Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 0.0e+00 1353.6 671 100.0
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 0.0e+00 1328.5 671 98.1
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 0.0e+00 1094.0 676 81.1
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 0.0e+00 1091.3 676 80.6
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 0.0e+00 1077.8 676 79.9
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 6.4e-288 993.8 658 74.5
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.5e-284 982.6 677 71.9
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.2e-282 974.2 659 73.1
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 3.4e-281 971.5 637 73.6
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 3.5e-278 961.4 674 70.2
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 6.0e-278 960.7 674 69.7
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 7.8e-278 960.3 665 71.7
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.0e-277 959.9 672 70.2
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 3.0e-277 958.4 660 72.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 8.6e-277 956.8 662 70.7
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.6e-275 952.6 674 69.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.8e-275 951.8 663 70.7
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.7e-275 951.0 674 69.4
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.1e-271 939.9 671 69.3
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.4e-271 939.5 676 69.8
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.3e-269 932.9 636 71.7
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 2.5e-268 928.7 636 71.5
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 7.3e-268 927.2 674 68.4
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 2.1e-267 925.6 644 71.3
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 4.7e-267 924.5 639 70.7
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 8.1e-267 923.7 665 69.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.1e-266 923.3 636 71.2
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 1.3e-264 916.4 669 69.7
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.9e-264 914.4 681 67.0
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 4.9e-264 914.4 670 70.3
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 1.2e-262 909.8 660 68.3
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 2.7e-262 908.7 640 69.7
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.5e-262 908.3 672 67.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 5.1e-261 904.4 688 66.9
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.5e-260 902.9 647 69.2
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.5e-260 902.1 634 69.6
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.6e-259 899.4 646 68.9
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.1e-259 899.0 637 69.2
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 2.1e-259 899.0 668 66.9
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 3.6e-259 898.3 665 67.1
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.6e-259 898.3 676 66.9
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.1e-258 896.7 688 66.0
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 5.3e-258 894.4 641 68.6
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 1.2e-257 893.3 663 68.5
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 2.6e-257 892.1 642 68.8
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 4.5e-257 891.3 655 68.2
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 5.8e-257 891.0 671 67.2
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 3.8e-256 888.3 671 66.8
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.1e-255 886.7 664 67.5
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 2.4e-255 885.6 672 66.8
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 1.6e-254 882.9 658 66.3
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 4.6e-254 881.3 668 66.5
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.8e-253 879.4 647 66.3
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.3e-252 875.2 668 65.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 7.4e-252 874.0 580 73.1
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 7.4e-252 874.0 666 66.1
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 1.3e-248 863.2 640 67.7
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 2.2e-248 862.4 661 64.8
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 2.2e-248 862.4 588 70.4
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 3.8e-248 861.7 662 64.5
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.2e-246 856.7 653 66.8
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.0e-245 853.6 661 66.1
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.7e-245 850.9 665 65.4
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.5e-244 849.0 658 64.6
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.7e-243 845.1 636 66.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.7e-243 845.1 662 65.4
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 4.8e-243 844.7 668 63.6
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 1.4e-242 843.2 659 64.5
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 5.3e-242 841.3 674 63.9
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.5e-241 839.7 670 63.9
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 2.6e-241 839.0 664 64.6
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 1.0e-240 837.0 582 70.3
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.0e-240 837.0 670 64.8
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.7e-240 836.3 664 65.1
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 2.2e-240 835.9 638 65.8
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 4.9e-240 834.7 673 64.0
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 4.9e-240 834.7 670 64.5
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 8.7e-237 823.9 580 69.3
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 4.3e-236 821.6 662 62.4
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 7.4e-236 820.8 647 65.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 1.6e-235 819.7 674 62.9
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.4e-234 816.6 666 63.1
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 1.8e-234 816.2 605 67.1
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 3.1e-234 815.5 659 62.7
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.1e-234 815.1 671 62.3
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 6.9e-234 814.3 670 62.4
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 1.3e-232 810.1 665 63.2
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 1.9e-231 806.2 665 62.7
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 2.5e-231 805.8 665 62.7
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 7.2e-231 804.3 672 62.1
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 9.4e-231 803.9 663 62.7
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 6.7e-229 797.7 665 62.4
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 1.1e-226 790.4 605 65.5
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.2e-225 786.9 661 60.8
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.0e-224 781.6 638 62.5
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 1.4e-223 780.0 660 60.0
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 1.8e-218 763.1 699 57.5
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 9.1e-218 760.8 561 66.8
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 9.1e-218 760.8 647 58.7
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 2.6e-209 732.6 605 61.2
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.7e-195 685.6 549 61.9
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.2e-181 638.6 492 63.6
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.2e-178 629.4 576 56.1
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 2.5e-175 619.8 393 80.2
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 7.3e-167 591.7 677 47.7
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.6e-166 589.3 506 60.5
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-157 559.7 598 51.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.7e-152 543.9 587 51.6
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.1e-145 520.4 391 68.0
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 3.5e-145 519.6 429 58.3
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.8e-139 499.6 669 44.4
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 4.0e-133 479.6 530 47.5
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 1.8e-125 454.1 843 36.7
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 3.2e-122 443.4 645 41.4
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 3.7e-110 403.3 226 86.7
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 7.2e-106 389.0 567 39.9
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.0e-96 357.1 205 80.0
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.1e-90 338.6 282 60.6
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 5.9e-84 316.2 324 53.4
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 8.6e-75 285.8 219 65.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 5.7e-71 273.1 230 57.8
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.3e-70 271.9 402 44.5
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 1.3e-67 261.9 607 32.8
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 1.6e-60 238.4 171 74.9
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.0e-59 235.7 663 30.5
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.1e-56 225.7 709 29.9
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.6e-55 221.1 652 29.8
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 2.2e-54 218.0 172 66.9
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.9e-53 214.9 145 75.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 4.9e-46 190.3 145 62.1
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-45 188.0 237 47.3
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-45 188.0 237 47.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 7.8e-44 183.0 121 74.4
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 1.7e-35 155.2 140 58.6
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-34 152.5 310 36.5
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 9.6e-34 149.4 111 63.1
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-32 144.8 179 42.5
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.9e-30 137.9 234 39.7
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.4e-30 136.3 234 39.3
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 8.4e-30 136.3 234 39.3
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.4e-30 136.3 234 39.3
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 8.4e-30 136.3 234 39.3
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.9e-29 135.2 106 71.7
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 2.1e-28 131.7 186 44.1
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.6e-25 120.9 207 37.2
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 9.0e-24 116.3 127 51.2
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.5e-23 115.5 127 51.2
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.5e-23 115.5 163 43.6
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 2.0e-23 115.2 127 50.4
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.7e-20 104.8 60 90.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.3e-19 101.7 60 88.3
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.7e-10 70.5 50 62.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.8e-08 65.5 40 70.0
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 5.3e-08 63.9 71 46.5
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 2.0e-07 62.0 71 45.1


User provided reference genes

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