHO05D009246 1.7e-33 146.0 105 75.2
Potri.012G090600 Populus trichocarpa HOM05D007328 ORTHO05D009246 1.7e-33 146.0 103 75.7
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.2e-33 145.6 103 72.8
Nitab4.5_0003542g0010 Nicotiana tabacum HOM05D007328 ORTHO05D009246 2.2e-33 145.6 103 68.0
Solyc03g111790.4 Solanum lycopersicum HOM05D007328 ORTHO05D009246 2.2e-33 145.6 103 68.9
Sopen03g030890 Solanum pennellii HOM05D007328 ORTHO05D009246 2.2e-33 145.6 103 68.9
AT1G78790 Arabidopsis thaliana HOM05D007328 ORTHO05D009246 3.7e-33 144.8 103 71.8
Carub.0002s1493 Capsella rubella HOM05D007328 ORTHO05D009246 3.7e-33 144.8 103 71.8
AL2G39190 Arabidopsis lyrata HOM05D007328 ORTHO05D009246 4.8e-33 144.4 103 70.9
BcaC08g47455 Brassica carinata HOM05D007328 ORTHO05D009246 6.3e-33 144.1 103 71.8
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 6.3e-33 144.1 103 71.8
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 6.3e-33 144.1 103 71.8
BraA07t31907Z Brassica rapa HOM05D007328 ORTHO05D009246 6.3e-33 144.1 103 71.8
Nitab4.5_0000510g0070 Nicotiana tabacum HOM05D007328 ORTHO05D009246 6.3e-33 144.1 103 68.0
PGSC0003DMG400015227 Solanum tuberosum HOM05D007328 ORTHO05D009246 6.3e-33 144.1 103 68.0
Duzib068G0271 Durio zibethinus HOM05D007328 ORTHO05D009246 8.2e-33 143.7 107 70.1
TWI23G0848 Tripterygium wilfordii HOM05D007328 ORTHO05D009246 1.1e-32 143.3 99 72.7
Cc04_g10870 Coffea canephora HOM05D007328 ORTHO05D009246 1.4e-32 142.9 99 74.7
CsaV3_1G000900 Cucumis sativus L. HOM05D007328 ORTHO05D009246 1.4e-32 142.9 105 72.4
Hma1.2p1_2431F.1_g322030 Hydrangea macrophylla HOM05D007328 ORTHO05D009246 2.4e-32 142.1 100 76.0
Gohir.D12G189600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 4.1e-32 141.4 106 70.8
COL.COLO4_19806 Corchorus olitorius HOM05D007328 ORTHO05D009246 5.3e-32 141.0 102 76.5
Gorai.008G203400 Gossypium raimondii HOM05D007328 ORTHO05D009246 7.0e-32 140.6 106 70.8
CAN.G126.95 Capsicum annuum HOM05D007328 ORTHO05D009246 1.2e-31 139.8 99 68.7
Glyma.05G043400 Glycine max HOM05D007328 ORTHO05D009246 1.2e-31 139.8 102 73.5
Gohir.A12G186600 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.6e-31 139.4 106 70.8
Phvul.003G206900 Phaseolus vulgaris HOM05D007328 ORTHO05D009246 2.0e-31 139.0 102 73.5
THA.LOC104809276 Tarenaya hassleriana HOM05D007328 ORTHO05D009246 2.0e-31 139.0 98 73.5
Ca_19431_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 2.6e-31 138.7 102 70.6
Ah.08g218420 Amaranthus hybridus HOM05D007328 ORTHO05D009246 4.5e-31 137.9 100 72.0
ECA246G4123 Erigeron canadensis HOM05D007328 ORTHO05D009246 4.5e-31 137.9 100 69.0
Glyma.17G125900 Glycine max HOM05D007328 ORTHO05D009246 7.7e-31 137.1 102 71.6
Lsat_1_v5_gn_5_12821 Lactuca sativa HOM05D007328 ORTHO05D009246 1.0e-30 136.7 100 69.0
Lj4g0027684 Lotus japonicus HOM05D007328 ORTHO05D009246 1.0e-30 136.7 102 70.6
Hund05612 Selenicereus undatus HOM05D007328 ORTHO05D009246 1.0e-30 136.7 102 68.6
Lsat_1_v5_gn_3_90700 Lactuca sativa HOM05D007328 ORTHO05D009246 1.3e-30 136.3 100 70.0
MELO3C026242.2 Cucumis melo HOM05D007328 ORTHO05D009246 1.7e-30 136.0 105 69.5
Medtr4g104430 Medicago truncatula HOM05D007328 ORTHO05D009246 2.9e-30 135.2 102 68.6
CARHR072340 Cardamine hirsuta HOM05D007328 ORTHO05D009246 5.0e-30 134.4 99 69.7
Migut.D02033 Erythranthe guttata HOM05D007328 ORTHO05D009246 6.5e-30 134.0 102 66.7
SGA_v2.0_scaffold7G04170 Striga asiatica HOM05D007328 ORTHO05D009246 6.5e-30 134.0 102 67.6
Gorai.006G269700 Gossypium raimondii HOM05D007328 ORTHO05D009246 8.5e-30 133.7 106 66.0
