Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p051989 Quercus lobata HOM05D000285 ORTHO05D005099 2.0e-52 208.8 101 100.0
QL09p052051 Quercus lobata HOM05D000285 ORTHO05D005099 4.1e-37 157.9 89 86.5
QL09p051931 Quercus lobata HOM05D000285 ORTHO05D005099 6.9e-37 157.1 89 85.4
QL11p046249 Quercus lobata HOM05D000285 ORTHO05D005099 9.0e-37 156.8 90 83.3
TAR381G1123 Trochodendron aralioides HOM05D000285 ORTHO05D005099 6.5e-27 124.0 89 66.3
Nn5g27350 Nelumbo nucifera HOM05D000285 ORTHO05D005099 3.9e-24 114.8 89 58.4
Dinv22130 Davidia involucrata HOM05D000285 ORTHO05D005099 1.1e-23 113.2 89 61.8
MBI03_g20876_MAGBIO Magnolia biondii HOM05D000285 ORTHO05D005099 2.5e-18 95.5 73 57.5
ATR1089G137 Amborella trichopoda HOM05D000285 ORTHO05D005099 3.6e-17 91.7 69 60.9
Ciclev10025943m.g Citrus clementina HOM05D000285 ORTHO05D005099 1.1e-10 70.1 66 43.9
Mapoly0158s0019 Marchantia polymorpha HOM05D000285 ORTHO05D005099 1.9e-10 69.3 66 45.5
AagrBONN_evm.TU.Sc2ySwM_228.102 Anthoceros agrestis HOM05D000285 ORTHO05D005099 2.5e-10 68.9 66 43.9
Manes.12G099600 Manihot esculenta HOM05D000285 ORTHO05D005099 2.5e-10 68.9 66 42.4
Cpa.g.sc55.144 Carica papaya HOM05D000285 ORTHO05D005099 3.2e-10 68.6 66 43.9
CSS0045855 Camellia sinensis var. sinensis HOM05D000285 ORTHO05D005099 4.2e-10 68.2 66 43.9
Duzib187G1459 Durio zibethinus HOM05D000285 ORTHO05D005099 4.2e-10 68.2 66 43.9
Gohir.D11G199400 Gossypium hirsutum HOM05D000285 ORTHO05D005099 4.2e-10 68.2 66 42.4
Gorai.007G213600 Gossypium raimondii HOM05D000285 ORTHO05D005099 4.2e-10 68.2 66 42.4
Mapoly0059s0021 Marchantia polymorpha HOM05D000285 ORTHO05D005099 5.5e-10 67.8 86 41.9
Atru.chr3.322 Acer truncatum HOM05D000285 ORTHO05D005099 7.2e-10 67.4 66 42.4
EL10Ac6g15740 Beta vulgaris HOM05D000285 ORTHO05D005099 7.2e-10 67.4 66 42.4
HanXRQChr12g0378861 Helianthus annuus HOM05D000285 ORTHO05D005099 7.2e-10 67.4 66 42.4
Lj2g0002373 Lotus japonicus HOM05D000285 ORTHO05D005099 7.2e-10 67.4 65 43.1
Actinidia12050 Actinidia chinensis HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
Actinidia16480 Actinidia chinensis HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
Actinidia36489 Actinidia chinensis HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
CSS0036925 Camellia sinensis var. sinensis HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
Ca_22160_v3 Cicer arietinum L. HOM05D000285 ORTHO05D005099 1.2e-09 66.6 65 41.5
ECA246G0492 Erigeron canadensis HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 40.9
Lj7A70T82 Lonicera japonica HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 40.9
PGR102G1302 Punica granatum HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
QL06p041296 Quercus lobata HOM05D000285 ORTHO05D005099 1.2e-09 66.6 66 42.4
AUR62001924 Chenopodium quinoa HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 40.9
AUR62003886 Chenopodium quinoa HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 40.9
Gohir.A11G192700 Gossypium hirsutum HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 42.4
Nitab4.5_0003298g0020 Nicotiana tabacum HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 42.4
Nitab4.5_0008512g0020 Nicotiana tabacum HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 42.4
SMO367G0068 Selaginella moellendorffii HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 40.9
Solyc02g090910.3 Solanum lycopersicum HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 43.9
Sopen02g035560 Solanum pennellii HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 43.9
PGSC0003DMG401004019 Solanum tuberosum HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 43.9
TWI73G0782 Tripterygium wilfordii HOM05D000285 ORTHO05D005099 1.6e-09 66.2 61 44.3
unitig_736.g22666 Utricularia gibba HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 42.4
vmacro05342 Vaccinium macrocarpon HOM05D000285 ORTHO05D005099 1.6e-09 66.2 66 42.4
ATR0104G012 Amborella trichopoda HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 42.4
Aqoxy6G01305 Aquilegia oxysepala HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 42.4
