Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p004811 Quercus lobata HOM05D007996 ORTHO05D009821 1.6e-29 132.1 68 100.0
CiPaw.12G036300 Carya illinoinensis HOM05D007996 ORTHO05D009821 9.1e-25 116.3 67 91.0
Haze_07260 Corylus avellana HOM05D007996 ORTHO05D009821 1.6e-16 89.0 68 73.5
Thecc.03G124100 Theobroma cacao HOM05D007996 ORTHO05D009821 5.9e-16 87.0 73 71.2
Atru.chr9.1020 Acer truncatum HOM05D007996 ORTHO05D009821 1.3e-15 85.9 68 73.5
Lj4g0006448 Lotus japonicus HOM05D007996 ORTHO05D009821 5.0e-15 84.0 69 72.5
Manes.14G054700 Manihot esculenta HOM05D007996 ORTHO05D009821 6.5e-15 83.6 66 69.7
TWI14G0037 Tripterygium wilfordii HOM05D007996 ORTHO05D009821 1.9e-14 82.0 67 68.7
CiPaw.11G011200 Carya illinoinensis HOM05D007996 ORTHO05D009821 4.2e-14 80.9 67 70.1
Potri.012G094000 Populus trichocarpa HOM05D007996 ORTHO05D009821 4.2e-14 80.9 69 68.1
Manes.06G116300 Manihot esculenta HOM05D007996 ORTHO05D009821 5.5e-14 80.5 46 84.8
Cpa.g.sc4.79 Carica papaya HOM05D007996 ORTHO05D009821 7.2e-14 80.1 44 88.6
EL10Ac7g18091 Beta vulgaris HOM05D007996 ORTHO05D009821 1.2e-13 79.3 72 66.7
AUR62001291 Chenopodium quinoa HOM05D007996 ORTHO05D009821 1.2e-13 79.3 66 69.7
Solyc06g071930.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 2.1e-13 78.6 68 70.6
Sopen06g028210 Solanum pennellii HOM05D007996 ORTHO05D009821 2.1e-13 78.6 68 70.6
PGSC0003DMG400027111 Solanum tuberosum HOM05D007996 ORTHO05D009821 2.1e-13 78.6 68 70.6
Gohir.A12G188200 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.7e-13 78.2 76 67.1
Gohir.D12G191000 Gossypium hirsutum HOM05D007996 ORTHO05D009821 2.7e-13 78.2 76 67.1
Gorai.008G204900 Gossypium raimondii HOM05D007996 ORTHO05D009821 2.7e-13 78.2 76 67.1
Duzib084G1431 Durio zibethinus HOM05D007996 ORTHO05D009821 3.6e-13 77.8 75 65.3
Lalb_Chr07g0183251 Lupinus albus HOM05D007996 ORTHO05D009821 4.7e-13 77.4 68 66.2
Glyma.17G127600 Glycine max HOM05D007996 ORTHO05D009821 6.1e-13 77.0 68 67.6
Medtr4g103970 Medicago truncatula HOM05D007996 ORTHO05D009821 6.1e-13 77.0 68 67.6
Phvul.003G208700 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 6.1e-13 77.0 68 67.6
CAN.G1046.7 Capsicum annuum HOM05D007996 ORTHO05D009821 1.0e-12 76.3 68 69.1
Potri.015G091300 Populus trichocarpa HOM05D007996 ORTHO05D009821 1.4e-12 75.9 72 59.7
SalBow5G2505 Salvia bowleyana HOM05D007996 ORTHO05D009821 2.3e-12 75.1 67 64.2
SalBow5G3809 Salvia bowleyana HOM05D007996 ORTHO05D009821 2.3e-12 75.1 67 64.2
Prupe.5G156000 Prunus persica HOM05D007996 ORTHO05D009821 4.0e-12 74.3 71 63.4
Glyma.05G045400 Glycine max HOM05D007996 ORTHO05D009821 5.2e-12 73.9 68 67.6
Lalb_Chr08g0236981 Lupinus albus HOM05D007996 ORTHO05D009821 8.8e-12 73.2 67 62.7
Psat4g063440 Pisum sativum HOM05D007996 ORTHO05D009821 8.8e-12 73.2 67 67.2
CSS0022418 Camellia sinensis var. sinensis HOM05D007996 ORTHO05D009821 2.0e-11 72.0 68 60.3
TPR.G40415 Trifolium pratense HOM05D007996 ORTHO05D009821 2.6e-11 71.6 68 63.2
Hma1.2p1_0014F.1_g009860 Hydrangea macrophylla HOM05D007996 ORTHO05D009821 4.4e-11 70.9 78 57.7
AUR62025676 Chenopodium quinoa HOM05D007996 ORTHO05D009821 7.5e-11 70.1 66 65.2
Nn4g22432 Nelumbo nucifera HOM05D007996 ORTHO05D009821 9.8e-11 69.7 75 61.3
ClCG03G003560 Citrullus lanatus HOM05D007996 ORTHO05D009821 1.3e-10 69.3 67 62.7
vmacro19229 Vaccinium macrocarpon HOM05D007996 ORTHO05D009821 2.2e-10 68.6 70 61.4
