Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p050762 Quercus lobata HOM05D050371 ORTHO05D338231 2.1e-91 339.0 162 100.0
QL09p050560 Quercus lobata HOM05D050371 ORTHO05D337017 2.7e-14 82.8 57 75.4
Haze_04747 Corylus avellana HOM05D001484 ORTHO05D001564 2.1e-11 73.2 47 70.2
Glyma.03G151100 Glycine max HOM05D001484 ORTHO05D001564 3.6e-11 72.4 51 66.7
Ca_09571_v3 Cicer arietinum L. HOM05D001484 ORTHO05D001564 4.7e-11 72.0 47 72.3
QL12p022706 Quercus lobata HOM05D001484 ORTHO05D001564 4.7e-11 72.0 47 72.3
CiPaw.08G103100 Carya illinoinensis HOM05D001484 ORTHO05D001564 6.1e-11 71.6 47 70.2
Glyma.05G001600 Glycine max HOM05D001484 ORTHO05D001564 1.0e-10 70.9 47 72.3
Gohir.D08G054700 Gossypium hirsutum HOM05D001484 ORTHO05D001564 3.0e-10 69.3 47 68.1
Gohir.A08G045000 Gossypium hirsutum HOM05D001484 ORTHO05D001564 4.0e-10 68.9 47 68.1
Manes.01G210100 Manihot esculenta HOM05D001484 ORTHO05D001564 4.0e-10 68.9 47 70.2
Lj2g0015248 Lotus japonicus HOM05D001484 ORTHO05D001564 5.2e-10 68.6 47 72.3
Duzib138G1867 Durio zibethinus HOM05D001484 ORTHO05D001564 8.8e-10 67.8 47 68.1
Gorai.004G055200 Gossypium raimondii HOM05D001484 ORTHO05D001564 8.8e-10 67.8 47 66.0
Medtr2g105810 Medicago truncatula HOM05D001484 ORTHO05D001564 8.8e-10 67.8 47 70.2
Phvul.004G001700 Phaseolus vulgaris HOM05D001484 ORTHO05D001564 8.8e-10 67.8 47 70.2
Thecc.01G284000 Theobroma cacao HOM05D001484 ORTHO05D001564 8.8e-10 67.8 47 68.1
Lalb_Chr06g0176771 Lupinus albus HOM05D001484 ORTHO05D001564 1.2e-09 67.4 47 72.3
Manes.05G073300 Manihot esculenta HOM05D001484 ORTHO05D001564 1.2e-09 67.4 47 66.0
Phvul.001G148600 Phaseolus vulgaris HOM05D001484 ORTHO05D001564 1.2e-09 67.4 49 63.3
Cfa006103 Carpinus fangiana HOM05D001484 ORTHO05D001564 2.0e-09 66.6 47 63.8
Potri.002G215600 Populus trichocarpa HOM05D001484 ORTHO05D001564 2.0e-09 66.6 47 68.1
RcHm_v2.0_Chr6g0291641 Rosa chinensis HOM05D001484 ORTHO05D001564 2.0e-09 66.6 51 60.8
FvH4_2g23980 Fragaria vesca HOM05D001484 ORTHO05D001564 2.6e-09 66.2 51 60.8
FAN20G1787 Fragaria x ananassa HOM05D001484 ORTHO05D001564 2.6e-09 66.2 51 58.8
FAN24G1998 Fragaria x ananassa HOM05D001484 ORTHO05D001564 2.6e-09 66.2 51 60.8
FAN27G1317 Fragaria x ananassa HOM05D001484 ORTHO05D001564 2.6e-09 66.2 51 58.8
TPR.G25221 Trifolium pratense HOM05D001484 ORTHO05D001564 2.6e-09 66.2 47 68.1
VMungo0464G1349 Vigna mungo HOM05D001484 ORTHO05D001564 2.6e-09 66.2 47 68.1
Glyma.19G001500 Glycine max HOM05D001484 ORTHO05D001564 4.4e-09 65.5 47 68.1
Gohir.A11G120500 Gossypium hirsutum HOM05D001484 ORTHO05D001564 5.7e-09 65.1 47 66.0
Medtr7g094550 Medicago truncatula HOM05D001484 ORTHO05D001564 5.7e-09 65.1 51 62.7
arahy.Tifrunner.gnm1.ann1.GK6QJJ Arachis hypogaea HOM05D001484 ORTHO05D001564 7.5e-09 64.7 47 68.1
arahy.Tifrunner.gnm1.ann1.V5ENPK Arachis hypogaea HOM05D001484 ORTHO05D001564 7.5e-09 64.7 47 68.1
COL.COLO4_09143 Corchorus olitorius HOM05D001484 ORTHO05D001564 7.5e-09 64.7 47 61.7
Duzib211G0420 Durio zibethinus HOM05D001484 ORTHO05D001564 7.5e-09 64.7 47 63.8
VMungo1383G0239 Vigna mungo HOM05D001484 ORTHO05D001564 7.5e-09 64.7 47 63.8
Dinv32963 Davidia involucrata HOM05D001484 ORTHO05D001564 1.7e-08 63.5 47 66.0
TPR.G18130 Trifolium pratense HOM05D001484 ORTHO05D001564 1.7e-08 63.5 50 64.0