arahy.Tifrunner.gnm1.ann1.RLPB8M Arachis hypogaea HOM05D007328 ORTHO05D009246 2.5e-29 132.1 98 68.4
Gohir.A09G244400 Gossypium hirsutum HOM05D007328 ORTHO05D009246 2.5e-29 132.1 107 68.2
FAN08G2248 Fragaria x ananassa HOM05D007328 ORTHO05D009246 3.2e-29 131.7 122 63.1
arahy.Tifrunner.gnm1.ann1.VT7US1 Arachis hypogaea HOM05D007328 ORTHO05D009246 7.2e-29 130.6 94 70.2
MSTRG.4340 Avicennia marina HOM05D007328 ORTHO05D009246 7.2e-29 130.6 102 64.7
TPR.G37571 Trifolium pratense HOM05D007328 ORTHO05D009246 9.4e-29 130.2 104 65.4
Gohir.D09G245301 Gossypium hirsutum HOM05D007328 ORTHO05D009246 1.2e-28 129.8 106 64.2
SHI17354 Sapria himalayana HOM05D007328 ORTHO05D009246 2.7e-28 128.6 104 66.3
Lalb_Chr07g0183141 Lupinus albus HOM05D007328 ORTHO05D009246 6.1e-28 127.5 102 68.6
HanXRQChr08g0235201 Helianthus annuus HOM05D007328 ORTHO05D009246 1.4e-27 126.3 95 68.4
HPP92_017655 Vanilla planifolia HOM05D007328 ORTHO05D009246 9.7e-26 120.2 100 64.0
Psat4g062040 Pisum sativum HOM05D007328 ORTHO05D009246 2.8e-25 118.6 88 69.3
Os04g0481500 Oryza sativa ssp. japonica HOM05D007328 ORTHO05D009246 1.1e-24 116.7 112 60.7
CSS0030634 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 5.3e-24 114.4 105 59.0
Sabra12G0065400 Salix brachista HOM05D007328 ORTHO05D009246 9.1e-24 113.6 80 77.5
Pp3c15_7370 Physcomitrium patens HOM05D007328 ORTHO05D009246 2.0e-23 112.5 108 56.5
QL10p005934 Quercus lobata HOM05D007328 ORTHO05D009246 2.0e-23 112.5 64 95.3
SalBow6G3374 Salvia bowleyana HOM05D007328 ORTHO05D009246 4.5e-23 111.3 95 60.0
AagrBONN_evm.TU.Sc2ySwM_369.482 Anthoceros agrestis HOM05D007328 ORTHO05D009246 2.2e-22 109.0 106 55.7
BolC6t40286H Brassica oleracea HOM05D007328 ORTHO05D009246 3.8e-22 108.2 80 71.2
CDE02G4603 Ceratophyllum demersum HOM05D007328 ORTHO05D009246 8.5e-22 107.1 109 54.1
C03p92780 Brassica napus HOM05D007328 ORTHO05D009246 1.1e-21 106.7 80 70.0
unitig_62.g23226 Utricularia gibba HOM05D007328 ORTHO05D009246 5.5e-21 104.4 99 55.6
Manes.06G112300 Manihot esculenta HOM05D007328 ORTHO05D009246 2.7e-20 102.1 89 65.2
vmacro16689 Vaccinium macrocarpon HOM05D007328 ORTHO05D009246 4.7e-20 101.3 66 78.8
Ca_30674_v3 Cicer arietinum L. HOM05D007328 ORTHO05D009246 5.2e-19 97.8 66 77.3
Nn3g16640 Nelumbo nucifera HOM05D007328 ORTHO05D009246 2.6e-18 95.5 67 67.2
Aa31LG4G2240 Aethionema arabicum HOM05D007328 ORTHO05D009246 3.4e-18 95.1 66 77.3
AUR62001234 Chenopodium quinoa HOM05D007328 ORTHO05D009246 3.7e-17 91.7 60 81.7
Atru.chr9.1808 Acer truncatum HOM05D007328 ORTHO05D009246 1.4e-16 89.7 105 55.2
SEGI_23865 Sequoiadendron giganteum HOM05D007328 ORTHO05D009246 1.6e-15 86.3 65 67.7
Mapoly0166s0013 Marchantia polymorpha HOM05D007328 ORTHO05D009246 4.5e-15 84.7 79 54.4
ECA233G5563 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.5e-14 80.9 95 52.6
MBI10_g15972_MAGBIO Magnolia biondii HOM05D007328 ORTHO05D009246 8.5e-14 80.5 86 58.1
Actinidia08840 Actinidia chinensis HOM05D007328 ORTHO05D009246 1.5e-13 79.7 48 83.3
ATR0199G045 Amborella trichopoda HOM05D007328 ORTHO05D009246 1.5e-13 79.7 48 87.5
Thhalv10019789m.g Eutrema salsugineum HOM05D007328 ORTHO05D009246 9.5e-13 77.0 51 78.4
SMO203G0244 Selaginella moellendorffii HOM05D007328 ORTHO05D009246 8.8e-11 70.5 52 67.3
CSS0039715 Camellia sinensis var. sinensis HOM05D007328 ORTHO05D009246 7.5e-10 67.4 38 86.8
MCO11G116 Micromonas commoda HOM05D007328 ORTHO05D009246 7.5e-10 67.4 104 39.4
SMO203G0278 Selaginella moellendorffii HOM05D000001 ORTHO05D375656 2.9e-06 55.5 61 50.8


User provided reference genes

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