Sed0027846 Sechium edule HOM05D007996 ORTHO05D009821 4.8e-10 67.4 67 59.7
Actinidia25607 Actinidia chinensis HOM05D007996 ORTHO05D009821 6.3e-10 67.0 66 63.6
FAN04G1274 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.1e-09 66.2 66 60.6
FAN13G1950 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.1e-09 66.2 66 60.6
Sed0008862 Sechium edule HOM05D007996 ORTHO05D009821 1.1e-09 66.2 67 58.2
FAN08G0192 Fragaria x ananassa HOM05D007996 ORTHO05D009821 1.8e-09 65.5 66 62.1
Nn3g16560 Nelumbo nucifera HOM05D007996 ORTHO05D009821 1.8e-09 65.5 44 75.0
RcHm_v2.0_Chr7g0190871 Rosa chinensis HOM05D007996 ORTHO05D009821 2.4e-09 65.1 67 61.2
Glyma.04G193300 Glycine max HOM05D007996 ORTHO05D009821 3.1e-09 64.7 61 62.3
FAN18G2201 Fragaria x ananassa HOM05D007996 ORTHO05D009821 4.1e-09 64.3 66 60.6
Phvul.009G168600 Phaseolus vulgaris HOM05D007996 ORTHO05D009821 5.4e-09 63.9 65 61.5
Aqoxy5G03550 Aquilegia oxysepala HOM05D007996 ORTHO05D009821 9.1e-09 63.2 70 64.3
COL.COLO4_16835 Corchorus olitorius HOM05D007996 ORTHO05D009821 9.1e-09 63.2 73 61.6
PGR044G0405 Punica granatum HOM05D007996 ORTHO05D009821 9.1e-09 63.2 64 60.9
DCAR_007470 Daucus carota HOM05D007996 ORTHO05D009821 1.2e-08 62.8 80 56.2
Rhsim08G0186300 Rhododendron simsii HOM05D007996 ORTHO05D009821 1.6e-08 62.4 33 93.9
MBI06_g40149_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 2.0e-08 62.0 57 66.7
CsaV3_1G009400 Cucumis sativus L. HOM05D007996 ORTHO05D009821 2.7e-08 61.6 70 58.6
Nitab4.5_0005327g0040 Nicotiana tabacum HOM05D007996 ORTHO05D009821 2.7e-08 61.6 63 61.9
Peaxi162Scf00089g00319 Petunia axillaris HOM05D007996 ORTHO05D009821 2.7e-08 61.6 60 66.7
Actinidia16189 Actinidia chinensis HOM05D007996 ORTHO05D009821 3.5e-08 61.2 38 84.2
MELO3C002341.2 Cucumis melo HOM05D007996 ORTHO05D009821 3.5e-08 61.2 73 57.5
Lj1g0020512 Lotus japonicus HOM05D007996 ORTHO05D009821 3.5e-08 61.2 68 57.4
TWI39G0948 Tripterygium wilfordii HOM05D000063 ORTHO05D008721 5.9e-08 60.5 58 60.3
TAR629G0997 Trochodendron aralioides HOM05D007996 ORTHO05D009821 7.7e-08 60.1 68 57.4
MBI11_g42682_MAGBIO Magnolia biondii HOM05D007996 ORTHO05D009821 1.0e-07 59.7 39 74.4
Solyc03g110990.1 Solanum lycopersicum HOM05D007996 ORTHO05D009821 1.7e-07 58.9 63 58.7
Oeu045473.1 Olea europaea HOM05D007996 ORTHO05D009821 3.8e-07 57.8 70 60.0
Lsat_1_v5_gn_1_29541 Lactuca sativa HOM05D007996 ORTHO05D009821 5.0e-07 57.4 75 50.7
Carub.0008s1039 Capsella rubella HOM05D013032 ORTHO05D009821 8.6e-07 56.6 69 50.7
THA.LOC109116227 Tarenaya hassleriana HOM05D007996 ORTHO05D009821 8.6e-07 56.6 61 54.1
CARHR258170 Cardamine hirsuta HOM05D013032 ORTHO05D009821 1.1e-06 56.2 67 47.8
Migut.I00487 Erythranthe guttata HOM05D007996 ORTHO05D009821 1.1e-06 56.2 68 50.0
Sp6g12420 Schrenkiella parvula HOM05D013032 ORTHO05D009821 1.5e-06 55.8 68 47.1
Cc04_g10190 Coffea canephora HOM05D007996 ORTHO05D009821 1.9e-06 55.5 42 71.4
AT5G50335 Arabidopsis thaliana HOM05D013032 ORTHO05D009821 3.3e-06 54.7 68 48.5
CAN.G352.51 Capsicum annuum HOM05D007996 ORTHO05D009821 3.3e-06 54.7 67 55.2
AL8G24410 Arabidopsis lyrata HOM05D013032 ORTHO05D009821 5.5e-06 53.9 68 45.6
BcaB08g35412 Brassica carinata HOM05D013032 ORTHO05D009821 5.5e-06 53.9 68 47.1
Oeu037569.1 Olea europaea HOM05D007996 ORTHO05D009821 7.2e-06 53.5 67 58.2


User provided reference genes

Program Settings