Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005646 Quercus lobata HOM05D003167 ORTHO05D003929 4.2e-122 441.4 233 100.0
QL07p041296 Quercus lobata HOM05D003167 ORTHO05D003929 1.3e-57 227.3 126 79.4
VMungo0720G2588 Vigna mungo HOM05D003167 ORTHO05D003929 1.3e-57 227.3 126 79.4
Ciclev10011207m.g Citrus clementina HOM05D003167 ORTHO05D003929 2.1e-57 226.5 126 78.6
SEGI_34935 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 2.1e-57 226.5 134 76.1
Manes.08G017200 Manihot esculenta HOM05D003167 ORTHO05D003929 6.2e-57 224.9 126 78.6
CiPaw.10G002600 Carya illinoinensis HOM05D003167 ORTHO05D003929 8.1e-57 224.6 126 78.6
MSTRG.21603 Avicennia marina HOM05D003167 ORTHO05D003929 1.1e-56 224.2 126 78.6
PGR142G4079 Punica granatum HOM05D003167 ORTHO05D003929 1.4e-56 223.8 126 77.8
Gorai.009G410400 Gossypium raimondii HOM05D003167 ORTHO05D003929 1.8e-56 223.4 126 77.8
Potri.006G118700 Populus trichocarpa HOM05D003167 ORTHO05D003929 1.8e-56 223.4 126 77.8
Sabra06G0093300 Salix brachista HOM05D003167 ORTHO05D003929 1.8e-56 223.4 126 77.8
Sed0027110 Sechium edule HOM05D003167 ORTHO05D003929 2.4e-56 223.0 126 77.8
GSVIVG01033725001 Vitis vinifera HOM05D003167 ORTHO05D003929 2.4e-56 223.0 126 77.0
CDE04G1328 Ceratophyllum demersum HOM05D003167 ORTHO05D003929 3.1e-56 222.6 134 74.6
HanXRQChr11g0325191 Helianthus annuus HOM05D003167 ORTHO05D003929 3.1e-56 222.6 126 77.8
Prupe.7G122300 Prunus persica HOM05D003167 ORTHO05D003929 3.1e-56 222.6 126 77.8
Cc10_g12700 Coffea canephora HOM05D003167 ORTHO05D003929 4.0e-56 222.2 126 78.6
FAN05G5009 Fragaria x ananassa HOM05D003167 ORTHO05D003929 4.0e-56 222.2 126 77.0
vmacro07353 Vaccinium macrocarpon HOM05D003167 ORTHO05D003929 4.0e-56 222.2 126 77.8
Ah.15g091340 Amaranthus hybridus HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
AUR62042696 Chenopodium quinoa HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
ECA238G2918 Erigeron canadensis HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
FAN02G2003 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.0
FAN05G3981 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.0
Lj3C1008T14 Lonicera japonica HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
Lalb_Chr25g0288761 Lupinus albus HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
MD14G1096200 Malus domestica HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
SGA_v2.0_scaffold312G48279 Striga asiatica HOM05D003167 ORTHO05D003929 5.3e-56 221.9 126 77.8
Migut.G00710 Erythranthe guttata HOM05D003167 ORTHO05D003929 9.0e-56 221.1 126 77.8
Lsat_1_v5_gn_2_23140 Lactuca sativa HOM05D003167 ORTHO05D003929 9.0e-56 221.1 126 77.8
Peaxi162Scf00732g00028 Petunia axillaris HOM05D003167 ORTHO05D003929 9.0e-56 221.1 126 78.6
RcHm_v2.0_Chr3g0471451 Rosa chinensis HOM05D003167 ORTHO05D003929 9.0e-56 221.1 126 77.8
