Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p051094 Quercus lobata HOM05D003354 ORTHO05D003786 8.0e-67 256.9 126 100.0
Haze_00474 Corylus avellana HOM05D003354 ORTHO05D003786 4.0e-10 68.6 71 53.5
MD08G1166700 Malus domestica HOM05D003354 ORTHO05D003786 2.6e-09 65.9 54 61.1
QL09p035692 Quercus lobata HOM05D003354 ORTHO05D003786 5.8e-09 64.7 54 61.1
Cfa015992 Carpinus fangiana HOM05D003354 ORTHO05D003786 9.9e-09 63.9 59 59.3
TWI12G1480 Tripterygium wilfordii HOM05D003354 ORTHO05D003786 2.2e-08 62.8 54 59.3
CiPaw.05G224100 Carya illinoinensis HOM05D003354 ORTHO05D003786 2.9e-08 62.4 54 59.3
FAN27G3075 Fragaria x ananassa HOM05D003354 ORTHO05D003786 2.9e-08 62.4 54 59.3
Manes.02G161300 Manihot esculenta HOM05D003354 ORTHO05D003786 3.8e-08 62.0 54 59.3
CANSAT25G2477 Cannabis sativa HOM05D003354 ORTHO05D003786 4.9e-08 61.6 54 59.3
Lalb_Chr11g0065791 Lupinus albus HOM05D003354 ORTHO05D003786 4.9e-08 61.6 71 47.9
MD15G1352900 Malus domestica HOM05D003354 ORTHO05D003786 4.9e-08 61.6 54 57.4
PSO170G6269 Papaver somniferum HOM05D003354 ORTHO05D003786 4.9e-08 61.6 52 59.6
PSO782G3162 Papaver somniferum HOM05D003354 ORTHO05D003786 4.9e-08 61.6 52 59.6
Prupe.1G501200 Prunus persica HOM05D003354 ORTHO05D003786 4.9e-08 61.6 54 57.4
Nitab4.5_0001926g0040 Nicotiana tabacum HOM05D003354 ORTHO05D003786 6.4e-08 61.2 53 58.5
TWI56G0133 Tripterygium wilfordii HOM05D003354 ORTHO05D003786 6.4e-08 61.2 54 59.3
ClCG11G015620 Citrullus lanatus HOM05D003354 ORTHO05D003786 8.4e-08 60.8 71 45.1
FvH4_2g26570 Fragaria vesca HOM05D003354 ORTHO05D003786 8.4e-08 60.8 54 57.4
FAN15G1710 Fragaria x ananassa HOM05D003354 ORTHO05D003786 8.4e-08 60.8 54 57.4
FAN20G0128 Fragaria x ananassa HOM05D003354 ORTHO05D003786 8.4e-08 60.8 54 57.4
FAN24G3078 Fragaria x ananassa HOM05D003354 ORTHO05D003786 8.4e-08 60.8 54 57.4
RcHm_v2.0_Chr6g0295441 Rosa chinensis HOM05D003354 ORTHO05D003786 8.4e-08 60.8 54 57.4
Lj1g0025637 Lotus japonicus HOM05D003354 ORTHO05D003786 1.1e-07 60.5 54 57.4
Potri.005G175800 Populus trichocarpa HOM05D003354 ORTHO05D003786 1.4e-07 60.1 54 59.3
Cpa.g.sc36.34 Carica papaya HOM05D003354 ORTHO05D003786 1.9e-07 59.7 54 57.4
Aqoxy6G00175 Aquilegia oxysepala HOM05D003354 ORTHO05D003786 2.4e-07 59.3 54 55.6
Ca_13580_v3 Cicer arietinum L. HOM05D003354 ORTHO05D003786 2.4e-07 59.3 54 57.4
Nitab4.5_0000633g0150 Nicotiana tabacum HOM05D003354 ORTHO05D003786 2.4e-07 59.3 56 53.6
