Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p003574 Quercus lobata HOM05D001686 ORTHO05D001645 5.2e-136 487.6 235 100.0
QL10p003555 Quercus lobata HOM05D001686 ORTHO05D001645 4.6e-92 341.7 176 96.0
Haze_09074 Corylus avellana HOM05D001686 ORTHO05D043707 1.2e-18 97.8 181 34.3
C01p06540 Brassica napus HOM05D001686 ORTHO05D001645 1.7e-17 94.0 253 30.4
Cfa011995 Carpinus fangiana HOM05D001686 ORTHO05D043707 2.9e-17 93.2 224 32.6
Carub.0004s0530 Capsella rubella HOM05D001686 ORTHO05D001645 3.7e-17 92.8 139 41.7
ClCG09G002620 Citrullus lanatus HOM05D001686 ORTHO05D001645 4.9e-17 92.4 241 29.5
QL02p022791 Quercus lobata HOM05D001686 ORTHO05D001645 1.1e-16 91.3 138 38.4
A01p05920 Brassica napus HOM05D001686 ORTHO05D001645 1.8e-16 90.5 254 31.1
BraA01t00559Z Brassica rapa HOM05D001686 ORTHO05D001645 1.8e-16 90.5 254 31.1
BolC1t00649H Brassica oleracea HOM05D001686 ORTHO05D001645 5.4e-16 89.0 191 32.5
BcaB03g12746 Brassica carinata HOM05D001686 ORTHO05D001645 7.0e-16 88.6 131 39.7
A04p19770 Brassica napus HOM05D001686 ORTHO05D001645 9.2e-16 88.2 140 37.1
Ciclev10010442m.g Citrus clementina HOM05D001686 ORTHO05D001645 9.2e-16 88.2 161 34.2
Cfa011997 Carpinus fangiana HOM05D001686 ORTHO05D001645 1.2e-15 87.8 135 37.8
Haze_09068 Corylus avellana HOM05D001686 ORTHO05D001645 1.2e-15 87.8 129 38.8
Haze_09071 Corylus avellana HOM05D001686 ORTHO05D001645 1.2e-15 87.8 129 38.8
BraA04t17568Z Brassica rapa HOM05D001686 ORTHO05D001645 1.6e-15 87.4 138 37.0
QL02p022757 Quercus lobata HOM05D001686 ORTHO05D001645 2.7e-15 86.7 138 34.8
A08p18180 Brassica napus HOM05D001686 ORTHO05D001645 3.5e-15 86.3 131 38.9
BraA08t33771Z Brassica rapa HOM05D001686 ORTHO05D001645 3.5e-15 86.3 131 38.9
CSS0038409 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 3.5e-15 86.3 136 38.2
Nn2g11935 Nelumbo nucifera HOM05D001686 ORTHO05D001645 4.6e-15 85.9 140 38.6
BcaC01g01022 Brassica carinata HOM05D001686 ORTHO05D001645 5.9e-15 85.5 131 38.9
BcaC02g08341 Brassica carinata HOM05D001686 ORTHO05D001645 5.9e-15 85.5 138 37.0
C03p87340 Brassica napus HOM05D001686 ORTHO05D001645 5.9e-15 85.5 131 38.9
BolC3t21034H Brassica oleracea HOM05D001686 ORTHO05D001645 5.9e-15 85.5 131 38.9
BolC4t27077H Brassica oleracea HOM05D001686 ORTHO05D001645 5.9e-15 85.5 138 37.0
Phvul.003G161300 Phaseolus vulgaris HOM05D001686 ORTHO05D001645 5.9e-15 85.5 134 37.3
AL4G17050 Arabidopsis lyrata HOM05D001686 ORTHO05D001645 1.3e-14 84.3 134 38.1
AL7G19400 Arabidopsis lyrata HOM05D001686 ORTHO05D001645 1.3e-14 84.3 134 38.1
BcaC09g52034 Brassica carinata HOM05D001686 ORTHO05D001645 1.3e-14 84.3 242 29.8
ClCG11G002830 Citrullus lanatus HOM05D001686 ORTHO05D001645 1.7e-14 84.0 140 35.0
CARHR115750 Cardamine hirsuta HOM05D001686 ORTHO05D001645 2.3e-14 83.6 134 38.8
Medtr4g113670 Medicago truncatula HOM05D001686 ORTHO05D001645 2.3e-14 83.6 137 35.8
