Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 0.0e+00 1295.4 650 100.0
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 4.9e-301 1037.3 647 80.2
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 5.0e-298 1027.3 676 77.5
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 1.1e-284 983.0 651 75.3
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 5.1e-282 974.2 648 73.9
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.3e-281 971.5 649 74.6
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 1.3e-277 959.5 652 73.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 3.3e-273 944.9 651 72.0
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 1.4e-271 939.5 649 72.7
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.8e-271 939.1 650 71.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 2.6e-270 935.3 649 70.0
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.6e-270 935.3 653 71.8
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 4.9e-269 931.0 651 70.8
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 1.9e-268 929.1 651 70.5
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 7.8e-267 923.7 649 70.6
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.0e-262 909.1 651 69.3
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.0e-262 909.1 648 68.2
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 9.9e-262 906.7 652 69.3
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.3e-261 906.4 653 69.7
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.2e-261 905.6 650 70.6
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 4.9e-261 904.4 653 69.2
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.1e-260 903.3 652 69.3
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 1.4e-260 902.9 649 69.6
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.6e-259 899.4 654 68.5
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 7.4e-257 890.6 648 68.2
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 9.6e-257 890.2 653 68.0
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 1.1e-255 886.7 649 68.4
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 1.5e-254 882.9 648 68.2
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 9.9e-254 880.2 649 68.3
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.3e-253 879.8 651 66.8
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 1.7e-253 879.4 650 67.8
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 4.9e-253 877.9 649 67.6
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 8.4e-253 877.1 649 67.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 8.4e-253 877.1 537 80.1
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.9e-252 875.9 651 66.8
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 3.2e-252 875.2 649 66.7
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 5.5e-252 874.4 651 67.4
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 9.3e-252 873.6 649 67.6
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 9.3e-252 873.6 647 68.8
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.6e-251 872.8 647 66.9
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 1.6e-251 872.8 647 66.9
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 6.0e-251 870.9 651 66.7
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 7.9e-251 870.5 650 66.6
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 1.8e-250 869.4 621 70.4
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 6.7e-250 867.5 651 66.4
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 1.1e-249 866.7 657 67.4
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 1.5e-249 866.3 652 64.6
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 4.3e-249 864.8 651 65.9
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 2.1e-248 862.4 651 65.4
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 6.2e-248 860.9 659 67.2
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 1.1e-247 860.1 654 65.7
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.4e-247 859.8 661 65.4
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 2.0e-246 855.9 651 66.1
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 5.8e-246 854.4 662 65.3
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.3e-245 853.2 649 66.1
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.7e-245 852.8 654 64.7
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 4.9e-245 851.3 648 66.4
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 5.5e-244 847.8 653 62.9
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 4.6e-243 844.7 651 64.5
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 8.7e-242 840.5 631 66.9
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 8.7e-242 840.5 621 68.3
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.5e-241 839.0 653 64.8
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 2.5e-241 839.0 653 64.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.6e-240 836.3 656 63.9
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 4.8e-240 834.7 654 63.8
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 4.1e-239 831.6 654 64.1
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.2e-238 830.1 647 64.9
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 1.5e-238 829.7 658 63.4
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 4.5e-238 828.2 652 64.0
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 2.2e-237 825.9 652 63.7
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 1.9e-236 822.8 652 64.0
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 7.2e-236 820.8 653 62.8
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 2.7e-235 818.9 653 62.2
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 8.8e-234 813.9 658 61.7
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 6.3e-232 807.7 656 62.0
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 1.4e-231 806.6 613 65.6
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 2.4e-231 805.8 658 61.6
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 3.1e-231 805.4 648 62.8
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 1.2e-230 803.5 659 61.9
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 2.0e-225 786.2 672 60.4
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 2.5e-220 769.2 653 59.3
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.4e-218 763.5 651 57.3
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 4.1e-215 751.9 656 58.5
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.6e-206 723.4 649 57.5
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.6e-203 712.2 573 63.0
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 3.5e-198 695.7 648 55.2
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.7e-189 666.8 592 55.7
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 2.9e-189 666.0 489 69.3
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.4e-186 657.1 512 64.6
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.7e-184 650.2 624 58.8
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.7e-184 650.2 581 59.6
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 6.0e-182 641.7 681 51.5
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 5.1e-165 585.5 662 48.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.6e-161 573.2 595 54.3
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 6.4e-160 568.5 476 61.8
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 7.6e-145 518.5 651 43.8
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.9e-134 481.9 645 43.3
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.4e-132 475.3 550 50.0
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 9.0e-130 468.4 632 43.7
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 9.3e-127 458.4 253 85.0
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 7.2e-111 405.6 390 50.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 4.5e-105 386.3 358 56.4
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 7.7e-97 359.0 297 63.0
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 8.5e-96 355.5 484 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 1.0e-93 348.6 630 37.5
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 3.0e-93 347.1 501 41.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 1.2e-92 345.1 423 44.9
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 7.5e-92 342.4 177 87.0
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.5e-79 301.6 196 72.4
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 1.0e-69 268.9 273 50.2
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 1.9e-55 221.5 170 65.3
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 4.7e-54 216.9 103 94.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 3.1e-53 214.2 105 88.6
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 6.4e-51 206.5 223 48.9
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 5.3e-37 160.2 494 29.8
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 4.9e-35 153.7 137 60.6
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 6.4e-35 153.3 155 55.5
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.1e-34 152.5 186 44.6
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.9e-34 151.8 199 40.7
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 9.9e-28 129.4 84 72.6
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 1.1e-26 125.9 86 69.8
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 1.4e-26 125.6 58 91.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.5e-23 114.8 83 63.9
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 5.3e-21 107.1 102 51.0
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 1.4e-18 99.0 72 63.9
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 3.0e-16 91.3 76 60.5
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 6.7e-16 90.1 74 60.8
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 3.3e-15 87.8 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 2.1e-14 85.1 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 4.5e-12 77.4 205 30.7
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 5.0e-11 73.9 93 45.2
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 2.1e-09 68.6 149 38.3
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 3.5e-09 67.8 111 42.3
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 3.0e-08 64.7 97 42.3


User provided reference genes

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