Hma1.2p1_0564F.1_g179130 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 1.2e-55 220.7 126 77.8
Phvul.001G184000 Phaseolus vulgaris HOM05D003167 ORTHO05D003929 1.2e-55 220.7 207 58.0
FAN05G3544 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.5e-55 220.3 126 76.2
SalBow8G1467 Salvia bowleyana HOM05D003167 ORTHO05D003929 2.0e-55 219.9 126 77.0
SalBow8G3947 Salvia bowleyana HOM05D003167 ORTHO05D003929 2.0e-55 219.9 126 77.0
VMungo1383G0302 Vigna mungo HOM05D003167 ORTHO05D003929 2.0e-55 219.9 207 58.0
Pp3c27_420 Physcomitrium patens HOM05D003167 ORTHO05D003929 2.6e-55 219.5 202 55.4
Glyma.19G188800 Glycine max HOM05D003167 ORTHO05D003929 3.4e-55 219.2 202 57.9
Medtr1g061860 Medicago truncatula HOM05D003167 ORTHO05D003929 3.4e-55 219.2 207 57.5
Aqoxy1G01021 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 4.5e-55 218.8 126 75.4
arahy.Tifrunner.gnm1.ann1.P92TZX Arachis hypogaea HOM05D003167 ORTHO05D003929 4.5e-55 218.8 204 56.9
arahy.Tifrunner.gnm1.ann1.WY8M22 Arachis hypogaea HOM05D003167 ORTHO05D003929 4.5e-55 218.8 204 56.9
ECA232G4074 Erigeron canadensis HOM05D003167 ORTHO05D003929 4.5e-55 218.8 126 77.0
Nitab4.5_0002027g0020 Nicotiana tabacum HOM05D003167 ORTHO05D003929 5.8e-55 218.4 126 77.0
Oeu027192.1 Olea europaea HOM05D003167 ORTHO05D003929 5.8e-55 218.4 126 77.0
Peaxi162Scf01089g10011 Petunia axillaris HOM05D003167 ORTHO05D003929 5.8e-55 218.4 126 77.0
SMO169G0108 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 5.8e-55 218.4 215 54.0
CAN.G738.3 Capsicum annuum HOM05D003167 ORTHO05D003929 7.6e-55 218.0 126 76.2
SHI27742 Sapria himalayana HOM05D003167 ORTHO05D003929 7.6e-55 218.0 138 71.0
ATR0724G050 Amborella trichopoda HOM05D003167 ORTHO05D003929 9.9e-55 217.6 218 55.5
AL1G13510 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 9.9e-55 217.6 126 76.2
AT1G03910 Arabidopsis thaliana HOM05D003167 ORTHO05D003929 9.9e-55 217.6 126 76.2
BcaC07g42222 Brassica carinata HOM05D003167 ORTHO05D003929 9.9e-55 217.6 126 77.0
A10p02430 Brassica napus HOM05D003167 ORTHO05D003929 9.9e-55 217.6 126 77.0
Cpa.g.sc5.120 Carica papaya HOM05D003167 ORTHO05D003929 9.9e-55 217.6 205 57.6
Sp1g02770 Schrenkiella parvula HOM05D003167 ORTHO05D003929 9.9e-55 217.6 126 76.2
Psat6g078080 Pisum sativum HOM05D003167 ORTHO05D003929 1.3e-54 217.2 207 57.0
PGSC0003DMG400040194 Solanum tuberosum HOM05D003167 ORTHO05D003929 1.3e-54 217.2 126 76.2
CANSAT80G1311 Cannabis sativa HOM05D003167 ORTHO05D003929 1.7e-54 216.9 205 55.6
CSS0014862 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 2.9e-54 216.1 206 57.8
CSS0043785 Camellia sinensis var. sinensis HOM05D003167 ORTHO05D003929 2.9e-54 216.1 206 57.8
AUR62040188 Chenopodium quinoa HOM05D003167 ORTHO05D003929 2.9e-54 216.1 214 57.0
CsaV3_3G036590 Cucumis sativus L. HOM05D003167 ORTHO05D003929 2.9e-54 216.1 197 58.4