Lj4g0025282 Lotus japonicus HOM05D001686 ORTHO05D001645 3.0e-14 83.2 137 35.0
QL02p087418 Quercus lobata HOM05D001686 ORTHO05D001645 3.0e-14 83.2 137 36.5
CARHR192810 Cardamine hirsuta HOM05D001686 ORTHO05D001645 3.9e-14 82.8 223 30.9
Dinv41543 Davidia involucrata HOM05D001686 ORTHO05D001645 3.9e-14 82.8 137 36.5
Manes.08G088200 Manihot esculenta HOM05D001686 ORTHO05D001645 3.9e-14 82.8 141 35.5
CARHR240360 Cardamine hirsuta HOM05D001686 ORTHO05D001645 5.0e-14 82.4 134 38.1
Actinidia15688 Actinidia chinensis HOM05D001686 ORTHO05D001645 8.6e-14 81.6 137 35.8
AT4G32440 Arabidopsis thaliana HOM05D001686 ORTHO05D001645 8.6e-14 81.6 134 36.6
Peaxi162Scf00341g00619 Petunia axillaris HOM05D001686 ORTHO05D001645 8.6e-14 81.6 142 35.2
Prupe.1G473100 Prunus persica HOM05D001686 ORTHO05D001645 8.6e-14 81.6 137 35.8
Sed0012960 Sechium edule HOM05D001686 ORTHO05D001645 8.6e-14 81.6 140 34.3
GSVIVG01015486001 Vitis vinifera HOM05D001686 ORTHO05D001645 8.6e-14 81.6 137 36.5
Psat4g040760 Pisum sativum HOM05D001686 ORTHO05D001645 1.1e-13 81.3 141 34.8
TPR.G10689 Trifolium pratense HOM05D001686 ORTHO05D001645 1.5e-13 80.9 137 35.0
Dinv11616 Davidia involucrata HOM05D001686 ORTHO05D001645 1.9e-13 80.5 137 35.0
QL02p022765 Quercus lobata HOM05D001686 ORTHO05D001645 1.9e-13 80.5 138 34.1
Prupe.7G238100 Prunus persica HOM05D001686 ORTHO05D001645 2.5e-13 80.1 137 35.8
Ah.01g008580 Amaranthus hybridus HOM05D001686 ORTHO05D001645 3.3e-13 79.7 142 30.3
Actinidia26411 Actinidia chinensis HOM05D001686 ORTHO05D001645 4.3e-13 79.3 170 33.5
CiPaw.08G013400 Carya illinoinensis HOM05D001686 ORTHO05D001645 4.3e-13 79.3 138 35.5
COL.COLO4_12876 Corchorus olitorius HOM05D002659 ORTHO05D002940 4.3e-13 79.3 134 35.8
COL.COLO4_12880 Corchorus olitorius HOM05D001686 ORTHO05D001645 4.3e-13 79.3 233 30.5
Hma1.2p1_0007F.1_g005120 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 4.3e-13 79.3 134 35.8
Nn8g39366 Nelumbo nucifera HOM05D001686 ORTHO05D001645 4.3e-13 79.3 139 35.3
CiPaw.03G240100 Carya illinoinensis HOM05D001686 ORTHO05D001645 5.6e-13 79.0 137 35.8
Hma1.2p1_0000F.1_g000790 Hydrangea macrophylla HOM05D001686 ORTHO05D001645 5.6e-13 79.0 137 34.3
Lalb_Chr07g0178741 Lupinus albus HOM05D001686 ORTHO05D001645 5.6e-13 79.0 138 34.8
Potri.001G173900 Populus trichocarpa HOM05D001686 ORTHO05D001645 5.6e-13 79.0 139 37.4
MELO3C004526.2 Cucumis melo HOM05D001686 ORTHO05D001645 7.3e-13 78.6 134 35.8
CsaV3_2G002670 Cucumis sativus L. HOM05D001686 ORTHO05D001645 7.3e-13 78.6 134 35.8
Dinv36568 Davidia involucrata HOM05D001686 ORTHO05D001645 7.3e-13 78.6 139 33.8
FAN28G0829 Fragaria x ananassa HOM05D001686 ORTHO05D001645 7.3e-13 78.6 136 34.6
Nitab4.5_0001669g0100 Nicotiana tabacum HOM05D001686 ORTHO05D001645 7.3e-13 78.6 166 31.9
