Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 0.0e+00 1354.0 671 100.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 0.0e+00 1329.3 671 98.1
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 0.0e+00 1086.6 676 80.5
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 0.0e+00 1086.6 676 80.8
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 4.6e-312 1074.7 676 79.7
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.2e-287 991.5 658 74.2
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 1.2e-283 979.5 667 72.4
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 4.4e-281 971.1 637 73.8
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 7.5e-281 970.3 643 74.0
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 1.6e-278 962.6 674 70.5
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 6.6e-277 957.2 672 70.2
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.5e-276 955.3 635 73.4
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 7.3e-276 953.7 674 69.4
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.2e-275 953.0 671 70.0
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.6e-275 952.6 660 72.3
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.6e-275 952.6 646 72.3
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 2.1e-275 952.2 662 70.7
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 8.1e-275 950.3 664 70.0
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 2.7e-270 935.3 674 68.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 2.7e-270 935.3 676 69.7
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.6e-268 927.5 664 69.0
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.7e-267 924.5 656 69.5
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 9.0e-266 920.2 656 69.4
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 9.0e-266 920.2 639 70.7
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 7.6e-265 917.1 644 70.7
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 3.8e-264 914.8 656 69.1
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 3.8e-264 914.8 674 68.2
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.9e-264 914.4 681 67.1
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 2.7e-262 908.7 667 69.0
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 7.8e-262 907.1 671 69.9
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 5.1e-261 904.4 637 69.9
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 6.6e-261 904.0 640 69.7
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 8.7e-261 903.7 672 67.3
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 3.3e-260 901.7 647 69.4
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 4.3e-260 901.4 637 69.4
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.6e-260 901.0 634 69.7
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 6.2e-259 897.5 688 66.3
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.1e-258 896.7 688 66.0
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 1.8e-258 896.0 676 66.4
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 3.1e-258 895.2 646 68.7
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 4.0e-258 894.8 667 67.2
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 9.0e-258 893.6 668 66.8
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 3.4e-257 891.7 641 68.6
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.3e-256 889.8 642 69.0
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 4.9e-256 887.9 663 68.3
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.9e-255 885.9 655 67.9
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 5.4e-255 884.4 671 66.9
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.2e-254 883.2 671 66.5
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 1.2e-254 883.2 664 67.5
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 7.9e-254 880.6 672 66.7
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 2.3e-253 879.0 668 66.3
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 1.5e-252 876.3 658 66.0
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 1.1e-250 870.2 668 65.0
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.8e-250 869.4 667 64.8
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 2.4e-250 869.0 666 65.8
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 2.0e-249 865.9 580 72.8
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 4.9e-248 861.3 640 67.5
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 9.3e-247 857.1 588 70.1
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 3.5e-246 855.1 661 64.3
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.8e-245 852.8 653 66.5
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 6.7e-245 850.9 665 65.0
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.1e-244 850.1 658 63.8
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.3e-244 848.2 661 65.5
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.6e-243 846.3 658 64.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.1e-243 845.9 662 65.6
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 8.2e-243 844.0 666 64.6
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 1.1e-242 843.6 665 64.8
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.4e-242 843.2 667 64.6
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 2.0e-241 839.3 667 63.9
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 2.6e-241 839.0 659 64.5
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 3.4e-241 838.6 661 64.8
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.0e-240 837.0 664 65.1
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.3e-240 836.6 670 64.8
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.7e-240 836.3 670 64.6
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 1.1e-239 833.6 638 65.5
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 3.2e-239 832.0 652 65.2
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 3.2e-239 832.0 582 70.3
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 2.5e-236 822.4 659 62.7
