Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 1.2e-36 156.0 78 100.0
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 1.2e-36 156.0 78 100.0
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 3.7e-30 134.4 78 82.1
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 1.4e-29 132.5 78 82.1
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 5.4e-29 130.6 78 80.8
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 6.5e-27 123.6 77 76.6
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 3.2e-26 121.3 78 71.8
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 4.2e-26 120.9 78 71.8
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 9.4e-26 119.8 77 71.4
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 9.4e-26 119.8 78 70.5
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 1.2e-25 119.4 78 73.1
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.7e-25 118.2 78 71.8
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.6e-25 117.9 77 68.8
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.7e-25 117.5 77 72.7
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 6.1e-25 117.1 78 69.2
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 6.1e-25 117.1 78 69.2
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 8.0e-25 116.7 78 67.9
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 8.0e-25 116.7 78 67.9
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 8.0e-25 116.7 77 72.7
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 8.0e-25 116.7 78 69.2
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 1.4e-24 115.9 78 69.2
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.8e-24 115.5 78 67.9
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 2.3e-24 115.2 78 69.2
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 2.3e-24 115.2 78 67.9
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 2.3e-24 115.2 77 70.1
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 2.3e-24 115.2 78 69.2
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 2.3e-24 115.2 78 69.2
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 3.0e-24 114.8 77 68.8
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 4.0e-24 114.4 77 68.8
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 4.0e-24 114.4 78 65.4
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 4.0e-24 114.4 77 70.1
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 4.0e-24 114.4 78 69.2
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 5.2e-24 114.0 76 69.7
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 5.2e-24 114.0 78 66.7
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 5.2e-24 114.0 77 66.2
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 5.2e-24 114.0 78 69.2
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 5.2e-24 114.0 75 70.7
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 6.8e-24 113.6 77 67.5
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 8.8e-24 113.2 76 68.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 8.8e-24 113.2 77 70.1
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 65.4
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.2e-23 112.8 77 67.5
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 66.7
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 1.2e-23 112.8 78 70.5
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 1.5e-23 112.5 78 64.1
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 1.5e-23 112.5 77 68.8
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 2.0e-23 112.1 77 67.5
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 66.7
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 2.6e-23 111.7 78 64.1
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 2.6e-23 111.7 75 69.3
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 3.4e-23 111.3 78 67.9
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 4.4e-23 110.9 78 65.4
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 78 65.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.4e-23 110.9 77 66.2
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.7e-23 110.5 85 64.7
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 5.7e-23 110.5 78 65.4
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 5.7e-23 110.5 78 65.4
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 7.5e-23 110.2 78 66.7
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 7.5e-23 110.2 77 66.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 9.8e-23 109.8 78 66.7
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 9.8e-23 109.8 73 69.9
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 9.8e-23 109.8 75 65.3
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 1.3e-22 109.4 76 65.8
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 1.3e-22 109.4 78 64.1
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 1.7e-22 109.0 78 62.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.7e-22 109.0 78 64.1
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 2.2e-22 108.6 77 62.3
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 2.2e-22 108.6 78 65.4
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 2.2e-22 108.6 76 68.4
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 2.2e-22 108.6 78 65.4
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 2.8e-22 108.2 78 65.4
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 3.7e-22 107.8 77 64.9
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 4.9e-22 107.5 77 63.6
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 65.8
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 4.9e-22 107.5 79 65.8
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.3e-22 107.1 77 62.3
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 6.3e-22 107.1 79 65.8
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 8.3e-22 106.7 65 75.4
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 1.1e-21 106.3 78 61.5
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 1.4e-21 105.9 75 65.3
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.4e-21 105.1 78 61.5
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 2.4e-21 105.1 78 60.3
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.1e-21 104.8 77 63.6
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 5.4e-21 104.0 69 69.6
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 7.0e-21 103.6 72 65.3
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 7.0e-21 103.6 72 65.3
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 7.0e-21 103.6 76 65.8
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 9.1e-21 103.2 75 62.7
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.2e-20 102.8 78 60.3
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.6e-20 102.4 67 71.6
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 1.6e-20 102.4 68 67.6
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 1.6e-20 102.4 78 62.8
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.0e-20 102.1 61 73.8
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.5e-20 101.3 78 59.0
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 63.2
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 3.5e-20 101.3 76 63.2
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 3.5e-20 101.3 70 68.6
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 4.5e-20 100.9 64 73.4
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 4.5e-20 100.9 67 70.1
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-19 99.8 61 73.8
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 1.3e-19 99.4 78 57.7
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.3e-19 99.4 66 68.2
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 1.3e-19 99.4 71 64.8
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-19 99.4 78 59.0
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 1.7e-19 99.0 78 57.7
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 2.9e-19 98.2 76 59.2
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.9e-19 98.2 61 72.1
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 5.0e-19 97.4 78 60.3
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 5.0e-19 97.4 68 63.2
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 8.6e-19 96.7 73 60.3
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.6e-19 96.7 71 62.0
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 8.6e-19 96.7 71 62.0
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 8.6e-19 96.7 78 55.1
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 1.1e-18 96.3 76 56.6
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 1.5e-18 95.9 75 61.3
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 1.5e-18 95.9 75 61.3
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 1.5e-18 95.9 75 61.3
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 1.5e-18 95.9 75 61.3
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 1.9e-18 95.5 76 55.3
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 1.9e-18 95.5 76 55.3
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 1.9e-18 95.5 76 55.3
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 2.5e-18 95.1 76 55.3
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 2.5e-18 95.1 58 72.4
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 4.2e-18 94.4 76 53.9
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.8e-17 91.7 73 56.2
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 6.1e-17 90.5 70 55.7
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 8.0e-17 90.1 55 72.7
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 1.4e-16 89.4 52 75.0
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 1.4e-16 89.4 61 63.9
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 3.0e-16 88.2 65 61.5
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 5.2e-16 87.4 53 71.7
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 1.5e-15 85.9 62 58.1
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 2.0e-15 85.5 60 60.0
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.0e-15 85.5 76 50.0
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 2.6e-15 85.1 59 61.0
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 9.8e-15 83.2 76 47.4
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.3e-14 82.8 52 65.4
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 2.2e-14 82.0 67 52.2
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 2.0e-12 75.5 73 43.8
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 5.9e-12 73.9 64 50.0
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 8.6e-11 70.1 66 50.0
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 7.3e-10 67.0 48 62.5
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 7.3e-10 67.0 79 41.8
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 2.8e-09 65.1 72 43.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.8e-08 62.4 74 40.5


User provided reference genes

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