C04p55520 Brassica napus HOM05D001686 ORTHO05D001645 9.5e-13 78.2 236 28.8
MD08G1144800 Malus domestica HOM05D001686 ORTHO05D001645 9.5e-13 78.2 136 35.3
Nitab4.5_0002882g0030 Nicotiana tabacum HOM05D001686 ORTHO05D001645 9.5e-13 78.2 166 33.1
TAR383G0741 Trochodendron aralioides HOM05D001686 ORTHO05D001645 9.5e-13 78.2 141 34.8
CiPaw.04G169400 Carya illinoinensis HOM05D001686 ORTHO05D001645 1.2e-12 77.8 137 38.0
Gohir.A10G076900 Gossypium hirsutum HOM05D001686 ORTHO05D001645 1.2e-12 77.8 135 37.0
HanXRQChr03g0062271 Helianthus annuus HOM05D001686 ORTHO05D001645 1.2e-12 77.8 191 33.5
AT2G25590 Arabidopsis thaliana HOM05D001686 ORTHO05D001645 1.6e-12 77.4 135 37.8
RcHm_v2.0_Chr7g0226201 Rosa chinensis HOM05D001686 ORTHO05D001645 1.6e-12 77.4 137 35.0
Lj1g0008840 Lotus japonicus HOM05D001686 ORTHO05D001645 2.1e-12 77.0 191 27.2
Peaxi162Scf00244g01122 Petunia axillaris HOM05D001686 ORTHO05D001645 2.8e-12 76.6 138 36.2
BcaB08g35199 Brassica carinata HOM05D001686 ORTHO05D001645 3.6e-12 76.3 130 38.5
ECA233G3215 Erigeron canadensis HOM05D001686 ORTHO05D001645 3.6e-12 76.3 152 32.9
MD02G1037200 Malus domestica HOM05D001686 ORTHO05D001645 3.6e-12 76.3 137 31.4
TAR625G0862 Trochodendron aralioides HOM05D001686 ORTHO05D001645 3.6e-12 76.3 143 34.3
Ca_21706_v3 Cicer arietinum L. HOM05D001686 ORTHO05D001645 4.7e-12 75.9 137 32.1
Cfa013182 Carpinus fangiana HOM05D001686 ORTHO05D001645 6.2e-12 75.5 140 35.0
Lalb_Chr13g0302061 Lupinus albus HOM05D001686 ORTHO05D001645 6.2e-12 75.5 137 35.0
Actinidia07439 Actinidia chinensis HOM05D001686 ORTHO05D001645 8.0e-12 75.1 174 33.3
Haze_21572 Corylus avellana HOM05D001686 ORTHO05D001645 8.0e-12 75.1 138 35.5
Lalb_Chr08g0243951 Lupinus albus HOM05D001686 ORTHO05D001645 8.0e-12 75.1 133 33.1
Manes.11G051335 Manihot esculenta HOM05D001686 ORTHO05D001645 8.0e-12 75.1 137 33.6
Nitab4.5_0008089g0020 Nicotiana tabacum HOM05D001686 ORTHO05D001645 8.0e-12 75.1 176 31.8
Peaxi162Scf00004g00027 Petunia axillaris HOM05D001686 ORTHO05D001645 8.0e-12 75.1 133 36.1
Sc18g0000830 Simmondsia chinensis HOM05D001686 ORTHO05D001645 8.0e-12 75.1 138 36.2
GSVIVG01035806001 Vitis vinifera HOM05D001686 ORTHO05D001645 8.0e-12 75.1 137 36.5
Cfa011996 Carpinus fangiana HOM05D001686 ORTHO05D001645 1.8e-11 73.9 152 33.6
Lalb_Chr23g0268751 Lupinus albus HOM05D001686 ORTHO05D001645 1.8e-11 73.9 135 33.3
AUR62030670 Chenopodium quinoa HOM05D001686 ORTHO05D001645 2.3e-11 73.6 182 29.7
MD15G1177400 Malus domestica HOM05D001686 ORTHO05D001645 2.3e-11 73.6 137 32.1
Nitab4.5_0000151g0210 Nicotiana tabacum HOM05D001686 ORTHO05D001645 3.1e-11 73.2 173 29.5
PGSC0003DMG400019480 Solanum tuberosum HOM05D001686 ORTHO05D001645 3.1e-11 73.2 138 36.2
Sc08g0006830 Simmondsia chinensis HOM05D001686 ORTHO05D001645 4.0e-11 72.8 134 34.3
FvH4_2g29660 Fragaria vesca HOM05D001686 ORTHO05D001645 5.2e-11 72.4 137 32.8
