Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p052989 Quercus lobata HOM05D005553 ORTHO05D006866 0.0e+00 1129.0 585 100.0
QL09p052121 Quercus lobata HOM05D005553 ORTHO05D006866 0.0e+00 1097.8 585 97.6
Cfa002842 Carpinus fangiana HOM05D005553 ORTHO05D006866 2.5e-248 862.1 612 74.5
MD10G1161200 Malus domestica HOM05D005553 ORTHO05D006866 4.2e-235 818.1 612 72.1
RcHm_v2.0_Chr6g0284311 Rosa chinensis HOM05D005553 ORTHO05D006866 1.6e-234 816.2 601 71.4
Prupe.8G200200 Prunus persica HOM05D005553 ORTHO05D006866 1.8e-230 802.7 579 72.2
FAN27G0725 Fragaria x ananassa HOM05D005553 ORTHO05D006866 2.4e-230 802.4 568 73.6
FvH4_2g18680 Fragaria vesca HOM05D005553 ORTHO05D006866 3.0e-225 785.4 572 72.4
FAN24G0205 Fragaria x ananassa HOM05D005553 ORTHO05D006866 3.0e-225 785.4 572 72.4
Hma1.2p1_1018F.1_g248400 Hydrangea macrophylla HOM05D005553 ORTHO05D006866 1.9e-224 782.7 558 72.6
CSS0002030 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 4.3e-224 781.6 612 67.3
TWI36G0825 Tripterygium wilfordii HOM05D005553 ORTHO05D006866 2.8e-223 778.9 561 72.2
CANSAT01G0440 Cannabis sativa HOM05D005553 ORTHO05D006866 5.3e-222 774.6 576 69.4
Dinv12662 Davidia involucrata HOM05D005553 ORTHO05D006866 1.7e-220 769.6 619 66.9
CiPaw.03G146800 Carya illinoinensis HOM05D005553 ORTHO05D006866 1.1e-219 766.9 531 75.7
Ciclev10019403m.g Citrus clementina HOM05D005553 ORTHO05D006866 3.2e-219 765.4 612 66.5
Atru.chr6.1417 Acer truncatum HOM05D005553 ORTHO05D006866 4.6e-218 761.5 573 68.8
Sabra02G0186400 Salix brachista HOM05D005553 ORTHO05D006866 1.0e-217 760.4 607 71.3
Potri.002G245000 Populus trichocarpa HOM05D005553 ORTHO05D006866 3.0e-217 758.8 609 70.0
Manes.13G047900 Manihot esculenta HOM05D005553 ORTHO05D006866 1.3e-215 753.4 588 68.5
Oeu023098.1 Olea europaea HOM05D005553 ORTHO05D006866 3.1e-214 748.8 605 63.5
Lalb_Chr03g0041571 Lupinus albus HOM05D005553 ORTHO05D006866 4.1e-214 748.4 564 67.6
Medtr7g056117 Medicago truncatula HOM05D005553 ORTHO05D006866 5.3e-214 748.0 594 66.2
Lj1g0021333 Lotus japonicus HOM05D005553 ORTHO05D006866 2.0e-213 746.1 597 65.0
GSVIVG01038357001 Vitis vinifera HOM05D005553 ORTHO05D006866 4.5e-213 745.0 555 71.2
Cpa.g.sc8.131 Carica papaya HOM05D005553 ORTHO05D006866 5.9e-213 744.6 584 67.5
vmacro14742 Vaccinium macrocarpon HOM05D005553 ORTHO05D006866 6.5e-212 741.1 586 66.6
Thecc.01G222300 Theobroma cacao HOM05D005553 ORTHO05D006866 8.5e-212 740.7 575 69.4
Gohir.D07G206400 Gossypium hirsutum HOM05D005553 ORTHO05D006866 4.2e-211 738.4 571 69.5
Phvul.008G130400 Phaseolus vulgaris HOM05D005553 ORTHO05D006866 4.2e-211 738.4 590 65.3
Ca_24091_v3 Cicer arietinum L. HOM05D005553 ORTHO05D006866 5.5e-211 738.0 593 64.4
Gorai.001G232700 Gossypium raimondii HOM05D005553 ORTHO05D006866 1.2e-210 736.9 572 69.2
VMungo1383G1602 Vigna mungo HOM05D005553 ORTHO05D006866 6.1e-210 734.6 592 65.5
Glyma.18G166600 Glycine max HOM05D005553 ORTHO05D006866 1.0e-209 733.8 595 65.5
CSS0038931 Camellia sinensis var. sinensis HOM05D005553 ORTHO05D006866 3.0e-209 732.3 612 65.0
