Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p054672 Quercus lobata HOM05D004974 ORTHO05D001537 2.7e-56 221.9 119 100.0
Haze_24788 Corylus avellana HOM05D004974 ORTHO05D001537 6.7e-39 164.1 122 74.6
Duzib133G1519 Durio zibethinus HOM05D004974 ORTHO05D001537 2.0e-35 152.5 102 77.5
Thecc.01G226800 Theobroma cacao HOM05D004974 ORTHO05D001537 4.5e-35 151.4 108 72.2
Eucgr.K02174 Eucalyptus grandis HOM05D004974 ORTHO05D001537 5.8e-35 151.0 88 86.4
Eucgr.K02179 Eucalyptus grandis HOM05D004974 ORTHO05D001537 5.8e-35 151.0 88 86.4
MELO3C026996.2 Cucumis melo HOM05D004974 ORTHO05D001537 7.6e-35 150.6 107 75.7
Potri.014G189500 Populus trichocarpa HOM05D004974 ORTHO05D001537 1.0e-34 150.2 108 78.7
CsaV3_3G029890 Cucumis sativus L. HOM05D004974 ORTHO05D001537 2.2e-34 149.1 107 75.7
ClCG07G001900 Citrullus lanatus HOM05D004974 ORTHO05D001537 3.8e-34 148.3 107 72.9
PGR044G1568 Punica granatum HOM05D004974 ORTHO05D001537 4.9e-34 147.9 108 72.2
Sabra14G0144900 Salix brachista HOM05D004974 ORTHO05D001537 4.9e-34 147.9 108 76.9
Manes.13G045300 Manihot esculenta HOM05D004974 ORTHO05D001537 6.5e-34 147.5 105 77.1
Atru.chr5.2001 Acer truncatum HOM05D004974 ORTHO05D001537 8.4e-34 147.1 88 83.0
Phvul.008G125000 Phaseolus vulgaris HOM05D004974 ORTHO05D001537 1.1e-33 146.7 95 77.9
Gohir.A11G137200 Gossypium hirsutum HOM05D004974 ORTHO05D001537 1.4e-33 146.4 88 83.0
Gorai.007G153800 Gossypium raimondii HOM05D004974 ORTHO05D001537 1.4e-33 146.4 88 83.0
Actinidia30081 Actinidia chinensis HOM05D004974 ORTHO05D001537 2.5e-33 145.6 85 84.7
Dinv19208 Davidia involucrata HOM05D004974 ORTHO05D000168 2.5e-33 145.6 91 76.9
Gohir.D11G143600 Gossypium hirsutum HOM05D004974 ORTHO05D001537 4.2e-33 144.8 88 81.8
Actinidia09484 Actinidia chinensis HOM05D000836 ORTHO05D000709 7.1e-33 144.1 89 79.8
Lj2C1132G7 Lonicera japonica HOM05D004974 ORTHO05D000168 7.1e-33 144.1 109 74.3
Lalb_Chr01g0022381 Lupinus albus HOM05D004974 ORTHO05D001537 7.1e-33 144.1 105 72.4
Oeu022257.1 Olea europaea HOM05D004974 ORTHO05D001537 7.1e-33 144.1 95 77.9
GSVIVG01028650001 Vitis vinifera HOM05D004974 ORTHO05D001537 9.3e-33 143.7 105 73.3
Glyma.08G354800 Glycine max HOM05D004974 ORTHO05D001537 1.6e-32 142.9 108 71.3
COL.COLO4_08178 Corchorus olitorius HOM05D004974 ORTHO05D001537 2.1e-32 142.5 107 70.1
Rhsim01G0256000 Rhododendron simsii HOM05D004974 ORTHO05D001537 2.7e-32 142.1 85 83.5
Ciclev10020126m.g Citrus clementina HOM05D004974 ORTHO05D001537 3.5e-32 141.7 98 75.5
Rhsim13G0044600 Rhododendron simsii HOM05D004974 ORTHO05D001537 3.5e-32 141.7 99 74.7
VMungo1383G2852 Vigna mungo HOM05D004974 ORTHO05D001537 3.5e-32 141.7 88 79.5
CSS0012166 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 6.0e-32 141.0 99 75.8
TWI18G1322 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 7.9e-32 140.6 83 86.7
CSS0031489 Camellia sinensis var. sinensis HOM05D004974 ORTHO05D001537 1.0e-31 140.2 99 74.7
EL10Ac3g05326 Beta vulgaris HOM05D004974 ORTHO05D001537 1.3e-31 139.8 101 73.3
Peaxi162Scf00107g00164 Petunia axillaris HOM05D004974 ORTHO05D001537 1.3e-31 139.8 98 73.5
