Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 1.3e-70 269.6 133 100.0
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 4.8e-70 267.7 133 99.2
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.5e-63 246.1 133 89.5
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.8e-62 241.9 133 91.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 2.8e-62 241.9 133 88.7
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 4.6e-57 224.6 126 85.7
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 2.3e-56 222.2 132 82.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 2.3e-56 222.2 133 82.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.0e-56 221.9 133 78.9
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 5.1e-56 221.1 126 83.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 8.8e-56 220.3 131 79.4
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.5e-55 219.5 133 79.7
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.0e-55 219.2 126 82.5
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 2.0e-55 219.2 132 81.8
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 2.0e-55 219.2 133 82.7
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 3.3e-55 218.4 130 80.0
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 4.3e-55 218.0 132 79.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.4e-55 217.2 133 78.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 9.7e-55 216.9 128 82.0
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 9.7e-55 216.9 130 80.8
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 9.7e-55 216.9 133 79.7
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 9.7e-55 216.9 126 82.5
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 1.3e-54 216.5 132 80.3
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 3.7e-54 214.9 130 80.8
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 3.7e-54 214.9 132 78.0
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 4.8e-54 214.5 132 78.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.8e-54 214.5 132 78.0
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 4.8e-54 214.5 128 80.5
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.2e-54 213.8 128 81.2
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 8.2e-54 213.8 130 80.8
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 1.1e-53 213.4 124 81.5
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.1e-53 213.4 125 80.8
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 1.1e-53 213.4 122 82.8
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.4e-53 213.0 133 79.7
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.4e-53 212.2 129 79.1
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 3.1e-53 211.8 128 78.9
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.1e-53 211.8 128 82.0
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 4.1e-53 211.5 133 76.7
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 4.1e-53 211.5 129 79.8
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 5.3e-53 211.1 131 79.4
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 5.3e-53 211.1 128 80.5
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 9.1e-53 210.3 122 82.0
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-52 209.5 128 79.7
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.6e-52 208.8 132 75.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 2.6e-52 208.8 122 80.3
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 3.4e-52 208.4 123 78.9
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 3.4e-52 208.4 133 75.9
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.5e-52 208.0 130 76.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 5.9e-52 207.6 130 74.6
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.0e-51 206.8 132 75.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-51 206.5 128 78.9
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.7e-51 206.1 126 78.6
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 1.7e-51 206.1 130 77.7
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.2e-51 205.7 132 76.5
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 2.9e-51 205.3 126 78.6
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.8e-51 204.9 125 80.8
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 5.0e-51 204.5 132 74.2
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 6.5e-51 204.1 129 77.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 6.5e-51 204.1 131 78.6
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 124 76.6
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 1.4e-50 203.0 123 78.0
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 3.2e-50 201.8 141 70.9
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 5.5e-50 201.1 123 79.7
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.2e-49 199.9 131 73.3
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.6e-49 199.5 122 77.9
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.6e-49 199.5 133 73.7
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 2.1e-49 199.1 129 75.2
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 6.1e-49 197.6 122 77.0
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 1.0e-48 196.8 123 77.2
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.4e-47 191.4 126 73.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 5.7e-47 191.0 127 74.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.3e-46 189.9 128 73.4
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 1.3e-46 189.9 123 71.5
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.7e-46 189.5 127 72.4
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.2e-46 189.1 128 74.2
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 3.7e-46 188.3 129 71.3
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 4.8e-46 188.0 128 72.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.1e-45 186.8 128 71.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-45 186.4 126 72.2
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 2.4e-45 185.7 112 77.7
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 7.0e-45 184.1 123 73.2
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 9.1e-45 183.7 128 71.9
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.5e-44 183.0 127 67.7
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 4.5e-44 181.4 125 67.2
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 7.7e-44 180.6 128 66.4
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.0e-43 180.3 128 70.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.3e-43 179.9 127 68.5
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 1.7e-43 179.5 129 70.5
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 2.2e-43 179.1 129 68.2
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-43 178.7 128 64.8
