Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 0.0e+00 1494.9 775 100.0
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 0.0e+00 1275.0 774 85.7
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 0.0e+00 1270.4 774 85.4
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 0.0e+00 1265.8 775 84.6
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 0.0e+00 1191.0 766 79.6
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1171.8 773 78.4
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 0.0e+00 1166.8 773 77.5
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1163.3 774 77.1
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 0.0e+00 1162.9 773 77.5
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 0.0e+00 1162.5 775 76.8
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1162.5 775 77.3
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 0.0e+00 1161.4 776 78.4
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 0.0e+00 1161.0 775 76.4
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 0.0e+00 1160.6 777 77.6
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 0.0e+00 1156.4 775 76.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 0.0e+00 1152.1 775 76.1
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 0.0e+00 1151.0 790 75.4
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 0.0e+00 1149.8 774 77.0
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 0.0e+00 1149.8 775 76.9
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 0.0e+00 1149.0 775 76.6
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1148.3 790 75.3
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1147.5 773 75.8
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 0.0e+00 1144.8 775 75.7
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 0.0e+00 1143.6 775 77.3
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1143.3 762 77.0
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1142.9 767 76.3
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 0.0e+00 1142.9 773 75.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 0.0e+00 1142.5 774 76.4
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 0.0e+00 1139.4 774 76.6
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 0.0e+00 1135.6 779 75.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 0.0e+00 1133.6 775 75.6
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1133.2 773 75.5
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 0.0e+00 1126.3 775 74.8
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 0.0e+00 1125.9 775 75.1
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1125.5 774 75.7
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 0.0e+00 1124.4 774 75.5
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 0.0e+00 1123.2 773 75.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 0.0e+00 1122.1 765 76.9
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 0.0e+00 1122.1 774 75.6
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 0.0e+00 1121.3 778 74.2
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 0.0e+00 1117.1 774 74.2
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 0.0e+00 1114.8 774 74.0
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 0.0e+00 1113.6 772 74.1
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 0.0e+00 1110.9 774 73.5
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 0.0e+00 1099.0 773 74.4
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 0.0e+00 1092.4 776 73.6
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 0.0e+00 1090.5 797 71.9
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1088.6 774 73.6
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 0.0e+00 1083.2 774 72.9
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 0.0e+00 1075.8 758 72.4
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 0.0e+00 1075.8 763 73.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.4e-310 1069.3 765 71.6
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.0e-310 1067.8 774 72.1
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 2.0e-309 1065.4 772 72.3
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.4e-309 1064.7 726 75.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.8e-308 1061.2 764 70.7
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 3.8e-308 1061.2 767 71.3
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.4e-308 1060.4 765 72.4
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 3.2e-307 1058.1 770 71.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 6.6e-305 1050.4 772 71.1
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.9e-304 1048.9 770 69.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 9.6e-304 1046.6 764 70.2
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 3.6e-303 1044.6 762 69.4
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.0e-302 1041.2 762 69.2
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 7.6e-301 1036.9 772 69.4
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.2e-298 1029.6 769 69.2
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 2.7e-298 1028.5 768 69.1
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 3.5e-298 1028.1 751 70.3
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.7e-297 1025.8 797 68.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 1.5e-296 1022.7 775 69.2
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 4.3e-296 1021.1 772 68.9
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 4.3e-296 1021.1 772 68.9
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.6e-295 1019.2 774 70.3
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 8.1e-295 1016.9 772 68.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 8.1e-295 1016.9 772 68.7
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 1.5e-293 1012.7 778 68.0
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 2.6e-293 1011.9 770 69.0
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 4.5e-293 1011.1 772 68.4
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 7.6e-293 1010.4 778 68.0
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 7.6e-293 1010.4 778 68.0
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 3.8e-292 1008.1 773 68.3
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 5.4e-291 1004.2 778 68.0
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 5.4e-291 1004.2 778 68.0
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 6.7e-289 997.3 773 68.0
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 1.9e-288 995.7 762 69.2
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 5.6e-288 994.2 772 67.7
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 7.4e-288 993.8 772 67.5
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 7.4e-288 993.8 773 68.2
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 2.8e-287 991.9 696 73.0
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 5.3e-286 987.6 767 66.8
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 5.3e-286 987.6 772 67.2
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 9.9e-285 983.4 633 78.0
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 2.1e-282 975.7 766 66.1
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 4.9e-276 954.5 773 66.2
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 2.6e-269 932.2 775 63.9
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 3.4e-269 931.8 767 65.1
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 4.5e-269 931.4 725 68.1
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 1.1e-267 926.8 775 64.1
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.1e-264 916.8 754 64.3
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 6.7e-257 891.0 777 61.9
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 3.3e-256 888.6 674 67.5
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 1.7e-255 886.3 776 62.0
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 4.8e-255 884.8 778 62.1
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 4.8e-255 884.8 778 62.1
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 8.2e-255 884.0 651 70.8
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.1e-254 883.6 770 60.4
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 2.5e-251 872.5 831 57.9
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.3e-249 865.9 764 59.3
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 2.0e-248 862.8 777 58.4
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 5.7e-248 861.3 747 62.5
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.0e-233 812.4 545 77.2
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.5e-227 793.5 544 75.4
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 4.7e-226 788.5 768 54.8
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 3.4e-224 782.3 738 59.2
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.7e-215 753.4 551 71.3
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.1e-210 736.5 775 53.2
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 1.7e-207 726.9 553 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 1.9e-203 713.4 770 50.1
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 1.5e-200 703.7 561 66.5
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.4e-198 696.4 778 50.4
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.0e-196 689.5 771 50.3
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.1e-180 635.6 765 49.8
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 4.8e-178 629.0 753 47.4
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 3.9e-172 609.4 388 80.9
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.3e-148 530.4 611 48.0
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.1e-137 495.0 390 64.4
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 1.0e-132 478.4 363 68.9
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-123 446.8 488 54.7
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 9.1e-113 412.1 747 35.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.1e-89 333.6 243 72.4
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 6.4e-82 309.7 773 28.1
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.2e-77 293.1 219 68.0
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 1.8e-76 291.6 548 38.0
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 5.2e-76 290.0 851 28.8
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.3e-55 222.2 223 55.6
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 2.5e-49 201.4 204 56.4
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 3.8e-42 177.6 122 73.8
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.5e-40 171.0 137 65.7
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 4.3e-38 164.1 151 57.0
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.2e-32 146.0 112 66.1
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 6.1e-32 143.7 102 70.6
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.7e-31 140.2 91 74.7
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 1.8e-28 132.1 98 76.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 2.4e-28 131.7 233 40.8
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.5e-25 121.7 274 35.8
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.2e-25 120.9 109 59.6
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.2e-24 119.4 80 71.2
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 8.2e-21 106.7 91 63.7
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 3.8e-18 97.8 75 66.7
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.2e-16 92.8 98 50.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 4.7e-16 90.9 116 40.5
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 1.8e-15 89.0 119 46.2
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 5.2e-15 87.4 79 57.0
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 9.7e-14 83.2 56 76.8
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 3.7e-13 81.3 88 50.0
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 8.2e-13 80.1 67 59.7
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 3.5e-11 74.7 73 54.8
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.9e-11 73.9 127 38.6
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 2.2e-10 72.0 73 53.4
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 5.0e-10 70.9 65 55.4
Medtr5g009630 Medicago truncatula HOM05D004543 ORTHO05D004261 8.5e-10 70.1 55 60.0
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 7.2e-09 67.0 63 55.6


User provided reference genes

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