Gohir.A07G200000 Gossypium hirsutum HOM05D005553 ORTHO05D006866 3.0e-209 732.3 571 69.0
COL.COLO4_15644 Corchorus olitorius HOM05D005553 ORTHO05D006866 8.8e-209 730.7 572 68.5
Psat3g147960 Pisum sativum HOM05D005553 ORTHO05D006866 1.1e-208 730.3 601 65.1
Cc01_g16820 Coffea canephora HOM05D005553 ORTHO05D006866 1.7e-207 726.5 558 66.8
CsaV3_6G002380 Cucumis sativus L. HOM05D005553 ORTHO05D006866 2.2e-207 726.1 615 61.1
Duzib138G1946 Durio zibethinus HOM05D005553 ORTHO05D006866 8.2e-207 724.2 572 68.7
PGSC0003DMG400017493 Solanum tuberosum HOM05D005553 ORTHO05D006866 8.2e-207 724.2 605 63.0
PGR044G2083 Punica granatum HOM05D005553 ORTHO05D006866 4.1e-206 721.8 604 62.9
Sopen09g022770 Solanum pennellii HOM05D005553 ORTHO05D006866 4.5e-205 718.4 576 63.9
Haze_24835 Corylus avellana HOM05D005553 ORTHO05D006866 5.9e-205 718.0 597 66.3
Solyc09g059600.4 Solanum lycopersicum HOM05D005553 ORTHO05D006866 1.7e-204 716.5 576 63.7
Glyma.08G349700 Glycine max HOM05D005553 ORTHO05D006866 2.2e-204 716.1 596 64.3
arahy.Tifrunner.gnm1.ann1.T3HSIJ Arachis hypogaea HOM05D005553 ORTHO05D006866 1.9e-203 713.0 613 62.5
Nn1g07927 Nelumbo nucifera HOM05D005553 ORTHO05D006866 1.9e-203 713.0 589 64.0
Nitab4.5_0000045g0420 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.5e-203 712.6 635 60.0
Eucgr.K02143 Eucalyptus grandis HOM05D005553 ORTHO05D006866 3.2e-203 712.2 615 61.6
FAN15G3597 Fragaria x ananassa HOM05D005553 ORTHO05D006866 4.2e-203 711.8 619 64.3
arahy.Tifrunner.gnm1.ann1.K25WW2 Arachis hypogaea HOM05D005553 ORTHO05D006866 5.5e-203 711.4 612 62.3
CAN.G5.44 Capsicum annuum HOM05D005553 ORTHO05D006866 9.4e-203 710.7 579 63.0
MSTRG.17999 Avicennia marina HOM05D005553 ORTHO05D006866 1.6e-202 709.9 611 61.9
Carub.0003s0670 Capsella rubella HOM05D005553 ORTHO05D006866 2.3e-201 706.1 584 64.2
HanXRQChr07g0189551 Helianthus annuus HOM05D005553 ORTHO05D006866 8.8e-201 704.1 583 62.4
AL3G18430 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 5.7e-200 701.4 584 64.4
Sp3g06120 Schrenkiella parvula HOM05D005553 ORTHO05D006866 1.3e-199 700.3 585 64.3
Thhalv10020331m.g Eutrema salsugineum HOM05D005553 ORTHO05D006866 2.8e-199 699.1 585 64.3
A05p41030 Brassica napus HOM05D005553 ORTHO05D006866 4.8e-199 698.4 584 64.4
Ah.08g214520 Amaranthus hybridus HOM05D005553 ORTHO05D006866 8.2e-199 697.6 579 63.0
CARHR081820 Cardamine hirsuta HOM05D005553 ORTHO05D006866 8.2e-199 697.6 614 62.1
BcaC05g29847 Brassica carinata HOM05D005553 ORTHO05D006866 1.1e-198 697.2 580 64.8
Hund05570 Selenicereus undatus HOM05D005553 ORTHO05D006866 1.4e-198 696.8 585 62.1
PSO063G5023 Papaver somniferum HOM05D005553 ORTHO05D006866 2.4e-198 696.0 586 60.2
BcaC05g29748 Brassica carinata HOM05D005553 ORTHO05D006866 9.1e-198 694.1 580 63.8
Aqoxy2G03234 Aquilegia oxysepala HOM05D005553 ORTHO05D006866 1.2e-197 693.7 589 60.4
AL384U10020 Arabidopsis lyrata HOM05D005553 ORTHO05D006866 1.6e-197 693.3 585 63.4
BolC5t34669H Brassica oleracea HOM05D005553 ORTHO05D006866 2.6e-197 692.6 580 64.3
