Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005425 Quercus lobata HOM05D007025 ORTHO05D008862 5.6e-46 187.2 90 100.0
QL06p002232 Quercus lobata HOM05D007025 ORTHO05D008862 1.2e-40 169.5 85 95.3
CiPaw.14G069900 Carya illinoinensis HOM05D007025 ORTHO05D008862 7.5e-35 150.2 87 80.5
CiPaw.09G091100 Carya illinoinensis HOM05D007025 ORTHO05D008862 9.8e-35 149.8 80 87.5
CiPaw.13G095900 Carya illinoinensis HOM05D007025 ORTHO05D008862 9.8e-35 149.8 84 83.3
CSS0049041 Camellia sinensis var. sinensis HOM05D007025 ORTHO05D008862 5.4e-33 144.1 80 82.5
Ciclev10003169m.g Citrus clementina HOM05D007025 ORTHO05D008862 3.9e-31 137.9 88 71.6
Haze_24077 Corylus avellana HOM05D007025 ORTHO05D008862 6.6e-31 137.1 84 77.4
CsaV3_6G031770 Cucumis sativus L. HOM05D007025 ORTHO05D008862 8.6e-31 136.7 80 73.8
PGR102G0249 Punica granatum HOM05D007025 ORTHO05D008862 8.6e-31 136.7 80 77.5
Sed0024062 Sechium edule HOM05D007025 ORTHO05D008862 8.6e-31 136.7 80 73.8
Manes.04G033800 Manihot esculenta HOM05D007025 ORTHO05D008862 1.5e-30 136.0 80 76.2
GSVIVG01024988001 Vitis vinifera HOM05D007025 ORTHO05D008862 2.5e-30 135.2 80 75.0
FvH4_3g35770 Fragaria vesca HOM05D007025 ORTHO05D008862 4.3e-30 134.4 80 80.0
FAN11G3513 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.3e-30 134.4 80 80.0
FAN16G3493 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.3e-30 134.4 80 80.0
FAN25G2181 Fragaria x ananassa HOM05D007025 ORTHO05D008862 4.3e-30 134.4 80 80.0
Cfa003375 Carpinus fangiana HOM05D007025 ORTHO05D008862 5.6e-30 134.0 80 78.8
FAN21G1635 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.6e-30 134.0 80 80.0
Eucgr.J02059 Eucalyptus grandis HOM05D007025 ORTHO05D008862 9.5e-30 133.3 80 76.2
Thecc.09G323800 Theobroma cacao HOM05D007025 ORTHO05D008862 1.6e-29 132.5 80 73.8
ClCG08G009640 Citrullus lanatus HOM05D007025 ORTHO05D008862 2.1e-29 132.1 80 71.2
Prupe.6G079900 Prunus persica HOM05D007025 ORTHO05D008862 2.1e-29 132.1 80 73.8
MELO3C026555.2 Cucumis melo HOM05D007025 ORTHO05D008862 2.8e-29 131.7 80 72.5
CANSAT54G1063 Cannabis sativa HOM05D007025 ORTHO05D008862 3.6e-29 131.3 80 76.2
Nn5g26960 Nelumbo nucifera HOM05D007025 ORTHO05D008862 3.6e-29 131.3 81 77.8
Gohir.A03G041000 Gossypium hirsutum HOM05D007025 ORTHO05D008862 4.7e-29 131.0 80 73.8
RcHm_v2.0_Chr5g0006711 Rosa chinensis HOM05D007025 ORTHO05D008862 4.7e-29 131.0 80 77.5
RcHm_v2.0_Chr5g0063941 Rosa chinensis HOM05D007025 ORTHO05D008862 4.7e-29 131.0 80 77.5
Hma1.2p1_1888F.1_g306550 Hydrangea macrophylla HOM05D007025 ORTHO05D008862 6.2e-29 130.6 80 75.0
Gohir.D03G127100 Gossypium hirsutum HOM05D007025 ORTHO05D008862 8.1e-29 130.2 80 73.8
Gorai.003G133500 Gossypium raimondii HOM05D007025 ORTHO05D008862 8.1e-29 130.2 80 73.8
Duzib168G1407 Durio zibethinus HOM05D007025 ORTHO05D008862 1.1e-28 129.8 80 75.0
TWI79G0521 Tripterygium wilfordii HOM05D007025 ORTHO05D008862 1.1e-28 129.8 80 71.2
TAR374G1462 Trochodendron aralioides HOM05D007025 ORTHO05D008862 1.1e-28 129.8 84 69.0
vmacro00530 Vaccinium macrocarpon HOM05D007025 ORTHO05D008862 1.1e-28 129.8 80 75.0
Rhsim09G0044100 Rhododendron simsii HOM05D007025 ORTHO05D008862 1.8e-28 129.0 80 72.5
SGA_v2.0_scaffold118G32439 Striga asiatica HOM05D007025 ORTHO05D008862 1.2e-27 126.3 83 71.1