Duzib264G0729 Durio zibethinus HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 40.9
Migut.H00429 Erythranthe guttata HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 42.4
Gohir.D12G069700 Gossypium hirsutum HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 40.9
THA.LOC104807586 Tarenaya hassleriana HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 40.9
vmacro17956 Vaccinium macrocarpon HOM05D000285 ORTHO05D005099 2.1e-09 65.9 70 40.0
Zm00001eb141420 Zea mays HOM05D000285 ORTHO05D005099 2.1e-09 65.9 66 42.4
Eucgr.I00920 Eucalyptus grandis HOM05D000285 ORTHO05D005099 2.7e-09 65.5 66 40.9
Gohir.A12G071600 Gossypium hirsutum HOM05D000285 ORTHO05D005099 2.7e-09 65.5 66 42.4
Gorai.008G076700 Gossypium raimondii HOM05D000285 ORTHO05D005099 2.7e-09 65.5 66 42.4
PSO541G5519 Papaver somniferum HOM05D000285 ORTHO05D005099 2.7e-09 65.5 66 40.9
PSO675G1732 Papaver somniferum HOM05D000285 ORTHO05D005099 2.7e-09 65.5 66 40.9
ClCG02G012740 Citrullus lanatus HOM05D000285 ORTHO05D005099 3.6e-09 65.1 66 40.9
MELO3C020894.2 Cucumis melo HOM05D000285 ORTHO05D005099 3.6e-09 65.1 66 40.9
CsaV3_2G016830 Cucumis sativus L. HOM05D000285 ORTHO05D005099 3.6e-09 65.1 66 40.9
Peaxi162Scf00450g00320 Petunia axillaris HOM05D000285 ORTHO05D005099 3.6e-09 65.1 66 42.4
Pp3c3_17370 Physcomitrium patens HOM05D000285 ORTHO05D005099 3.6e-09 65.1 86 38.4
SEGI_18865 Sequoiadendron giganteum HOM05D000285 ORTHO05D005099 3.6e-09 65.1 66 42.4
Dinv39842 Davidia involucrata HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 39.4
Lj4g0013369 Lotus japonicus HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 37.9
MBI03_g13480_MAGBIO Magnolia biondii HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 40.9
Pp3c13_13860 Physcomitrium patens HOM05D000285 ORTHO05D005099 4.7e-09 64.7 77 41.6
Potri.007G044400 Populus trichocarpa HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 39.4
Sabra07G0039300 Salix brachista HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 39.4
TAR625G0268 Trochodendron aralioides HOM05D000285 ORTHO05D005099 4.7e-09 64.7 66 40.9
Lsat_1_v5_gn_3_90660 Lactuca sativa HOM05D002562 ORTHO05D005099 6.1e-09 64.3 66 39.4
Lalb_Chr00c02g0404081 Lupinus albus HOM05D000285 ORTHO05D005099 6.1e-09 64.3 66 40.9
Manes.13G123900 Manihot esculenta HOM05D000285 ORTHO05D005099 6.1e-09 64.3 66 40.9
Sed0017310 Sechium edule HOM05D000285 ORTHO05D005099 6.1e-09 64.3 66 40.9
MD02G1172600 Malus domestica HOM05D000285 ORTHO05D005099 8.0e-09 63.9 66 40.9
MD15G1284600 Malus domestica HOM05D000285 ORTHO05D005099 8.0e-09 63.9 66 40.9
Potri.005G138600 Populus trichocarpa HOM05D000285 ORTHO05D005099 8.0e-09 63.9 66 37.9
SGA_v2.0_scaffold15G07312 Striga asiatica HOM05D000899 ORTHO05D005099 8.0e-09 63.9 66 39.4
TWI09G1528 Tripterygium wilfordii HOM05D000285 ORTHO05D005099 8.0e-09 63.9 65 41.5
Zm00001eb363160 Zea mays HOM05D000285 ORTHO05D005099 8.0e-09 63.9 66 39.4
MSTRG.23743 Avicennia marina HOM05D000285 ORTHO05D005099 1.0e-08 63.5 66 39.4
CBR_g41687 Chara braunii HOM05D000285 ORTHO05D005099 1.0e-08 63.5 74 37.8
CBR_g55034 Chara braunii HOM05D000285 ORTHO05D005099 1.0e-08 63.5 74 39.2
DCAR_025736 Daucus carota HOM05D000285 ORTHO05D005099 1.0e-08 63.5 65 38.5
Hma1.2p1_0017F.1_g011430 Hydrangea macrophylla HOM05D000285 ORTHO05D005099 1.0e-08 63.5 66 39.4
Oeu031958.1 Olea europaea HOM05D000285 ORTHO05D005099 1.0e-08 63.5 66 39.4
GSVIVG01022126001 Vitis vinifera HOM05D000285 ORTHO05D005099 1.0e-08 63.5 66 39.4
arahy.Tifrunner.gnm1.ann1.E12FQJ Arachis hypogaea HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
arahy.Tifrunner.gnm1.ann1.KQW02R Arachis hypogaea HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
Cc07_g06030 Coffea canephora HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
Haze_15393 Corylus avellana HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
Dinv29988 Davidia involucrata HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
Glyma.11G055500 Glycine max HOM05D000285 ORTHO05D005099 1.4e-08 63.2 65 40.0