BraA05t22829Z Brassica rapa HOM05D005553 ORTHO05D006866 2.6e-197 692.6 584 63.9
C05p60190 Brassica napus HOM05D005553 ORTHO05D006866 4.5e-197 691.8 580 64.3
THA.LOC104818968 Tarenaya hassleriana HOM05D005553 ORTHO05D006866 4.5e-197 691.8 607 62.1
AT3G07180 Arabidopsis thaliana HOM05D005553 ORTHO05D006866 7.7e-197 691.0 584 63.2
Migut.N00626 Erythranthe guttata HOM05D005553 ORTHO05D006866 7.7e-197 691.0 612 59.3
Lj2A1127T50 Lonicera japonica HOM05D005553 ORTHO05D006866 7.7e-197 691.0 582 63.9
Sc05g0002010 Simmondsia chinensis HOM05D005553 ORTHO05D006866 2.9e-196 689.1 590 62.2
Sed0021986 Sechium edule HOM05D005553 ORTHO05D006866 5.0e-196 688.3 574 62.7
PSO782G3165 Papaver somniferum HOM05D005553 ORTHO05D006866 8.5e-196 687.6 587 59.8
Lsat_1_v5_gn_9_13060 Lactuca sativa HOM05D005553 ORTHO05D006866 1.1e-195 687.2 582 61.2
ECA247G0750 Erigeron canadensis HOM05D005553 ORTHO05D006866 8.8e-193 677.6 564 63.7
Aa31LG5G17740 Aethionema arabicum HOM05D005553 ORTHO05D006866 1.5e-192 676.8 589 62.3
Haze_24838 Corylus avellana HOM05D005553 ORTHO05D006866 2.6e-192 676.0 608 62.3
Rhsim01G0254300 Rhododendron simsii HOM05D005553 ORTHO05D006866 1.8e-190 669.8 525 67.2
Nitab4.5_0000345g0010 Nicotiana tabacum HOM05D005553 ORTHO05D006866 2.0e-189 666.4 681 54.6
EL10Ac7g17878 Beta vulgaris HOM05D005553 ORTHO05D006866 4.0e-185 652.1 582 59.8
PSO339G3667 Papaver somniferum HOM05D005553 ORTHO05D006866 1.2e-184 650.6 555 60.9
Peaxi162Scf00238g00217 Petunia axillaris HOM05D005553 ORTHO05D006866 3.7e-183 645.6 558 61.3
DCAR_023559 Daucus carota HOM05D005553 ORTHO05D006866 3.5e-181 639.0 547 62.9
MELO3C020015.2 Cucumis melo HOM05D005553 ORTHO05D006866 7.7e-181 637.9 562 59.1
ClCG09G008830 Citrullus lanatus HOM05D005553 ORTHO05D006866 1.0e-180 637.5 616 56.7
Actinidia09473 Actinidia chinensis HOM05D005553 ORTHO05D006866 1.3e-180 637.1 588 59.2
MBI06_g04543_MAGBIO Magnolia biondii HOM05D005553 ORTHO05D006866 1.3e-180 637.1 588 59.0
Actinidia23714 Actinidia chinensis HOM05D005553 ORTHO05D006866 8.0e-178 627.9 430 74.2
Duzib211G0174 Durio zibethinus HOM05D005553 ORTHO05D006866 3.7e-175 619.0 503 68.0
arahy.Tifrunner.gnm1.ann1.84RPTF Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-174 617.5 572 57.9
arahy.Tifrunner.gnm1.ann1.62F6YN Arachis hypogaea HOM05D005553 ORTHO05D006866 3.3e-171 605.9 577 57.5
AUR62001118 Chenopodium quinoa HOM05D005553 ORTHO05D006866 5.2e-169 598.6 583 56.9
CDE08G1475 Ceratophyllum demersum HOM05D005553 ORTHO05D006866 8.9e-169 597.8 582 54.6
TPR.G6452 Trifolium pratense HOM05D005553 ORTHO05D006866 9.2e-166 587.8 549 59.6
Potri.002G244801 Populus trichocarpa HOM05D005553 ORTHO05D006866 7.8e-165 584.7 344 83.7
Os01g0907300 Oryza sativa ssp. japonica HOM05D005553 ORTHO05D006866 2.8e-162 576.2 579 54.1
ATR0609G062 Amborella trichopoda HOM05D005553 ORTHO05D006866 2.3e-161 573.2 585 53.3
Zm00001eb365330 Zea mays HOM05D005553 ORTHO05D006866 1.2e-157 560.8 582 52.9
TAR365G1156 Trochodendron aralioides HOM05D005553 ORTHO05D006866 8.1e-154 548.1 425 66.4
