Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 5.0e-99 364.4 177 100.0
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 8.0e-81 303.9 181 82.3
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 3.6e-73 278.5 185 73.5
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.4e-72 276.6 222 66.2
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 2.0e-71 272.7 181 73.5
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 1.7e-70 269.6 181 72.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 4.1e-69 265.0 181 69.1
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.7e-68 262.3 221 62.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.0e-67 258.8 195 66.2
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-67 258.5 183 68.3
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.9e-67 258.5 188 67.6
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.0e-67 258.1 179 69.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 5.0e-67 258.1 181 72.9
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 6.6e-67 257.7 185 69.2
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.9e-66 256.1 184 69.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 3.3e-66 255.4 185 70.8
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.3e-66 255.4 181 68.5
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.3e-66 255.0 181 68.0
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 5.6e-66 254.6 183 67.2
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 7.3e-66 254.2 181 68.5
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.2e-65 253.4 182 69.8
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 2.1e-65 252.7 184 66.3
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 3.6e-65 251.9 182 69.8
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 6.2e-65 251.1 184 67.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-64 250.4 181 69.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.8e-64 249.6 180 70.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.3e-64 249.2 181 65.7
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.3e-64 249.2 179 64.2
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 2.3e-64 249.2 182 64.8
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 2.3e-64 249.2 184 65.8
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.0e-64 248.4 163 75.5
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 4.0e-64 248.4 185 65.9
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 8.9e-64 247.3 183 69.9
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.2e-63 246.9 190 63.7
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.5e-63 246.5 183 65.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.5e-63 246.5 184 66.3
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.6e-63 245.7 184 65.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.4e-63 245.4 185 65.4
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.7e-62 243.0 180 64.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.2e-62 242.7 188 64.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.9e-62 242.3 180 66.1
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 2.9e-62 242.3 179 64.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.7e-62 241.9 183 67.8
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.7e-62 241.9 181 67.4
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 4.9e-62 241.5 181 66.9
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 8.3e-62 240.7 181 66.3
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.4e-61 240.0 160 70.0
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.9e-61 239.6 183 67.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 1.9e-61 239.6 185 63.2
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 2.4e-61 239.2 182 64.8
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 4.1e-61 238.4 177 65.5
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.1e-61 238.4 182 67.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.1e-61 238.4 183 67.2
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 5.4e-61 238.0 178 68.5
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.4e-61 238.0 167 70.1
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.6e-60 236.5 178 66.3
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.7e-60 235.7 183 64.5
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 3.5e-60 235.3 177 63.3
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 3.5e-60 235.3 193 62.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 6.0e-60 234.6 180 64.4
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 7.8e-60 234.2 180 67.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.7e-59 233.0 182 61.5
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 1.7e-59 233.0 181 62.4
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 3.9e-59 231.9 137 75.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 6.6e-59 231.1 181 65.7
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 8.6e-59 230.7 188 63.3
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.1e-58 230.3 188 62.2
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 2.5e-58 229.2 194 59.8
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 3.3e-58 228.8 181 62.4
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 3.3e-58 228.8 137 74.5
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 3.3e-58 228.8 188 62.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 4.3e-58 228.4 185 61.1
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.3e-58 228.4 185 61.1
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 9.5e-58 227.3 182 59.9
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 9.5e-58 227.3 181 64.1
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.2e-57 226.9 180 62.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 2.8e-57 225.7 188 60.6
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.8e-57 225.7 194 58.2
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 3.6e-57 225.3 164 66.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 4.7e-57 224.9 190 62.1
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 8.1e-57 224.2 183 62.8
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 8.1e-57 224.2 188 60.6
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 8.1e-57 224.2 186 59.7
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.1e-56 223.8 189 61.9
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.8e-56 223.0 180 61.1
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-56 222.6 182 61.5
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 2.3e-56 222.6 191 59.2
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 3.1e-56 222.2 184 59.8
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 3.1e-56 222.2 247 49.8
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 5.2e-56 221.5 192 57.8
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 5.2e-56 221.5 147 71.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.4e-55 218.8 182 58.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 3.4e-55 218.8 181 63.0
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 7.6e-55 217.6 136 72.1
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.9e-55 217.2 181 58.6
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-54 216.9 191 59.7
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.3e-54 216.9 189 59.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 1.3e-54 216.9 136 69.9
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.7e-54 216.5 194 58.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.7e-54 216.5 190 57.9
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 189 56.6
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 181 58.0
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-54 216.1 136 73.5
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 4.9e-54 214.9 185 58.9
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 6.4e-54 214.5 182 58.2
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.1e-53 213.8 270 45.6
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.1e-53 213.8 129 74.4
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.4e-53 213.4 149 67.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.2e-53 212.2 203 55.7
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 2.7e-52 209.1 189 55.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.7e-52 209.1 134 68.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-51 206.5 190 57.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 3.0e-51 205.7 114 80.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 5.1e-51 204.9 184 57.1
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.1e-50 203.8 179 58.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.1e-50 203.8 170 58.8
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.8e-49 199.1 184 54.9
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.8e-48 196.4 178 57.3
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 5.2e-48 194.9 158 63.9
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.2e-48 194.9 158 63.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 6.8e-48 194.5 116 73.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.0e-43 180.6 137 63.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.3e-43 180.3 117 68.4
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 4.9e-38 161.8 122 58.2
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.4e-38 161.0 111 69.4
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.7e-36 156.0 124 54.0
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.5e-36 155.6 123 57.7
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.3e-35 152.9 86 75.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.4e-31 139.0 136 56.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.8e-30 135.6 130 60.8
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.9e-30 135.2 95 71.6
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.3e-29 131.0 86 69.8
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.2e-28 130.6 158 43.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.2e-28 130.6 65 87.7
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.0e-27 127.5 79 69.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 9.6e-26 120.9 71 71.8
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.6e-25 120.2 71 70.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.6e-23 112.8 113 55.8
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.5e-21 106.3 102 47.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.2e-21 105.9 60 78.3
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 2.7e-20 102.8 113 43.4
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.2e-17 91.7 86 57.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 5.3e-08 62.0 105 37.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 5.3e-08 62.0 35 68.6
SGA_v2.0_scaffold5G02809 Striga asiatica HOM05D005248 ORTHO05D006409 1.0e-06 57.8 143 35.0
Gohir.A11G038866 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.7e-06 57.0 67 49.3


User provided reference genes

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