TWI36G0218 Tripterygium wilfordii HOM05D004974 ORTHO05D001537 1.3e-31 139.8 105 72.4
vmacro02753 Vaccinium macrocarpon HOM05D004974 ORTHO05D001537 1.8e-31 139.4 82 84.1
Eucgr.G01752 Eucalyptus grandis HOM05D004974 ORTHO05D001537 2.3e-31 139.0 88 79.5
Lalb_Chr03g0041801 Lupinus albus HOM05D004974 ORTHO05D001537 3.0e-31 138.7 105 66.7
Sed0026000 Sechium edule HOM05D004974 ORTHO05D001537 3.0e-31 138.7 107 71.0
FvH4_2g19180 Fragaria vesca HOM05D004974 ORTHO05D001537 5.1e-31 137.9 85 81.2
FAN24G0854 Fragaria x ananassa HOM05D004974 ORTHO05D001537 5.1e-31 137.9 85 81.2
AUR62031806 Chenopodium quinoa HOM05D004974 ORTHO05D001537 6.7e-31 137.5 99 73.7
Solyc09g061320.4 Solanum lycopersicum HOM05D004974 ORTHO05D001537 6.7e-31 137.5 98 74.5
Sopen09g024080 Solanum pennellii HOM05D004974 ORTHO05D001537 6.7e-31 137.5 98 74.5
FAN15G2952 Fragaria x ananassa HOM05D004974 ORTHO05D001537 1.1e-30 136.7 85 80.0
Lj1A85T20 Lonicera japonica HOM05D004974 ORTHO05D001537 1.5e-30 136.3 84 79.8
MD05G1176600 Malus domestica HOM05D004974 ORTHO05D001537 1.5e-30 136.3 98 74.5
AUR62008904 Chenopodium quinoa HOM05D004974 ORTHO05D001537 1.9e-30 136.0 99 72.7
THA.LOC104802676 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 1.9e-30 136.0 87 79.3
Cpa.g.sc8.163 Carica papaya HOM05D004974 ORTHO05D001537 2.5e-30 135.6 101 68.3
HanXRQChr16g0532351 Helianthus annuus HOM05D004974 ORTHO05D001537 3.3e-30 135.2 89 76.4
RcHm_v2.0_Chr6g0284971 Rosa chinensis HOM05D004974 ORTHO05D001537 3.3e-30 135.2 85 80.0
Sp3g06020 Schrenkiella parvula HOM05D004974 ORTHO05D001537 3.3e-30 135.2 87 78.2
TAR365G0028 Trochodendron aralioides HOM05D004974 ORTHO05D001537 3.3e-30 135.2 86 80.2
CARHR081670 Cardamine hirsuta HOM05D004974 ORTHO05D001537 4.3e-30 134.8 87 78.2
ECA232G3165 Erigeron canadensis HOM05D004974 ORTHO05D001537 4.3e-30 134.8 86 77.9
Nitab4.5_0000045g0090 Nicotiana tabacum HOM05D004974 ORTHO05D001537 4.3e-30 134.8 98 72.4
Prupe.8G203700 Prunus persica HOM05D004974 ORTHO05D001537 4.3e-30 134.8 108 69.4
Thhalv10020757m.g Eutrema salsugineum HOM05D004974 ORTHO05D001537 5.7e-30 134.4 100 71.0
MD10G1165300 Malus domestica HOM05D004974 ORTHO05D001537 5.7e-30 134.4 105 68.6
Nitab4.5_0006192g0010 Nicotiana tabacum HOM05D004974 ORTHO05D001537 5.7e-30 134.4 98 72.4
AL3G18310 Arabidopsis lyrata HOM05D004974 ORTHO05D001537 7.4e-30 134.0 87 77.0
AT3G07080 Arabidopsis thaliana HOM05D004974 ORTHO05D001537 7.4e-30 134.0 87 77.0
Nn1g07839 Nelumbo nucifera HOM05D004974 ORTHO05D001537 7.4e-30 134.0 85 78.8
BolC7t41758H Brassica oleracea HOM05D004974 ORTHO05D001537 9.6e-30 133.7 84 77.4
Carub.0003s0659 Capsella rubella HOM05D004974 ORTHO05D001537 9.6e-30 133.7 107 66.4
Lj1g0028171 Lotus japonicus HOM05D004974 ORTHO05D001537 9.6e-30 133.7 106 67.0
Sc17g0002410 Simmondsia chinensis HOM05D004974 ORTHO05D001537 9.6e-30 133.7 103 68.0
Ca_07523_v3 Cicer arietinum L. HOM05D004974 ORTHO05D001537 1.3e-29 133.3 108 67.6
Psat3g144880 Pisum sativum HOM05D004974 ORTHO05D001537 1.3e-29 133.3 108 66.7
Actinidia23725 Actinidia chinensis HOM05D004974 ORTHO05D001537 2.1e-29 132.5 96 71.9