Aqoxy1G00724 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 2.6e-27 125.2 80 71.2
arahy.Tifrunner.gnm1.ann1.UND1EB Arachis hypogaea HOM05D007025 ORTHO05D008862 2.6e-27 125.2 80 70.0
Atru.chr3.3859 Acer truncatum HOM05D007025 ORTHO05D008862 3.4e-27 124.8 80 70.0
Nitab4.5_0004078g0030 Nicotiana tabacum HOM05D007025 ORTHO05D008862 3.4e-27 124.8 80 70.0
THA.LOC104810785 Tarenaya hassleriana HOM05D007025 ORTHO05D008862 3.4e-27 124.8 80 68.8
Nitab4.5_0001800g0060 Nicotiana tabacum HOM05D007025 ORTHO05D008862 4.4e-27 124.4 80 70.0
arahy.Tifrunner.gnm1.ann1.XVFR0N Arachis hypogaea HOM05D007025 ORTHO05D008862 5.8e-27 124.0 80 68.8
unitig_749.g14331 Utricularia gibba HOM05D007025 ORTHO05D008862 7.5e-27 123.6 80 67.5
Phvul.002G188200 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 9.9e-27 123.2 80 70.0
Aqoxy7G01971 Aquilegia oxysepala HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 70.0
AL1G53430 Arabidopsis lyrata HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 67.5
AT1G47278 Arabidopsis thaliana HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 67.5
COL.COLO4_20470 Corchorus olitorius HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 68.8
Solyc11g066070.2 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 68.8
Sopen11g025810 Solanum pennellii HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 68.8
PGSC0003DMG400000442 Solanum tuberosum HOM05D007025 ORTHO05D008862 1.3e-26 122.9 80 68.8
Carub.0001s3607 Capsella rubella HOM05D007025 ORTHO05D008862 1.7e-26 122.5 80 67.5
Peaxi162Scf00406g00059 Petunia axillaris HOM05D007025 ORTHO05D008862 1.7e-26 122.5 80 67.5
Solyc06g076010.3 Solanum lycopersicum HOM05D007025 ORTHO05D008862 1.7e-26 122.5 80 70.0
Sopen06g032420 Solanum pennellii HOM05D007025 ORTHO05D008862 1.7e-26 122.5 80 70.0
Cpa.g.sc840.2 Carica papaya HOM05D007025 ORTHO05D008862 2.9e-26 121.7 80 67.5
CAN.G764.4 Capsicum annuum HOM05D007025 ORTHO05D008862 4.9e-26 120.9 80 67.5
Migut.C01196 Erythranthe guttata HOM05D007025 ORTHO05D008862 4.9e-26 120.9 80 71.2
Cc01_g12710 Coffea canephora HOM05D007025 ORTHO05D008862 6.4e-26 120.6 80 68.8
Hund04979 Selenicereus undatus HOM05D007025 ORTHO05D008862 6.4e-26 120.6 80 70.0
ATR0800G159 Amborella trichopoda HOM05D007025 ORTHO05D008862 8.3e-26 120.2 79 69.6
PSO384G2653 Papaver somniferum HOM05D007025 ORTHO05D008862 8.3e-26 120.2 83 65.1
Lj1g0011371 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-25 119.8 80 68.8
Lj4g0013158 Lotus japonicus HOM05D007025 ORTHO05D008862 1.1e-25 119.8 80 68.8
Aa31sc152G30 Aethionema arabicum HOM05D007025 ORTHO05D008862 1.4e-25 119.4 80 67.5
Lsat_1_v5_gn_2_83821 Lactuca sativa HOM05D007025 ORTHO05D008862 1.4e-25 119.4 80 65.0
Phvul.007G101100 Phaseolus vulgaris HOM05D007025 ORTHO05D008862 1.4e-25 119.4 80 68.8
Lsat_1_v5_gn_5_79400 Lactuca sativa HOM05D007025 ORTHO05D008862 1.9e-25 119.0 80 65.0
EL10Ac7g15997 Beta vulgaris HOM05D007025 ORTHO05D008862 2.4e-25 118.6 80 67.5
CARHR036850 Cardamine hirsuta HOM05D007025 ORTHO05D008862 4.1e-25 117.9 81 69.1
Glyma.05G134100 Glycine max HOM05D007025 ORTHO05D008862 5.4e-25 117.5 80 65.0
Medtr4g094750 Medicago truncatula HOM05D007025 ORTHO05D008862 7.1e-25 117.1 80 65.0
