Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 5.7e-52 207.6 128 100.0
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 2.9e-40 168.7 127 70.9
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 7.2e-39 164.1 127 67.7
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 2.0e-36 156.0 125 64.0
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 5.7e-36 154.5 128 68.0
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 2.8e-35 152.1 128 65.6
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 3.7e-35 151.8 129 64.3
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.4e-34 149.8 128 65.6
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 1.8e-34 149.4 131 61.8
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 2.4e-34 149.1 127 65.4
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 3.1e-34 148.7 124 61.3
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 6.9e-34 147.5 129 63.6
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 6.9e-34 147.5 130 60.8
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 9.1e-34 147.1 127 63.8
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.5e-33 146.4 127 59.8
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.6e-33 145.6 128 62.5
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 3.4e-33 145.2 128 68.0
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 7.7e-33 144.1 126 64.3
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 7.7e-33 144.1 125 62.4
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 7.7e-33 144.1 125 63.2
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 1.3e-32 143.3 128 73.4
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 1.3e-32 143.3 127 56.7
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 1.7e-32 142.9 127 62.2
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 2.2e-32 142.5 125 60.8
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 2.2e-32 142.5 125 60.8
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 8.5e-32 140.6 116 63.8
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 8.5e-32 140.6 125 60.0
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 2.5e-31 139.0 127 60.6
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 3.2e-31 138.7 127 59.8
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 5.5e-31 137.9 124 58.9
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 5.5e-31 137.9 127 61.4
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.5e-31 137.9 125 61.6
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 7.2e-31 137.5 127 59.8
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 7.2e-31 137.5 127 58.3
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 9.4e-31 137.1 127 59.8
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-30 136.7 125 61.6
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 3.6e-30 135.2 130 56.9
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 7.9e-30 134.0 129 58.1
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.0e-29 133.7 125 57.6
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 1.0e-29 133.7 118 62.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.4e-29 133.3 127 59.1
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 1.4e-29 133.3 127 56.7
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 1.4e-29 133.3 126 59.5
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 1.4e-29 133.3 118 63.6
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 3.0e-29 132.1 127 64.6
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 8.8e-29 130.6 128 57.8
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 8.8e-29 130.6 127 54.3
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.1e-28 130.2 126 60.3
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 1.1e-28 130.2 127 57.5
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 2.0e-28 129.4 126 60.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 2.6e-28 129.0 124 55.6
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 4.4e-28 128.3 129 58.1
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 5.7e-28 127.9 129 58.1
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 9.7e-28 127.1 125 58.4
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 3.7e-27 125.2 123 56.1
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 3.7e-27 125.2 124 58.9
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 6.3e-27 124.4 127 57.5
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 8.2e-27 124.0 127 54.3
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 1.4e-26 123.2 127 54.3
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 1.8e-26 122.9 116 60.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.8e-26 122.9 116 56.0
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 2.4e-26 122.5 126 57.9
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 4.1e-26 121.7 71 83.1
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 5.3e-26 121.3 127 55.9
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 9.1e-26 120.6 127 55.1
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 2.6e-25 119.0 129 55.0
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 3.5e-25 118.6 145 48.3
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 4.5e-25 118.2 127 55.1
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 4.5e-25 118.2 126 57.9
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 5.9e-25 117.9 130 52.3
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 5.9e-25 117.9 129 52.7
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 3.8e-24 115.2 122 54.1
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 5.0e-24 114.8 135 50.4
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.1e-23 113.6 116 57.8
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.9e-23 112.8 127 51.2
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.2e-23 111.7 116 57.8
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 5.5e-23 111.3 116 56.9
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.2e-23 110.9 117 54.7
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 9.4e-23 110.5 116 56.9
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.2e-22 110.2 125 49.6
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.2e-22 110.2 127 51.2
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.7e-22 109.0 116 51.7
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 2.7e-22 109.0 125 49.6
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 3.6e-22 108.6 125 50.4
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 3.6e-22 108.6 108 57.4
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 4.7e-22 108.2 129 52.7
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 4.7e-22 108.2 116 51.7
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 4.7e-22 108.2 116 56.0
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 6.1e-22 107.8 126 50.8
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.1e-22 107.8 114 57.0
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 8.0e-22 107.5 116 51.7
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 8.0e-22 107.5 116 51.7
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 8.0e-22 107.5 111 56.8
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 3.0e-21 105.5 128 52.3
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 6.7e-21 104.4 124 50.0
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-20 102.8 128 46.1
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.0e-20 102.8 137 47.4
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 2.6e-20 102.4 110 53.6
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 2.6e-20 102.4 110 53.6
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 4.4e-20 101.7 71 69.0
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.7e-20 100.5 125 48.0
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 9.7e-20 100.5 128 45.3
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 9.7e-20 100.5 128 46.9
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 9.7e-20 100.5 127 48.8
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 2.8e-19 99.0 146 44.5
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 3.7e-19 98.6 126 49.2
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 4.8e-19 98.2 117 47.9
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 8.2e-19 97.4 129 45.7
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 8.2e-19 97.4 71 64.8
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 1.4e-18 96.7 116 56.0
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 1.4e-18 96.7 133 45.1
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 1.8e-18 96.3 124 46.8
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 2.4e-18 95.9 101 55.4
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 7.0e-18 94.4 116 55.2
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 9.1e-18 94.0 84 63.1
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 7.7e-17 90.9 120 45.0
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 1.3e-16 90.1 129 45.0
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 2.2e-16 89.4 142 42.3
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 3.8e-16 88.6 92 57.6
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 8.5e-16 87.4 67 68.7
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.1e-15 87.0 147 38.1
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.2e-15 85.1 117 47.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 7.2e-15 84.3 109 45.0
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.6e-14 83.2 72 62.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.6e-14 82.0 64 67.2
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 4.7e-14 81.6 151 45.0
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 8.0e-14 80.9 129 40.3
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-13 80.1 58 70.7
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.4e-13 80.1 58 70.7
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.4e-13 80.1 58 70.7
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.8e-13 79.7 56 67.9
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 6.8e-13 77.8 70 60.0
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 8.8e-13 77.4 150 37.3
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-12 75.9 59 66.1
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.4e-12 75.5 69 55.1
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 3.4e-12 75.5 56 69.6
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 2.8e-11 72.4 86 54.7
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 4.8e-11 71.6 72 56.9
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 8.3e-11 70.9 72 56.9
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 1.4e-10 70.1 128 45.3
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 9.1e-10 67.4 57 64.9
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 8.5e-08 60.8 66 53.0
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.9e-07 59.7 36 77.8


User provided reference genes

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