Cc01_g17120 Coffea canephora HOM05D004974 ORTHO05D001537 2.1e-29 132.5 99 70.7
Lj5g0019880 Lotus japonicus HOM05D004974 ORTHO05D001537 2.1e-29 132.5 84 81.0
A03p35060 Brassica napus HOM05D004974 ORTHO05D001537 2.8e-29 132.1 87 75.9
C03p42640 Brassica napus HOM05D004974 ORTHO05D001537 2.8e-29 132.1 87 75.9
BolC3t16534H Brassica oleracea HOM05D004974 ORTHO05D001537 2.8e-29 132.1 87 75.9
BraA03t12686Z Brassica rapa HOM05D004974 ORTHO05D001537 2.8e-29 132.1 87 75.9
THA.LOC104818948 Tarenaya hassleriana HOM05D004974 ORTHO05D001537 2.8e-29 132.1 97 70.1
Nn4g24998 Nelumbo nucifera HOM05D004974 ORTHO05D001537 3.7e-29 131.7 108 65.7
arahy.Tifrunner.gnm1.ann1.7S1X7X Arachis hypogaea HOM05D004974 ORTHO05D001537 4.8e-29 131.3 86 74.4
arahy.Tifrunner.gnm1.ann1.GEM3QE Arachis hypogaea HOM05D004974 ORTHO05D001537 4.8e-29 131.3 86 74.4
CAN.G900.32 Capsicum annuum HOM05D004974 ORTHO05D001537 4.8e-29 131.3 98 70.4
TPR.G9031 Trifolium pratense HOM05D004974 ORTHO05D001537 4.8e-29 131.3 108 66.7
PSO017G1462 Papaver somniferum HOM05D004974 ORTHO05D001537 6.2e-29 131.0 86 79.1
PSO063G7040 Papaver somniferum HOM05D004974 ORTHO05D001537 6.2e-29 131.0 86 79.1
C07p01960 Brassica napus HOM05D004974 ORTHO05D001537 8.2e-29 130.6 84 76.2
PGSC0003DMG400017652 Solanum tuberosum HOM05D004974 ORTHO05D001537 1.1e-28 130.2 96 72.9
BraA01t04399Z Brassica rapa HOM05D004974 ORTHO05D001537 1.4e-28 129.8 89 75.3
Medtr7g058520 Medicago truncatula HOM05D004974 ORTHO05D001537 1.8e-28 129.4 108 64.8
BcaC09g47938 Brassica carinata HOM05D004974 ORTHO05D001537 3.1e-28 128.6 89 74.2
BolC1t05570H Brassica oleracea HOM05D004974 ORTHO05D001537 3.1e-28 128.6 89 74.2
Sed0019567 Sechium edule HOM05D004974 ORTHO05D001537 3.1e-28 128.6 105 68.6
C07p12710 Brassica napus HOM05D004974 ORTHO05D001537 4.1e-28 128.3 84 76.2
Hund05533 Selenicereus undatus HOM05D004974 ORTHO05D001537 5.3e-28 127.9 105 65.7
Hund05537 Selenicereus undatus HOM05D004974 ORTHO05D001537 5.3e-28 127.9 105 65.7
Hund18374 Selenicereus undatus HOM05D004974 ORTHO05D001537 5.3e-28 127.9 104 65.4
Aqoxy2G03888 Aquilegia oxysepala HOM05D004974 ORTHO05D001537 9.0e-28 127.1 108 63.9
SalBow1G3148 Salvia bowleyana HOM05D004974 ORTHO05D001537 9.0e-28 127.1 84 73.8
SGA_v2.0_scaffold1G00729 Striga asiatica HOM05D004974 ORTHO05D001537 9.0e-28 127.1 84 72.6
Aa31LG5G17640 Aethionema arabicum HOM05D004974 ORTHO05D001537 1.5e-27 126.3 95 70.5
BcaC05g29837 Brassica carinata HOM05D004974 ORTHO05D001537 2.0e-27 125.9 98 69.4
C05p60300 Brassica napus HOM05D004974 ORTHO05D001537 2.0e-27 125.9 98 69.4
MSTRG.18386 Avicennia marina HOM05D004974 ORTHO05D001537 2.6e-27 125.6 84 72.6
MSTRG.21423 Avicennia marina HOM05D004974 ORTHO05D001537 4.5e-27 124.8 85 71.8
Migut.D00531 Erythranthe guttata HOM05D004974 ORTHO05D001537 1.7e-26 122.9 92 67.4
EL10Ac7g17825 Beta vulgaris HOM05D004974 ORTHO05D001537 3.8e-26 121.7 104 61.5
CDE08G1692 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 5.0e-26 121.3 107 60.7
Os06g0681700 Oryza sativa ssp. japonica HOM05D004974 ORTHO05D001537 2.5e-25 119.0 69 85.5
