Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1974.9 1017 100.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1640.6 1018 81.9
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1603.2 1018 80.4
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1445.3 1016 73.4
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1442.6 1017 72.7
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1433.3 1017 71.6
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1427.9 1020 72.5
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 0.0e+00 1420.2 900 79.6
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1409.4 1018 70.4
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1409.0 1018 70.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1407.9 1018 70.4
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1395.9 992 72.0
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1395.2 1016 70.9
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1394.4 1056 67.9
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1394.0 1022 70.9
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1377.5 1017 69.3
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1374.4 1023 68.8
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1373.6 1026 70.5
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1372.5 1021 68.9
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1369.4 1026 70.4
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1358.6 1024 70.1
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1358.2 1009 68.8
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1356.7 1018 68.8
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1356.3 1023 67.9
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1353.2 1020 70.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1343.2 1024 67.0
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1336.2 1021 66.1
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1331.6 1021 66.0
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1330.5 1021 66.2
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1323.1 1016 67.8
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1315.1 1007 67.1
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1298.5 1010 67.3
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 0.0e+00 1287.7 996 66.9
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1286.9 1016 66.4
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1285.8 1011 66.6
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1284.2 1009 65.1
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1283.9 1023 65.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1276.2 1022 64.9
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1272.3 1019 64.4
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1270.4 1011 64.9
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1264.2 1019 65.1
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1262.7 1009 65.1
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 0.0e+00 1261.1 1013 65.4
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1260.7 1043 64.1
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1256.5 1070 62.3
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 0.0e+00 1230.3 1049 62.4
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1228.0 1038 63.1
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1224.5 1015 62.9
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1222.2 1005 61.8
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1213.4 1003 61.8
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1206.8 1015 61.6
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 0.0e+00 1204.1 1024 61.4
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1201.8 1017 62.5
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1198.0 1013 61.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1194.9 1014 61.0
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 0.0e+00 1194.5 1026 60.5
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1194.5 1016 60.1
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1018 61.0
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1187.6 1015 60.1
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 0.0e+00 1186.4 1026 60.3
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 0.0e+00 1185.6 1021 60.1
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 0.0e+00 1184.5 1027 60.2
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1181.0 1016 59.4
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1180.6 1020 59.1
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 0.0e+00 1178.7 1026 60.2
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1176.4 1017 59.1
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 0.0e+00 1157.9 1028 59.4
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1156.7 1016 59.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1155.2 1008 59.9
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1152.1 1021 60.1
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1149.4 1006 59.9
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1021 60.0
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 0.0e+00 1142.1 1027 59.5
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 0.0e+00 1138.3 1018 59.3
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 0.0e+00 1137.9 1024 58.9
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 844 70.3
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 0.0e+00 1126.3 1041 58.7
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1123.2 1046 55.7
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 0.0e+00 1115.5 903 64.0
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1102.8 1019 58.1
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1090.5 952 59.1
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 0.0e+00 1083.2 1034 56.7
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1078.2 1008 56.9
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 2.1e-311 1072.4 1014 56.7
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 3.5e-311 1071.6 975 58.2
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.2e-309 1066.6 1024 55.1
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 3.4e-309 1065.1 1023 56.5
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 6.5e-292 1007.7 1027 53.7
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.2e-285 986.9 1008 51.7
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 7.9e-282 974.2 1026 53.4
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.8e-281 973.0 999 51.6
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.2e-277 960.3 773 64.9
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.2e-277 960.3 739 67.3
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 4.0e-217 759.2 686 60.1
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.1e-203 714.5 645 57.8
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.5e-203 714.1 591 61.3
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.3e-203 712.6 645 57.8
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.6e-194 684.1 619 60.3
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 2.7e-189 666.8 551 67.3
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.7e-167 594.3 1087 35.9
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.0e-156 558.5 526 58.7
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 1.4e-153 548.1 1088 35.4
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.0e-140 503.8 346 73.1
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 6.5e-135 486.1 958 35.0
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 4.0e-108 397.1 394 51.8
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 1.9e-105 388.3 443 47.6
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 2.1e-101 374.8 331 62.2
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.4e-100 372.1 1147 28.2
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 4.3e-94 350.5 1158 27.7
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.6e-88 332.0 372 49.7
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.1e-76 292.7 262 60.3
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 3.4e-67 261.2 556 36.7
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 3.3e-62 244.6 222 60.4
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.4e-52 211.8 146 73.3
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 1.4e-49 202.6 227 52.9
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 6.1e-48 197.2 149 72.5
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 1.1e-44 186.4 176 64.8
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.6e-38 165.2 147 53.1
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 6.5e-34 150.6 220 40.9
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.5e-27 127.9 103 63.1
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 7.7e-27 127.1 438 29.5
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 3.2e-25 121.7 146 43.8
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.4e-23 116.3 86 59.3
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 2.2e-21 109.0 221 37.1
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 8.3e-21 107.1 77 61.0
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 1.2e-19 103.2 131 44.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 3.5e-19 101.7 72 62.5
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.7e-18 99.4 142 40.8
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 7.2e-17 94.0 64 71.9
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.6e-16 91.7 102 52.0
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-15 89.0 66 63.6
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.3e-15 89.0 66 63.6
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 7.5e-14 84.0 64 67.2
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.8e-13 82.0 97 45.4
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.8e-13 82.0 145 39.3
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.2e-11 76.6 235 31.5
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 5.0e-10 71.2 37 83.8
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.0e-07 63.5 973 20.6
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 2.3e-07 62.4 52 61.5
MD06G1154000 Malus domestica HOM05D005223 ORTHO05D006449 5.2e-07 61.2 47 53.2
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 6.8e-07 60.8 34 79.4


User provided reference genes

Program Settings