Psat7g087480 Pisum sativum HOM05D007025 ORTHO05D008862 7.1e-25 117.1 80 65.0
Lalb_Chr12g0209181 Lupinus albus HOM05D007025 ORTHO05D008862 9.2e-25 116.7 80 67.5
Glyma.08G088800 Glycine max HOM05D007025 ORTHO05D008862 1.6e-24 115.9 80 63.8
Thhalv10011908m.g Eutrema salsugineum HOM05D007025 ORTHO05D008862 2.7e-24 115.2 80 66.2
BcaC07g37223 Brassica carinata HOM05D007025 ORTHO05D008862 4.6e-24 114.4 80 66.2
A08p05760 Brassica napus HOM05D007025 ORTHO05D008862 4.6e-24 114.4 80 66.2
C08p06430 Brassica napus HOM05D007025 ORTHO05D008862 4.6e-24 114.4 80 66.2
BraA08t32579Z Brassica rapa HOM05D007025 ORTHO05D008862 4.6e-24 114.4 80 66.2
Lalb_Chr12g0209151 Lupinus albus HOM05D007025 ORTHO05D008862 1.0e-23 113.2 80 66.2
BcaB04g17532 Brassica carinata HOM05D007025 ORTHO05D008862 1.3e-23 112.8 80 65.0
Sp1g34420 Schrenkiella parvula HOM05D007025 ORTHO05D008862 1.3e-23 112.8 80 65.0
CDE11G0504 Ceratophyllum demersum HOM05D007025 ORTHO05D008862 1.9e-22 109.0 80 62.5
ECA238G2407 Erigeron canadensis HOM05D007025 ORTHO05D008862 5.6e-22 107.5 80 57.5
SalBow5G5439 Salvia bowleyana HOM05D007025 ORTHO05D008862 8.1e-21 103.6 76 63.2
Os03g0276700 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 1.4e-20 102.8 79 59.5
Os08g0422300 Oryza sativa ssp. japonica HOM05D007025 ORTHO05D008862 4.0e-20 101.3 79 59.5
TPR.G23830 Trifolium pratense HOM05D007025 ORTHO05D008862 5.2e-20 100.9 79 58.2
MBI05_g06554_MAGBIO Magnolia biondii HOM05D007025 ORTHO05D008862 1.3e-18 96.3 72 56.9
SHI05954 Sapria himalayana HOM05D007025 ORTHO05D008862 1.3e-18 96.3 78 51.3
PGSC0003DMG400030317 Solanum tuberosum HOM05D007025 ORTHO05D008862 4.2e-17 91.3 57 68.4
FAN24G0628 Fragaria x ananassa HOM05D007025 ORTHO05D008862 5.4e-17 90.9 64 68.8
Lj1A680T12 Lonicera japonica HOM05D007025 ORTHO05D008862 9.2e-17 90.1 58 69.0
unitig_26.g9279 Utricularia gibba HOM05D007025 ORTHO05D008862 9.2e-17 90.1 59 66.1
Potri.009G029400 Populus trichocarpa HOM05D007025 ORTHO05D008862 4.6e-16 87.8 80 48.8
MD11G1111500 Malus domestica HOM05D007025 ORTHO05D008862 3.0e-15 85.1 58 69.0
BolC8t47490H Brassica oleracea HOM05D007025 ORTHO05D008862 1.1e-14 83.2 71 52.1
MD02G1271300 Malus domestica HOM05D007025 ORTHO05D008862 1.1e-14 83.2 58 67.2
HanXRQChr14g0439311 Helianthus annuus HOM05D007025 ORTHO05D008862 3.3e-14 81.6 78 47.4
Mapoly0032s0020 Marchantia polymorpha HOM05D007025 ORTHO05D008862 3.6e-13 78.2 80 48.8
MD02G1271100 Malus domestica HOM05D007025 ORTHO05D008862 1.5e-11 72.8 65 55.4
Pp3c21_6850 Physcomitrium patens HOM05D007025 ORTHO05D008862 1.5e-11 72.8 80 45.0
COL.COLO4_18491 Corchorus olitorius HOM05D007025 ORTHO05D008862 9.9e-11 70.1 76 50.0
AagrBONN_evm.TU.Sc2ySwM_344.5329 Anthoceros agrestis HOM05D007025 ORTHO05D008862 3.8e-10 68.2 77 45.5
SGA_v2.0_scaffold24G10508 Striga asiatica HOM05D007025 ORTHO05D008862 1.4e-09 66.2 41 70.7
AUR62001808 Chenopodium quinoa HOM05D002150 ORTHO05D002191 1.9e-09 65.9 43 65.1
AUR62009594 Chenopodium quinoa HOM05D007025 ORTHO05D002191 1.9e-09 65.9 43 65.1
SEGI_34612 Sequoiadendron giganteum HOM05D007025 ORTHO05D008862 1.9e-09 65.9 45 60.0
FvH4_2g11050 Fragaria vesca HOM05D007025 ORTHO05D008862 3.2e-09 65.1 43 65.1


User provided reference genes

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