TPR.G27088 Trifolium pratense HOM05D003167 ORTHO05D003929 2.9e-54 216.1 207 56.5
ClCG10G019590 Citrullus lanatus HOM05D003167 ORTHO05D003929 3.8e-54 215.7 197 57.9
MELO3C009413.2 Cucumis melo HOM05D003167 ORTHO05D003929 3.8e-54 215.7 204 56.9
Glyma.03G188600 Glycine max HOM05D003167 ORTHO05D003929 3.8e-54 215.7 202 56.9
A09p68130 Brassica napus HOM05D003167 ORTHO05D003929 4.9e-54 215.3 126 76.2
C08p52570 Brassica napus HOM05D003167 ORTHO05D003929 4.9e-54 215.3 126 76.2
BolC8t52784H Brassica oleracea HOM05D003167 ORTHO05D003929 4.9e-54 215.3 126 76.2
BraA09t42148Z Brassica rapa HOM05D003167 ORTHO05D003929 4.9e-54 215.3 126 76.2
Lj1g0005916 Lotus japonicus HOM05D003167 ORTHO05D003929 4.9e-54 215.3 207 56.5
Psat3g037760 Pisum sativum HOM05D003167 ORTHO05D003929 4.9e-54 215.3 217 56.2
TAR636G1269 Trochodendron aralioides HOM05D003167 ORTHO05D003929 4.9e-54 215.3 126 73.0
THA.LOC104816364 Tarenaya hassleriana HOM05D003167 ORTHO05D003929 6.4e-54 214.9 212 57.1
Lalb_Chr21g0315291 Lupinus albus HOM05D003167 ORTHO05D003929 8.4e-54 214.5 206 57.8
PSO339G0841 Papaver somniferum HOM05D003167 ORTHO05D003929 8.4e-54 214.5 202 55.9
COL.COLO4_22264 Corchorus olitorius HOM05D003167 ORTHO05D003929 1.1e-53 214.2 204 57.8
TPR.G31678 Trifolium pratense HOM05D003167 ORTHO05D003929 1.1e-53 214.2 217 55.8
Haze_19497 Corylus avellana HOM05D003167 ORTHO05D003929 1.4e-53 213.8 207 56.5
Gohir.A04G067800 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.4e-53 213.8 207 56.0
Gohir.D04G106400 Gossypium hirsutum HOM05D003167 ORTHO05D003929 1.4e-53 213.8 207 56.0
Duzib093G1992 Durio zibethinus HOM05D003167 ORTHO05D003929 1.9e-53 213.4 207 56.0
Eucgr.K02416 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.9e-53 213.4 206 57.3
Ca_08942_v3 Cicer arietinum L. HOM05D003167 ORTHO05D003929 2.4e-53 213.0 215 54.9
Dinv35839 Davidia involucrata HOM05D003167 ORTHO05D003929 2.4e-53 213.0 206 57.3
Hund04098 Selenicereus undatus HOM05D003167 ORTHO05D003929 2.4e-53 213.0 207 55.6
SEGI_27063 Sequoiadendron giganteum HOM05D003167 ORTHO05D003929 3.2e-53 212.6 124 76.6
Zm00001eb061170 Zea mays HOM05D003167 ORTHO05D003929 3.2e-53 212.6 205 56.6
Medtr7g102700 Medicago truncatula HOM05D003167 ORTHO05D003929 4.2e-53 212.2 215 54.4
FvH4_6g17312 Fragaria vesca HOM05D003167 ORTHO05D003929 5.5e-53 211.8 195 57.4
FAN14G2907 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.5e-53 211.8 195 57.4
Mapoly0001s0156 Marchantia polymorpha HOM05D003167 ORTHO05D003929 7.1e-53 211.5 216 51.9
PSO210G0575 Papaver somniferum HOM05D003167 ORTHO05D003929 7.1e-53 211.5 126 73.8
TAR623G0013 Trochodendron aralioides HOM05D003167 ORTHO05D003929 7.1e-53 211.5 205 57.6
EL10Ac7g16722 Beta vulgaris HOM05D003167 ORTHO05D003929 9.3e-53 211.1 219 54.8
Solyc10g085410.3 Solanum lycopersicum HOM05D003167 ORTHO05D003929 9.3e-53 211.1 206 58.3