FAN24G1163 Fragaria x ananassa HOM05D001686 ORTHO05D001645 5.2e-11 72.4 141 31.9
HanXRQChr03g0062261 Helianthus annuus HOM05D001686 ORTHO05D001645 5.2e-11 72.4 191 32.5
CSS0037107 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 6.8e-11 72.0 137 35.0
CSS0041540 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 6.8e-11 72.0 137 35.0
Actinidia04628 Actinidia chinensis HOM05D001686 ORTHO05D001645 8.9e-11 71.6 137 32.8
CSS0011180 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 8.9e-11 71.6 137 35.0
CSS0028350 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 8.9e-11 71.6 137 35.0
CSS0033015 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 8.9e-11 71.6 137 33.6
BcaB06g28075 Brassica carinata HOM05D001686 ORTHO05D001645 1.5e-10 70.9 243 28.8
DCAR_022885 Daucus carota HOM05D001686 ORTHO05D001645 1.5e-10 70.9 133 36.1
PGR142G2856 Punica granatum HOM05D001686 ORTHO05D001645 1.5e-10 70.9 134 33.6
Sopen11g003230 Solanum pennellii HOM05D001686 ORTHO05D001645 1.5e-10 70.9 138 34.1
TPR.G31772 Trifolium pratense HOM05D001686 ORTHO05D001645 2.0e-10 70.5 194 27.8
Ciclev10008447m.g Citrus clementina HOM05D001686 ORTHO05D001645 2.6e-10 70.1 137 32.8
DCAR_022880 Daucus carota HOM05D001686 ORTHO05D001645 2.6e-10 70.1 162 32.7
ECA234G2876 Erigeron canadensis HOM05D001686 ORTHO05D001645 2.6e-10 70.1 137 32.1
vmacro05195 Vaccinium macrocarpon HOM05D001686 ORTHO05D001645 2.6e-10 70.1 137 35.0
PGSC0003DMG400023489 Solanum tuberosum HOM05D001686 ORTHO05D001645 3.4e-10 69.7 134 32.1
Atru.chr7.1235 Acer truncatum HOM05D001686 ORTHO05D001645 4.4e-10 69.3 137 31.4
ClCG06G010710 Citrullus lanatus HOM05D001686 ORTHO05D001645 4.4e-10 69.3 132 31.1
ClCG09G002590 Citrullus lanatus HOM05D001686 ORTHO05D001645 4.4e-10 69.3 132 31.1
Dinv30178 Davidia involucrata HOM05D001686 ORTHO05D001645 4.4e-10 69.3 88 40.9
FAN27G3157 Fragaria x ananassa HOM05D001686 ORTHO05D001645 4.4e-10 69.3 141 31.9
Solyc11g007340.2 Solanum lycopersicum HOM05D001686 ORTHO05D001645 5.8e-10 68.9 138 34.1
AUR62033452 Chenopodium quinoa HOM05D001686 ORTHO05D001645 7.5e-10 68.6 138 32.6
Cpa.g.sc427.1 Carica papaya HOM05D001686 ORTHO05D001645 9.8e-10 68.2 137 30.7
CiPaw.07G220800 Carya illinoinensis HOM05D001686 ORTHO05D001645 9.8e-10 68.2 141 34.0
Eucgr.C01115 Eucalyptus grandis HOM05D001686 ORTHO05D001645 9.8e-10 68.2 138 31.2
Solyc05g055340.4 Solanum lycopersicum HOM05D001686 ORTHO05D001645 9.8e-10 68.2 136 32.4
EL10Ac2g02590 Beta vulgaris HOM05D001686 ORTHO05D001645 1.3e-09 67.8 141 31.2
AUR62011070 Chenopodium quinoa HOM05D001686 ORTHO05D001645 1.3e-09 67.8 138 31.9
Medtr3g107680 Medicago truncatula HOM05D001686 ORTHO05D001645 1.3e-09 67.8 133 30.1
RcHm_v2.0_Chr6g0298631 Rosa chinensis HOM05D001686 ORTHO05D001645 1.3e-09 67.8 137 29.2