TWI36G0704 Tripterygium wilfordii HOM05D003354 ORTHO05D003786 2.4e-07 59.3 54 57.4
CSS0003863 Camellia sinensis var. sinensis HOM05D003354 ORTHO05D003786 3.2e-07 58.9 54 55.6
Glyma.04G251700 Glycine max HOM05D003354 ORTHO05D003786 3.2e-07 58.9 54 55.6
Glyma.06G111100 Glycine max HOM05D003354 ORTHO05D003786 3.2e-07 58.9 54 55.6
Os09g0453900 Oryza sativa ssp. japonica HOM05D003354 ORTHO05D003786 3.2e-07 58.9 54 55.6
GSVIVG01008898001 Vitis vinifera HOM05D003354 ORTHO05D003786 3.2e-07 58.9 52 57.7
MELO3C010462.2 Cucumis melo HOM05D003354 ORTHO05D003786 4.2e-07 58.5 59 49.2
CsaV3_4G028400 Cucumis sativus L. HOM05D003354 ORTHO05D003786 4.2e-07 58.5 59 49.2
Dinv27338 Davidia involucrata HOM05D003354 ORTHO05D003786 4.2e-07 58.5 54 51.9
Duzib093G1970 Durio zibethinus HOM05D003354 ORTHO05D003786 4.2e-07 58.5 54 57.4
Nitab4.5_0001035g0050 Nicotiana tabacum HOM05D003354 ORTHO05D003786 4.2e-07 58.5 53 56.6
Medtr5g058920 Medicago truncatula HOM05D003354 ORTHO05D003786 5.5e-07 58.2 71 43.7
PGR042G0694 Punica granatum HOM05D003354 ORTHO05D003786 5.5e-07 58.2 54 53.7
SalBow7G2783 Salvia bowleyana HOM05D003354 ORTHO05D003786 5.5e-07 58.2 54 53.7
unitig_0.g2122 Utricularia gibba HOM05D003354 ORTHO05D003786 5.5e-07 58.2 53 52.8
Actinidia23067 Actinidia chinensis HOM05D003354 ORTHO05D003786 7.1e-07 57.8 57 52.6
arahy.Tifrunner.gnm1.ann1.UWNN8R Arachis hypogaea HOM05D003354 ORTHO05D003786 7.1e-07 57.8 71 43.7
Cc10_g10980 Coffea canephora HOM05D003354 ORTHO05D003786 7.1e-07 57.8 54 53.7
Dinv40396 Davidia involucrata HOM05D003354 ORTHO05D003786 7.1e-07 57.8 54 55.6
TAR376G0801 Trochodendron aralioides HOM05D003354 ORTHO05D003786 7.1e-07 57.8 54 51.9
Actinidia02609 Actinidia chinensis HOM05D003354 ORTHO05D003786 9.3e-07 57.4 59 49.2
Peaxi162Scf00051g00625 Petunia axillaris HOM05D003354 ORTHO05D003786 9.3e-07 57.4 53 52.8
Phvul.009G123000 Phaseolus vulgaris HOM05D003354 ORTHO05D003786 9.3e-07 57.4 54 55.6
Sabra05G0132400 Salix brachista HOM05D003354 ORTHO05D003786 9.3e-07 57.4 59 54.2
CSS0003929 Camellia sinensis var. sinensis HOM05D003354 ORTHO05D003786 1.2e-06 57.0 53 54.7
MBI03_g33018_MAGBIO Magnolia biondii HOM05D003354 ORTHO05D003786 1.2e-06 57.0 54 51.9
Psat2g077720 Pisum sativum HOM05D003354 ORTHO05D003786 1.2e-06 57.0 54 55.6
TAR628G1291 Trochodendron aralioides HOM05D003354 ORTHO05D003786 1.2e-06 57.0 54 51.9
vmacro00817 Vaccinium macrocarpon HOM05D003354 ORTHO05D003786 1.2e-06 57.0 59 50.8