Sopen10g034860 Solanum pennellii HOM05D003167 ORTHO05D003929 9.3e-53 211.1 206 58.3
Thecc.05G076300 Theobroma cacao HOM05D003167 ORTHO05D003929 9.3e-53 211.1 205 57.1
CARHR003250 Cardamine hirsuta HOM05D003167 ORTHO05D003929 1.2e-52 210.7 203 56.2
Aa31LG1G9100 Aethionema arabicum HOM05D003167 ORTHO05D003929 2.1e-52 209.9 208 55.3
DCAR_020795 Daucus carota HOM05D003167 ORTHO05D003929 2.1e-52 209.9 205 56.6
Cfa016494 Carpinus fangiana HOM05D003167 ORTHO05D003929 2.7e-52 209.5 207 55.6
C05p02250 Brassica napus HOM05D003167 ORTHO05D003929 4.6e-52 208.8 209 55.5
BolC5t29003H Brassica oleracea HOM05D003167 ORTHO05D003929 4.6e-52 208.8 209 55.5
Thhalv10006994m.g Eutrema salsugineum HOM05D003167 ORTHO05D003929 4.6e-52 208.8 191 58.1
Atru.chr8.1695 Acer truncatum HOM05D003167 ORTHO05D003929 7.9e-52 208.0 206 53.9
Carub.0001s0306 Capsella rubella HOM05D003167 ORTHO05D003929 7.9e-52 208.0 203 55.7
Potri.001G242900 Populus trichocarpa HOM05D003167 ORTHO05D003929 1.8e-51 206.8 266 45.1
Carub.0004s1866 Capsella rubella HOM05D003167 ORTHO05D003929 5.1e-51 205.3 190 56.8
Thecc.08G192100 Theobroma cacao HOM05D003167 ORTHO05D003929 2.5e-50 203.0 134 70.1
BcaNung06144 Brassica carinata HOM05D003167 ORTHO05D003929 3.3e-50 202.6 126 69.8
COL.COLO4_36480 Corchorus olitorius HOM05D003167 ORTHO05D003929 4.3e-50 202.2 235 49.4
Atru.chr10.2404 Acer truncatum HOM05D003167 ORTHO05D003929 9.6e-50 201.1 127 71.7
Lj8P306T56 Lonicera japonica HOM05D003167 ORTHO05D003929 1.6e-49 200.3 215 50.7
Thecc.06G013600 Theobroma cacao HOM05D003167 ORTHO05D003929 1.6e-49 200.3 203 53.7
Hma1.2p1_0033F.1_g020920 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 4.8e-49 198.7 127 70.1
Hma1.2p1_2996F.1_g331470 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 8.2e-49 198.0 127 70.1
Aqoxy1G01022 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 1.4e-48 197.2 207 52.2
RcHm_v2.0_Chr2g0092191 Rosa chinensis HOM05D003167 ORTHO05D003929 1.4e-48 197.2 135 65.9
FAN26G0867 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.8e-48 196.8 203 51.7
FAN26G2184 Fragaria x ananassa HOM05D003167 ORTHO05D003929 1.8e-48 196.8 203 51.7
Cre09.g398650 Chlamydomonas reinhardtii HOM05D003167 ORTHO05D003929 3.1e-48 196.1 173 56.1
FAN19G3088 Fragaria x ananassa HOM05D003167 ORTHO05D003929 3.1e-48 196.1 203 51.2
FAN23G0551 Fragaria x ananassa HOM05D003167 ORTHO05D003929 6.9e-48 194.9 200 52.0
FvH4_1g06450 Fragaria vesca HOM05D003167 ORTHO05D003929 1.5e-47 193.7 203 49.8
SMO364G0524 Selaginella moellendorffii HOM05D003167 ORTHO05D003929 2.0e-47 193.4 125 70.4
AL4G33010 Arabidopsis lyrata HOM05D003167 ORTHO05D003929 1.0e-46 191.0 206 52.9
Cc07_g17880 Coffea canephora HOM05D003167 ORTHO05D003929 1.3e-46 190.7 124 66.9
CARHR131270 Cardamine hirsuta HOM05D003167 ORTHO05D003929 8.4e-46 188.0 130 65.4