Gohir.D11G125600 Gossypium hirsutum HOM05D001484 ORTHO05D001564 2.2e-08 63.2 47 63.8
Gorai.007G134500 Gossypium raimondii HOM05D001484 ORTHO05D001564 2.2e-08 63.2 47 63.8
Duzib133G0974 Durio zibethinus HOM05D001484 ORTHO05D001564 3.7e-08 62.4 44 65.9
Lj1g0017101 Lotus japonicus HOM05D001484 ORTHO05D001564 3.7e-08 62.4 51 58.8
Lj2A1178G40 Lonicera japonica HOM05D001484 ORTHO05D001564 4.9e-08 62.0 47 66.0
FAN15G3626 Fragaria x ananassa HOM05D001484 ORTHO05D001564 6.3e-08 61.6 51 56.9
arahy.Tifrunner.gnm1.ann1.RT4QRX Arachis hypogaea HOM05D001484 ORTHO05D001564 8.3e-08 61.2 47 63.8
Ca_08567_v3 Cicer arietinum L. HOM05D001484 ORTHO05D001564 8.3e-08 61.2 51 56.9
Psat3g126120 Pisum sativum HOM05D001484 ORTHO05D001564 8.3e-08 61.2 51 56.9
Sabra02G0167900 Salix brachista HOM05D001484 ORTHO05D001564 8.3e-08 61.2 50 62.0
Nn1g02140 Nelumbo nucifera HOM05D001484 ORTHO05D001564 1.1e-07 60.8 47 66.0
MD11G1289800 Malus domestica HOM05D001484 ORTHO05D001564 1.4e-07 60.5 44 68.2
Oeu001433.1 Olea europaea HOM05D001484 ORTHO05D001564 1.4e-07 60.5 46 63.0
Prupe.8G245000 Prunus persica HOM05D001484 ORTHO05D001564 2.4e-07 59.7 44 65.9
GSVIVG01011094001 Vitis vinifera HOM05D001484 ORTHO05D001564 2.4e-07 59.7 47 63.8
PGR119G2145 Punica granatum HOM05D001484 ORTHO05D001564 3.1e-07 59.3 44 70.5
MBI17_g11997_MAGBIO Magnolia biondii HOM05D001484 ORTHO05D001564 4.1e-07 58.9 46 67.4
Oeu011171.1 Olea europaea HOM05D001484 ORTHO05D001564 4.1e-07 58.9 46 60.9
Ciclev10018517m.g Citrus clementina HOM05D001484 ORTHO05D001564 5.4e-07 58.5 47 57.4
MD03G1269000 Malus domestica HOM05D001484 ORTHO05D001564 5.4e-07 58.5 44 68.2
DCAR_012449 Daucus carota HOM05D001484 ORTHO05D001564 9.2e-07 57.8 50 60.0
Rhsim01G0276500 Rhododendron simsii HOM05D001484 ORTHO05D001564 9.2e-07 57.8 44 65.9
DCAR_018405 Daucus carota HOM05D001484 ORTHO05D001564 1.2e-06 57.4 45 64.4
CANSAT25G2179 Cannabis sativa HOM05D001484 ORTHO05D001564 1.6e-06 57.0 44 61.4
Potri.014G138400 Populus trichocarpa HOM05D001484 ORTHO05D001564 1.6e-06 57.0 47 57.4
Sed0026391 Sechium edule HOM05D001484 ORTHO05D001564 1.6e-06 57.0 42 66.7
ClCG07G000100 Citrullus lanatus HOM05D001484 ORTHO05D001564 2.0e-06 56.6 109 34.9
Lsat_1_v5_gn_5_187461 Lactuca sativa HOM05D001484 ORTHO05D001564 3.5e-06 55.8 45 53.3
unitig_749.g13744 Utricularia gibba HOM05D001484 ORTHO05D001564 3.5e-06 55.8 77 40.3
HanXRQChr11g0327651 Helianthus annuus HOM05D001484 ORTHO05D001564 4.5e-06 55.5 45 57.8
SalBow2G2440 Salvia bowleyana HOM05D001484 ORTHO05D001564 4.5e-06 55.5 56 55.4
Actinidia00731 Actinidia chinensis HOM05D001484 ORTHO05D001564 5.9e-06 55.1 44 61.4
Aqoxy2G03236 Aquilegia oxysepala HOM05D001484 ORTHO05D001564 5.9e-06 55.1 47 59.6
PSO170G2858 Papaver somniferum HOM05D001484 ORTHO05D001564 5.9e-06 55.1 46 63.0
PSO407G0334 Papaver somniferum HOM05D001484 ORTHO05D001564 5.9e-06 55.1 46 63.0
arahy.Tifrunner.gnm1.ann1.IDT7Z9 Arachis hypogaea HOM05D001484 ORTHO05D001564 7.7e-06 54.7 47 61.7
Gohir.D12G005700 Gossypium hirsutum HOM05D001484 ORTHO05D001564 7.7e-06 54.7 42 57.1
Gorai.008G005500 Gossypium raimondii HOM05D001484 ORTHO05D001564 7.7e-06 54.7 42 57.1
Rhsim13G0022400 Rhododendron simsii HOM05D001484 ORTHO05D001564 7.7e-06 54.7 44 63.6
HPP92_011325 Vanilla planifolia HOM05D001484 ORTHO05D001564 7.7e-06 54.7 46 58.7


User provided reference genes

Program Settings