VMungo1309G0116 Vigna mungo HOM05D003354 ORTHO05D003786 1.2e-06 57.0 54 55.6
Gohir.A05G233600 Gossypium hirsutum HOM05D003354 ORTHO05D003786 1.6e-06 56.6 54 57.4
Gohir.D05G236000 Gossypium hirsutum HOM05D003354 ORTHO05D003786 1.6e-06 56.6 54 57.4
Gorai.009G244300 Gossypium raimondii HOM05D003354 ORTHO05D003786 1.6e-06 56.6 54 57.4
RhsimUnG0094600 Rhododendron simsii HOM05D003354 ORTHO05D003786 1.6e-06 56.6 58 51.7
Atru.chr13.1413 Acer truncatum HOM05D003354 ORTHO05D003786 2.1e-06 56.2 53 54.7
Migut.C01147 Erythranthe guttata HOM05D003354 ORTHO05D003786 2.1e-06 56.2 53 54.7
Migut.N03296 Erythranthe guttata HOM05D003354 ORTHO05D003786 2.1e-06 56.2 54 51.9
Lj1g0023829 Lotus japonicus HOM05D003354 ORTHO05D003786 2.1e-06 56.2 54 53.7
Sopen06g020550 Solanum pennellii HOM05D003354 ORTHO05D003786 2.1e-06 56.2 58 48.3
Thecc.08G121800 Theobroma cacao HOM05D003354 ORTHO05D003786 2.1e-06 56.2 54 55.6
arahy.Tifrunner.gnm1.ann1.2A8LJJ Arachis hypogaea HOM05D003354 ORTHO05D003786 3.5e-06 55.5 63 46.0
MSTRG.1458 Avicennia marina HOM05D003354 ORTHO05D003786 3.5e-06 55.5 54 53.7
A09p42810 Brassica napus HOM05D003354 ORTHO05D003786 3.5e-06 55.5 52 53.8
CSS0028880 Camellia sinensis var. sinensis HOM05D003354 ORTHO05D003786 3.5e-06 55.5 53 52.8
CAN.G513.4 Capsicum annuum HOM05D003354 ORTHO05D003786 3.5e-06 55.5 53 52.8
Medtr3g072650 Medicago truncatula HOM05D003354 ORTHO05D003786 3.5e-06 55.5 54 53.7
TPR.G22989 Trifolium pratense HOM05D003354 ORTHO05D003786 3.5e-06 55.5 54 53.7
Lalb_Chr00c21g0406201 Lupinus albus HOM05D003354 ORTHO05D003786 4.6e-06 55.1 71 42.3
Lalb_Chr04g0253371 Lupinus albus HOM05D003354 ORTHO05D003786 4.6e-06 55.1 71 42.3
BolC6t40185H Brassica oleracea HOM05D003354 ORTHO05D003786 6.0e-06 54.7 70 45.7
BolC6t40188H Brassica oleracea HOM05D003354 ORTHO05D003786 6.0e-06 54.7 70 45.7
Lalb_Chr08g0241541 Lupinus albus HOM05D003354 ORTHO05D003786 6.0e-06 54.7 54 51.9
Manes.18G075500 Manihot esculenta HOM05D003354 ORTHO05D003786 6.0e-06 54.7 54 57.4
Potri.002G085900 Populus trichocarpa HOM05D003354 ORTHO05D003786 6.0e-06 54.7 54 53.7
Solyc06g060410.3 Solanum lycopersicum HOM05D003354 ORTHO05D003786 6.0e-06 54.7 58 46.6
C06p51660 Brassica napus HOM05D003354 ORTHO05D003786 7.9e-06 54.3 50 56.0
Duzib041G0514 Durio zibethinus HOM05D003354 ORTHO05D003786 7.9e-06 54.3 54 51.9
Sabra02G0067300 Salix brachista HOM05D003354 ORTHO05D003786 7.9e-06 54.3 54 53.7


User provided reference genes

Program Settings