HPP92_023173 Vanilla planifolia HOM05D001686 ORTHO05D001645 1.3e-09 67.8 147 28.6
BraA03t10292Z Brassica rapa HOM05D001686 ORTHO05D001645 1.7e-09 67.4 130 33.8
arahy.Tifrunner.gnm1.ann1.5D2PRQ Arachis hypogaea HOM05D001686 ORTHO05D001645 2.9e-09 66.6 137 31.4
CAN.G1550.10 Capsicum annuum HOM05D001686 ORTHO05D001645 2.9e-09 66.6 134 34.3
Sopen05g033780 Solanum pennellii HOM05D001686 ORTHO05D001645 2.9e-09 66.6 136 32.4
Aqoxy7G03755 Aquilegia oxysepala HOM05D001686 ORTHO05D001645 3.7e-09 66.2 155 27.7
vmacro20651 Vaccinium macrocarpon HOM05D001686 ORTHO05D001645 3.7e-09 66.2 149 30.9
arahy.Tifrunner.gnm1.ann1.ZYX06Z Arachis hypogaea HOM05D001686 ORTHO05D001645 8.3e-09 65.1 137 30.7
Cc06_g08940 Coffea canephora HOM05D001686 ORTHO05D001645 8.3e-09 65.1 143 29.4
Aqoxy7G02048 Aquilegia oxysepala HOM05D001686 ORTHO05D001645 1.1e-08 64.7 137 30.7
FAN20G2480 Fragaria x ananassa HOM05D005914 ORTHO05D007361 1.1e-08 64.7 141 30.5
Lsat_1_v5_gn_5_97921 Lactuca sativa HOM05D001686 ORTHO05D001645 1.1e-08 64.7 146 32.2
EL10Ac8g18591 Beta vulgaris HOM05D001686 ORTHO05D001645 1.4e-08 64.3 138 31.9
A03p09760 Brassica napus HOM05D001686 ORTHO05D001645 3.2e-08 63.2 129 31.0
DCAR_006237 Daucus carota HOM05D001686 ORTHO05D001645 3.2e-08 63.2 131 33.6
Oeu020097.1 Olea europaea HOM05D001686 ORTHO05D001645 5.4e-08 62.4 135 34.1
Ah.09g225590 Amaranthus hybridus HOM05D001686 ORTHO05D001645 1.6e-07 60.8 137 32.1
CDE01G0560 Ceratophyllum demersum HOM05D001686 ORTHO05D001645 1.6e-07 60.8 138 31.9
Sc09g0008400 Simmondsia chinensis HOM05D001686 ORTHO05D001645 1.6e-07 60.8 130 33.1
SalBow4G0109 Salvia bowleyana HOM05D001686 ORTHO05D001645 2.0e-07 60.5 152 33.6
MSTRG.11764 Avicennia marina HOM05D001686 ORTHO05D001645 2.7e-07 60.1 199 26.6
CAN.G534.18 Capsicum annuum HOM05D001686 ORTHO05D001645 2.7e-07 60.1 125 34.4
MSTRG.1638 Avicennia marina HOM05D001686 ORTHO05D001645 3.5e-07 59.7 150 27.3
Nn3g19461 Nelumbo nucifera HOM05D001686 ORTHO05D001645 3.5e-07 59.7 137 33.6
TAR365G0339 Trochodendron aralioides HOM05D001686 ORTHO05D001645 4.6e-07 59.3 137 30.7
Lsat_1_v5_gn_7_42561 Lactuca sativa HOM05D001686 ORTHO05D001645 1.0e-06 58.2 164 28.7
QL12p042459 Quercus lobata HOM05D001686 ORTHO05D001645 1.0e-06 58.2 158 31.6
MSTRG.25854 Avicennia marina HOM05D001686 ORTHO05D001645 1.3e-06 57.8 177 24.9
Manes.01G203200 Manihot esculenta HOM05D001686 ORTHO05D001645 6.6e-06 55.5 138 31.2
Oeu015830.1 Olea europaea HOM05D001686 ORTHO05D001645 6.6e-06 55.5 141 30.5
BcaC07g40855 Brassica carinata HOM05D001686 ORTHO05D001645 8.6e-06 55.1 131 31.3
CSS0015643 Camellia sinensis var. sinensis HOM05D001686 ORTHO05D001645 8.6e-06 55.1 75 37.3
TAR362G0644 Trochodendron aralioides HOM05D001686 ORTHO05D001645 8.6e-06 55.1 132 31.1


User provided reference genes

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