Lj4C150T3 Lonicera japonica HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
Psat4g086680 Pisum sativum HOM05D000285 ORTHO05D005099 1.4e-08 63.2 65 41.5
Thecc.01G056700 Theobroma cacao HOM05D000285 ORTHO05D005099 1.4e-08 63.2 66 39.4
arahy.Tifrunner.gnm1.ann1.H8SGQ8 Arachis hypogaea HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 39.4
arahy.Tifrunner.gnm1.ann1.I4NG9B Arachis hypogaea HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 37.9
CANSAT01G2142 Cannabis sativa HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 36.4
CiPaw.01G017700 Carya illinoinensis HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 39.4
Eucgr.H01665 Eucalyptus grandis HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 39.4
Lalb_Chr05g0226571 Lupinus albus HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 40.9
Oeu014840.1 Olea europaea HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 39.4
Prupe.7G132900 Prunus persica HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 39.4
Hund13549 Selenicereus undatus HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 37.9
Hund16317 Selenicereus undatus HOM05D000285 ORTHO05D005099 1.8e-08 62.8 66 37.9
Aa31LG6G14010 Aethionema arabicum HOM05D000285 ORTHO05D005099 2.3e-08 62.4 66 37.9
CDE08G1600 Ceratophyllum demersum HOM05D000285 ORTHO05D005099 3.0e-08 62.0 66 39.4
Glyma.01G186400 Glycine max HOM05D000285 ORTHO05D005099 3.0e-08 62.0 65 40.0
Rhsim08G0100200 Rhododendron simsii HOM05D000285 ORTHO05D005099 3.0e-08 62.0 65 40.0
CDE06G2167 Ceratophyllum demersum HOM05D000285 ORTHO05D005099 4.0e-08 61.6 66 39.4
Sc03g0001610 Simmondsia chinensis HOM05D000285 ORTHO05D005099 5.2e-08 61.2 65 36.9
RcHm_v2.0_Chr2g0105721 Rosa chinensis HOM05D000285 ORTHO05D005099 6.7e-08 60.8 65 38.5
Ca_24766_v3 Cicer arietinum L. HOM05D000899 ORTHO05D005099 8.8e-08 60.5 65 38.5
FAN23G1456 Fragaria x ananassa HOM05D000285 ORTHO05D005099 8.8e-08 60.5 65 36.9
AT4G36960 Arabidopsis thaliana HOM05D000285 ORTHO05D005099 1.1e-07 60.1 66 36.4
COL.COLO4_11423 Corchorus olitorius HOM05D000285 ORTHO05D005099 1.1e-07 60.1 53 45.3
HanXRQChr16g0504681 Helianthus annuus HOM05D000285 ORTHO05D005099 1.1e-07 60.1 66 36.4
Os01g0945800 Oryza sativa ssp. japonica HOM05D000285 ORTHO05D005099 1.5e-07 59.7 65 36.9
CDE04G1611 Ceratophyllum demersum HOM05D000285 ORTHO05D005099 2.0e-07 59.3 66 37.9
AL7G13730 Arabidopsis lyrata HOM05D000285 ORTHO05D005099 2.6e-07 58.9 66 36.4
Carub.0007s0315 Capsella rubella HOM05D000285 ORTHO05D005099 2.6e-07 58.9 66 36.4
CARHR245540 Cardamine hirsuta HOM05D000285 ORTHO05D005099 2.6e-07 58.9 66 36.4
FvH4_1g16100 Fragaria vesca HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
FAN19G1087 Fragaria x ananassa HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
FAN26G0644 Fragaria x ananassa HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
FAN28G2221 Fragaria x ananassa HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
Phvul.002G018500 Phaseolus vulgaris HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
VMungo1215G3228 Vigna mungo HOM05D000285 ORTHO05D005099 2.6e-07 58.9 65 36.9
BcaNung05425 Brassica carinata HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
A03p64850 Brassica napus HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
C07p62210 Brassica napus HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
BolC7t46637H Brassica oleracea HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
BraA03t15548Z Brassica rapa HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
Thhalv10025462m.g Eutrema salsugineum HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
Sp7g34800 Schrenkiella parvula HOM05D000285 ORTHO05D005099 3.3e-07 58.5 66 36.4
Medtr5g017280 Medicago truncatula HOM05D000285 ORTHO05D005099 5.7e-07 57.8 65 38.5
Psat2g167480 Pisum sativum HOM05D000285 ORTHO05D005099 7.5e-07 57.4 65 36.9
TPR.G30698 Trifolium pratense HOM05D000285 ORTHO05D005099 9.7e-07 57.0 65 36.9
Nn1g04835 Nelumbo nucifera HOM05D000285 ORTHO05D005099 2.8e-06 55.5 73 35.6


User provided reference genes

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