AUR62016558 Chenopodium quinoa HOM05D005553 ORTHO05D006866 5.4e-150 535.4 583 53.0
arahy.Tifrunner.gnm1.ann1.B0WXN9 Arachis hypogaea HOM05D005553 ORTHO05D006866 2.1e-141 506.9 591 49.1
DCAR_000631 Daucus carota HOM05D005553 ORTHO05D006866 7.8e-141 505.0 547 54.1
SHI14561 Sapria himalayana HOM05D005553 ORTHO05D006866 5.1e-140 502.3 549 51.4
SalBow3G3653 Salvia bowleyana HOM05D005553 ORTHO05D006866 1.2e-136 491.1 473 56.0
Dinv19184 Davidia involucrata HOM05D005553 ORTHO05D006866 1.8e-124 450.7 409 59.7
QL05p022419 Quercus lobata HOM05D005553 ORTHO05D006866 5.1e-116 422.5 237 87.8
Pp3c13_19160 Physcomitrium patens HOM05D005553 ORTHO05D006866 1.1e-113 414.8 586 42.7
unitig_0.g372 Utricularia gibba HOM05D005553 ORTHO05D006866 1.2e-101 374.8 491 45.8
Mapoly0045s0104 Marchantia polymorpha HOM05D005553 ORTHO05D006866 1.1e-99 368.2 612 36.8
QL02p097148 Quercus lobata HOM05D005553 ORTHO05D006866 5.9e-96 355.9 319 62.1
SMO353G0187 Selaginella moellendorffii HOM05D005553 ORTHO05D006866 8.5e-95 352.1 569 37.1
arahy.Tifrunner.gnm1.ann1.ET68I8 Arachis hypogaea HOM05D005553 ORTHO05D006866 3.3e-91 340.1 261 65.1
AagrBONN_evm.TU.Sc2ySwM_117.1632 Anthoceros agrestis HOM05D005553 ORTHO05D006866 5.7e-91 339.3 572 37.8
arahy.Tifrunner.gnm1.ann1.SPK719 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.1e-83 315.1 284 57.7
arahy.Tifrunner.gnm1.ann1.YI9T1V Arachis hypogaea HOM05D005553 ORTHO05D006866 1.3e-79 301.6 298 54.7
HPP92_001419 Vanilla planifolia HOM05D005553 ORTHO05D008496 2.8e-74 283.9 237 62.0
CBR_g46590 Chara braunii HOM05D005553 ORTHO05D006866 4.4e-67 260.0 439 34.9
arahy.Tifrunner.gnm1.ann1.3A36EA Arachis hypogaea HOM05D005553 ORTHO05D006866 4.2e-62 243.4 186 67.2
arahy.Tifrunner.gnm1.ann1.DF0SS3 Arachis hypogaea HOM05D005553 ORTHO05D006866 1.8e-60 238.0 259 52.1
HPP92_001410 Vanilla planifolia HOM05D005553 ORTHO05D006866 1.4e-57 228.4 180 61.7
EL10Ac7g17877 Beta vulgaris HOM05D005553 ORTHO05D006866 6.2e-37 159.8 204 48.0
SEGI_34191 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 2.4e-33 147.9 147 50.3
Cfa026900 Carpinus fangiana HOM05D005553 ORTHO05D006866 1.2e-24 119.0 327 28.4
SEGI_35984 Sequoiadendron giganteum HOM05D005553 ORTHO05D006866 1.7e-23 115.2 268 32.8
unitig_0.g371 Utricularia gibba HOM05D005553 ORTHO05D006866 6.6e-23 113.2 74 75.7
A05p41020 Brassica napus HOM05D005553 ORTHO05D006866 1.9e-22 111.7 223 38.6
Cre01.g013400 Chlamydomonas reinhardtii HOM05D005553 ORTHO05D006866 9.6e-22 109.4 419 25.1
TPR.G39542 Trifolium pratense HOM05D005553 ORTHO05D006866 1.6e-16 92.0 49 81.6
arahy.Tifrunner.gnm1.ann1.UUY44J Arachis hypogaea HOM05D005553 ORTHO05D006866 1.5e-14 85.5 132 43.2
MCO09G019 Micromonas commoda HOM05D005553 ORTHO05D006866 1.3e-13 82.4 149 34.9
TAR365G0595 Trochodendron aralioides HOM05D005553 ORTHO05D006866 2.0e-11 75.1 65 58.5
VMungo1383G0327 Vigna mungo HOM05D005553 ORTHO05D006866 3.8e-10 70.9 78 51.3


User provided reference genes

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