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.3e-235 820.1 647 65.2
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.8e-235 818.1 580 69.0
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 1.8e-234 816.2 658 62.9
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 1.8e-234 816.2 671 62.4
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 3.1e-234 815.5 665 63.6
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 1.5e-233 813.1 669 63.2
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 4.5e-233 811.6 626 65.3
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 7.6e-233 810.8 667 62.5
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 2.5e-231 805.8 663 63.2
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 3.6e-230 802.0 663 62.7
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.4e-229 800.0 660 62.9
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.1e-228 797.0 663 62.4
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.5e-228 795.8 663 62.3
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 3.1e-226 788.9 663 62.1
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 3.1e-226 788.9 605 65.3
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.3e-224 783.5 636 62.1
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 5.0e-224 781.6 674 60.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 3.0e-221 772.3 662 58.9
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 4.8e-219 765.0 699 57.9
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 8.5e-216 754.2 561 66.7
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 5.5e-215 751.5 647 58.0
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.1e-207 727.2 605 60.8
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 3.5e-193 679.1 549 61.2
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 1.5e-180 637.1 492 63.2
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.9e-175 620.2 574 55.4
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 1.4e-170 604.0 393 78.4
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 6.2e-166 588.6 674 47.5
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 1.8e-165 587.0 506 60.5
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.6e-156 556.6 579 52.7
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.3e-152 543.5 578 52.2
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.7e-144 517.3 391 67.8
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 4.3e-143 512.7 429 57.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 1.9e-138 497.3 669 44.4
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.2e-130 469.9 528 46.8
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 3.4e-124 449.9 842 36.8
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.5e-122 443.7 643 41.1
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 2.4e-109 400.6 226 86.3
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 5.5e-106 389.4 570 40.4
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 6.7e-96 355.9 205 79.5
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 2.5e-90 337.4 282 60.3
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 6.5e-83 312.8 324 53.1
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 8.6e-75 285.8 219 65.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 9.8e-71 272.3 213 60.6
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.8e-69 268.1 402 44.3
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 3.5e-68 263.8 607 32.9
QL09p053457 Quercus lobata HOM05D005051 ORTHO05D005945 9.2e-61 239.2 171 75.4
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.1e-57 228.0 670 29.7
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 2.3e-56 224.6 709 29.9
HPP92_008216 Vanilla planifolia HOM05D005051 ORTHO05D005945 1.3e-54 218.8 172 67.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 2.2e-54 218.0 654 30.1
Nitab4.5_0000345g0090 Nicotiana tabacum HOM05D005051 ORTHO05D000055 1.9e-53 214.9 145 75.9
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 1.4e-45 188.7 145 62.1
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-45 188.3 237 47.3
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.9e-45 188.3 237 47.3
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 7.8e-44 183.0 121 74.4
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 6.6e-35 153.3 310 36.5
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 2.5e-34 151.4 140 57.9
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 3.6e-33 147.5 111 62.2
SMO259G0028 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.4e-32 144.8 179 42.5
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-29 136.0 231 39.8
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 1.1e-29 136.0 106 71.7
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.2e-29 134.4 231 39.4
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.2e-29 134.4 231 39.4
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.2e-29 134.4 231 39.4
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.2e-29 134.4 231 39.4
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 2.7e-28 131.3 186 44.1
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 2.8e-25 121.3 131 48.1
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.1e-24 117.9 164 44.5
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.9e-24 116.7 127 51.2
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.2e-23 115.9 127 51.2
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.5e-23 115.5 127 50.4
Glyma.13G258901 Glycine max HOM05D005051 ORTHO05D005945 2.7e-20 104.8 60 90.0
Glyma.13G368066 Glycine max HOM05D005051 ORTHO05D005945 2.3e-19 101.7 60 88.3
Hund18406 Selenicereus undatus HOM05D005051 ORTHO05D005945 5.7e-10 70.5 50 62.0
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.8e-08 65.5 40 70.0
Lsat_1_v5_gn_5_150541 Lactuca sativa HOM05D005051 ORTHO05D048368 2.4e-08 65.1 71 46.5
Lsat_1_v5_gn_5_28021 Lactuca sativa HOM05D001978 ORTHO05D048368 9.0e-08 63.2 71 45.1


User provided reference genes

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