AUR62018820 Chenopodium quinoa HOM05D003167 ORTHO05D003929 4.2e-45 185.7 126 67.5
HPP92_017793 Vanilla planifolia HOM05D003167 ORTHO05D003929 4.2e-45 185.7 107 75.7
FAN28G1035 Fragaria x ananassa HOM05D003167 ORTHO05D003929 5.5e-45 185.3 201 49.3
AUR62007183 Chenopodium quinoa HOM05D003167 ORTHO05D003929 7.1e-45 184.9 126 66.7
AUR62007182 Chenopodium quinoa HOM05D003167 ORTHO05D003929 1.2e-44 184.1 126 66.7
Cc04_g07780 Coffea canephora HOM05D003167 ORTHO05D003929 1.6e-44 183.7 119 68.9
Aqoxy3G01613 Aquilegia oxysepala HOM05D003167 ORTHO05D000007 2.5e-42 176.4 133 63.2
Aqoxy3G01485 Aquilegia oxysepala HOM05D003167 ORTHO05D003929 3.3e-42 176.0 134 61.9
Lj1P1240T21 Lonicera japonica HOM05D003167 ORTHO05D003929 3.3e-42 176.0 126 61.9
AUR62022073 Chenopodium quinoa HOM05D003167 ORTHO05D003929 5.7e-42 175.3 125 62.4
AUR62022074 Chenopodium quinoa HOM05D003167 ORTHO05D003929 5.7e-42 175.3 125 62.4
Cfa022090 Carpinus fangiana HOM05D003167 ORTHO05D003929 1.2e-39 167.5 132 56.8
FAN19G0600 Fragaria x ananassa HOM05D003167 ORTHO05D003929 2.6e-39 166.4 111 67.6
MD12G1102100 Malus domestica HOM05D003167 ORTHO05D003929 7.6e-39 164.9 105 69.5
EL10Ac3g06890 Beta vulgaris HOM05D003167 ORTHO05D003929 2.9e-38 162.9 110 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2239 Anthoceros agrestis HOM05D003167 ORTHO05D003929 2.5e-37 159.8 183 49.2
PRCOL_00002534 Prasinoderma coloniale HOM05D003167 ORTHO05D003929 2.5e-37 159.8 127 57.5
Rhsim03G0085500 Rhododendron simsii HOM05D003167 ORTHO05D003929 3.6e-36 156.0 90 76.7
Glyma.13G148300 Glycine max HOM05D003167 ORTHO05D003929 1.8e-35 153.7 193 47.7
CBR_g4119 Chara braunii HOM05D003167 ORTHO05D003929 1.3e-33 147.5 174 48.3
Eucgr.D02277 Eucalyptus grandis HOM05D003167 ORTHO05D003929 1.1e-32 144.4 125 58.4
QL10p008780 Quercus lobata HOM05D003167 ORTHO05D033269 4.5e-31 139.0 228 46.1
Os04g0558200 Oryza sativa ssp. japonica HOM05D003167 ORTHO05D003929 4.2e-29 132.5 92 62.0
unitig_578.g16659 Utricularia gibba HOM05D003167 ORTHO05D003929 7.2e-29 131.7 168 47.6
CAN.G1459.3 Capsicum annuum HOM05D003167 ORTHO05D003929 1.5e-26 124.0 107 54.2
FAN23G2272 Fragaria x ananassa HOM05D003167 ORTHO05D003929 7.4e-26 121.7 121 50.4
Actinidia26630 Actinidia chinensis HOM05D003167 ORTHO05D003929 5.3e-24 115.5 149 47.0
BcaNung00709 Brassica carinata HOM05D003167 ORTHO05D003929 2.0e-23 113.6 79 63.3
Hma1.2p1_2596F.1_g325110 Hydrangea macrophylla HOM05D003167 ORTHO05D003929 7.7e-23 111.7 70 70.0
Nitab4.5_0007768g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 6.1e-20 102.1 61 72.1
Nitab4.5_0000883g0040 Nicotiana tabacum HOM05D003167 ORTHO05D003929 2.0e-18 97.1 67 65.7
Rhsim10G0051300 Rhododendron simsii HOM05D000001 ORTHO05D009071 1.3e-14 84.3 58 60.3
C07p61860 Brassica napus HOM05D003167 ORTHO05D033269 9.4e-13 78.2 47 70.2


User provided reference genes

Program Settings