unitig_749.g13727 Utricularia gibba HOM05D004974 ORTHO05D001537 2.5e-25 119.0 82 72.0
CAN.G154.2 Capsicum annuum HOM05D004974 ORTHO05D001537 3.2e-25 118.6 95 67.4
CDE02G3969 Ceratophyllum demersum HOM05D004974 ORTHO05D001537 3.2e-25 118.6 107 61.7
Oeu004060.1 Olea europaea HOM05D004974 ORTHO05D001537 4.2e-25 118.2 71 80.3
Zm00001eb273630 Zea mays HOM05D004974 ORTHO05D001537 7.2e-25 117.5 111 60.4
ATR0736G069 Amborella trichopoda HOM05D004974 ORTHO05D001537 9.3e-25 117.1 86 72.1
HPP92_000858 Vanilla planifolia HOM05D004974 ORTHO05D001537 2.1e-24 115.9 75 78.7
BolC5t34678H Brassica oleracea HOM05D004974 ORTHO05D001537 2.7e-24 115.5 83 71.1
BcaC06g36634 Brassica carinata HOM05D004974 ORTHO05D001537 4.6e-24 114.8 84 72.6
BolC7t40605H Brassica oleracea HOM05D004974 ORTHO05D001537 4.6e-24 114.8 84 72.6
Zm00001eb225240 Zea mays HOM05D004974 ORTHO05D001537 7.9e-24 114.0 110 61.8
VMungo0720G1354 Vigna mungo HOM05D004974 ORTHO05D001537 3.0e-23 112.1 70 78.6
MBI10_g06044_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 5.1e-23 111.3 106 59.4
MBI16_g31263_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 3.3e-22 108.6 84 64.3
HPP92_026551 Vanilla planifolia HOM05D004974 ORTHO05D001537 4.3e-22 108.2 92 62.0
HPP92_002198 Vanilla planifolia HOM05D004974 ORTHO05D001537 1.6e-21 106.3 92 60.9
SEGI_31222 Sequoiadendron giganteum HOM05D004974 ORTHO05D001537 2.2e-21 105.9 78 67.9
BcaC05g29757 Brassica carinata HOM05D004974 ORTHO05D001537 2.8e-21 105.5 84 65.5
PSO170G3054 Papaver somniferum HOM05D004974 ORTHO05D001537 6.3e-21 104.4 67 76.1
SMO167G0060 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 6.3e-21 104.4 80 63.8
SMO347G0321 Selaginella moellendorffii HOM05D004974 ORTHO05D001537 6.3e-21 104.4 80 63.8
PSO407G0193 Papaver somniferum HOM05D004974 ORTHO05D001537 1.1e-20 103.6 103 60.2
VMungo0540G2436 Vigna mungo HOM05D004974 ORTHO05D001537 4.1e-20 101.7 69 75.4
Pp3c2_11660 Physcomitrium patens HOM05D004974 ORTHO05D001537 5.3e-20 101.3 78 66.7
BcaB04g21310 Brassica carinata HOM05D004974 ORTHO05D001537 1.5e-19 99.8 87 63.2
Mapoly0028s0131 Marchantia polymorpha HOM05D004974 ORTHO05D001537 7.7e-19 97.4 101 51.5
MBI10_g47169_MAGBIO Magnolia biondii HOM05D004974 ORTHO05D001537 6.1e-16 87.8 69 65.2
MD04G1105300 Malus domestica HOM05D004974 ORTHO05D001537 1.4e-15 86.7 48 91.7
PRCOL_00001439 Prasinoderma coloniale HOM05D004974 ORTHO05D001537 2.0e-11 72.8 96 46.9
vmacro14757 Vaccinium macrocarpon HOM05D006066 ORTHO05D007720 5.0e-10 68.2 43 72.1
MCO05G003 Micromonas commoda HOM05D004974 ORTHO05D001537 1.1e-09 67.0 72 51.4
A05p41120 Brassica napus HOM05D004974 ORTHO05D001537 2.6e-06 55.8 31 90.3
BraA05t22838Z Brassica rapa HOM05D004974 ORTHO05D001537 2.6e-06 55.8 31 90.3
CiPaw.07G232000 Carya illinoinensis HOM05D002641 ORTHO05D001537 7.4e-06 54.3 78 38.5
QL02p018454 Quercus lobata HOM05D002641 ORTHO05D001537 7.4e-06 54.3 78 41.0
SGA_v2.0_scaffold20G09102 Striga asiatica HOM05D002641 ORTHO05D001537 9.7e-06 53.9 75 41.3


User provided reference genes

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