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 3.8e-43 178.3 127 66.1
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 5.0e-43 177.9 128 64.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.5e-43 177.2 100 82.0
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 8.5e-43 177.2 100 82.0
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 8.5e-43 177.2 128 71.1
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 8.5e-43 177.2 125 68.8
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.1e-42 176.8 122 71.3
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.4e-42 176.4 117 73.5
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 1.9e-42 176.0 119 71.4
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 2.5e-42 175.6 120 70.0
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 2.5e-42 175.6 118 72.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.2e-42 175.3 112 73.2
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 4.2e-42 174.9 119 72.3
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 5.5e-42 174.5 128 68.0
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 7.2e-42 174.1 124 70.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 7.2e-42 174.1 127 66.1
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 9.4e-42 173.7 112 74.1
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 9.4e-42 173.7 124 69.4
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 1.6e-41 172.9 109 78.0
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-41 172.6 123 64.2
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 2.1e-41 172.6 128 62.5
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 3.6e-41 171.8 124 68.5
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 3.6e-41 171.8 125 68.8
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 8.0e-41 170.6 107 78.5
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.0e-40 170.2 125 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 1.4e-40 169.9 119 67.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.0e-39 166.0 129 62.8
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 7.4e-39 164.1 125 65.6
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 9.7e-39 163.7 125 65.6
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 9.7e-39 163.7 127 64.6
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.2e-38 162.5 133 58.6
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.1e-37 160.2 131 61.1
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.4e-37 159.8 125 61.6
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.4e-37 159.8 125 61.6
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.4e-37 159.8 125 61.6
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 1.4e-37 159.8 119 65.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 3.1e-37 158.7 127 61.4
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 5.3e-37 157.9 119 66.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 1.2e-36 156.8 129 65.9
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.5e-36 155.2 117 65.8
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 5.9e-36 154.5 125 59.2
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 5.9e-36 154.5 133 60.2
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 7.7e-36 154.1 119 62.2
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.7e-35 152.9 126 58.7
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 2.9e-35 152.1 119 62.2
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 3.8e-35 151.8 121 62.0
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 3.8e-35 151.8 124 58.9
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 3.8e-35 151.8 116 62.1
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.5e-35 151.0 131 58.0
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 6.5e-35 151.0 120 61.7
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 8.5e-35 150.6 120 60.8
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 61.0
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 61.0
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.9e-34 149.4 118 61.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.5e-34 149.1 131 56.5
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 7.2e-34 147.5 124 58.9
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 9.4e-34 147.1 118 61.0
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 9.4e-34 147.1 92 75.0
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 9.4e-34 147.1 121 58.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 1.2e-33 146.7 125 58.4
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 1.2e-33 146.7 125 58.4
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.6e-33 146.4 131 55.0
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 6.1e-33 144.4 122 59.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.4e-32 143.3 123 57.7
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 1.2e-31 140.2 128 57.8
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 6.3e-30 134.4 119 57.1
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-28 130.2 119 54.6
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 4.2e-26 121.7 79 74.7
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.7e-25 118.2 61 83.6
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.8e-24 116.3 61 85.2
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.7e-20 102.4 65 78.5
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 7.7e-20 100.9 82 67.1
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 2.3e-19 99.4 64 79.7
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.9e-19 99.0 62 80.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 3.8e-19 98.6 68 75.0
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.9e-18 96.3 64 75.0
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.9e-18 96.3 64 75.0
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.6e-17 93.2 112 42.0
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.6e-17 93.2 53 73.6
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.8e-16 87.8 53 77.4
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 8.9e-16 87.4 64 68.8
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-15 87.0 119 42.0
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.2e-15 87.0 66 62.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.3e-11 73.6 51 76.5
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 5.6e-10 68.2 59 61.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.8e-09 65.9 68 54.4
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 3.4e-07 58.9 39 76.9
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 9.8e-07 57.4 64 46.9
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 9.8e-07 57.4 37 70.3
HanXRQChr02g0053341 Helianthus annuus HOM05D003887 ORTHO05D048295 2.2e-06 56.2 33 72.7


User provided reference genes

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