Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 1.7e-304 1048.5 513 100.0
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 7.6e-241 837.0 509 82.3
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 1.3e-229 799.7 507 76.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 2.8e-227 792.0 507 75.9
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 1.0e-224 783.5 509 75.2
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.1e-223 780.0 511 76.3
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.4e-223 779.6 509 75.6
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.9e-223 779.2 508 75.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 5.5e-223 777.7 508 75.4
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.6e-222 775.0 508 75.2
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 5.1e-221 771.2 509 74.7
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-220 769.6 516 74.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 2.0e-220 769.2 508 75.2
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.2e-219 765.8 509 75.2
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.4e-218 763.1 509 73.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 9.1e-218 760.4 512 73.8
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.0e-216 756.9 511 74.6
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 2.2e-216 755.7 508 73.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.4e-215 753.1 508 73.4
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.9e-215 752.7 510 72.9
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.5e-215 751.1 508 72.2
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 4.7e-214 748.0 508 72.0
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 6.1e-214 747.7 508 71.9
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.9e-214 747.3 511 73.4
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 2.3e-213 745.7 510 73.3
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 6.7e-213 744.2 509 73.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 1.5e-212 743.0 506 71.7
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 4.4e-212 741.5 523 70.9
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 7.4e-212 740.7 509 72.7
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 4.8e-211 738.0 506 71.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 6.3e-211 737.6 510 72.4
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 3.1e-210 735.3 506 70.4
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-209 733.4 508 71.7
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.2e-209 733.4 508 71.7
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.5e-209 733.0 506 69.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 4.5e-209 731.5 506 70.6
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 7.7e-209 730.7 537 68.7
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.0e-208 730.3 507 71.2
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 1.3e-208 729.9 507 71.2
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.7e-208 729.6 592 64.5
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.2e-208 729.2 499 71.5
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 5.0e-208 728.0 506 70.8
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 6.5e-208 727.6 507 71.0
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 1.1e-207 726.9 510 71.6
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.2e-206 723.4 506 69.8
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.6e-206 721.8 571 64.6
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.8e-205 719.5 505 70.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 7.4e-204 714.1 506 69.4
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 2.2e-203 712.6 506 68.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.7e-203 711.8 510 68.8
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.5e-201 705.3 508 67.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 3.5e-201 705.3 510 68.4
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 7.7e-201 704.1 509 69.4
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 3.6e-198 695.3 509 67.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 4.7e-198 694.9 510 67.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 3.0e-197 692.2 517 67.3
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 9.8e-196 687.2 509 66.6
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.8e-194 682.9 510 67.5
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 3.1e-194 682.2 509 67.2
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 7.0e-194 681.0 508 66.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 7.0e-194 681.0 509 67.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 7.0e-194 681.0 509 67.0
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 9.1e-194 680.6 509 66.4
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 9.1e-194 680.6 509 67.0
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.2e-193 680.2 502 70.1
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 4.5e-193 678.3 518 66.2
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.9e-193 677.9 512 65.4
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.7e-193 677.6 508 67.3
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.3e-192 676.8 509 66.8
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.2e-192 676.0 507 66.3
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 2.9e-192 675.6 509 66.8
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 2.9e-192 675.6 509 66.8
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 2.9e-192 675.6 511 67.1
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 3.8e-192 675.2 546 62.6
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 5.0e-192 674.9 502 65.7
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.5e-191 673.3 513 66.3
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.9e-191 672.9 521 65.1
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 4.2e-191 671.8 507 65.9
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.2e-190 670.2 511 66.5
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.2e-190 670.2 511 65.8
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 1.6e-190 669.8 510 65.5
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 4.7e-190 668.3 461 70.3
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 1.0e-189 667.2 510 65.1
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.8e-189 666.4 508 64.4
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.2e-188 663.7 513 65.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 4.4e-188 661.8 432 73.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-186 656.0 439 73.8
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 9.1e-186 654.1 507 65.3
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.5e-185 652.1 550 62.0
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 5.9e-185 651.4 469 67.8
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 1.0e-184 650.6 508 64.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 2.9e-184 649.0 465 70.5
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.5e-183 646.7 509 64.4
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.5e-183 644.0 514 64.0
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.6e-182 643.3 509 64.2
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.1e-178 630.6 435 70.6
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 2.7e-177 625.9 437 71.2
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.0e-176 624.0 355 86.2
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.3e-176 623.6 510 61.2
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 2.6e-172 609.4 503 60.8
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 6.4e-171 604.7 460 64.6
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 1.4e-170 603.6 553 58.6
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 4.7e-166 588.6 378 76.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 6.2e-166 588.2 430 66.7
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.7e-163 580.1 461 64.0
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 1.6e-153 547.0 486 56.8
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-153 546.6 371 72.8
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-149 533.9 415 65.5
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 4.0e-149 532.3 509 55.8
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.0e-141 504.6 448 59.6
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 4.6e-129 465.7 384 61.5
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.8e-125 453.8 367 62.1
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.4e-122 444.1 451 51.4
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 3.3e-119 433.0 507 45.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 4.1e-117 426.0 391 59.6
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.1e-111 407.9 500 46.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-109 401.4 442 48.6
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-109 401.0 287 67.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-101 373.6 327 60.9
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 1.4e-80 304.7 392 47.4
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 2.0e-76 290.8 462 37.9
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 3.4e-71 273.5 240 59.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.4e-71 273.1 462 37.4
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 6.6e-67 259.2 448 39.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 1.3e-62 245.0 216 59.3
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.3e-56 224.2 494 32.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 6.8e-56 222.6 374 36.1
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.6e-55 220.7 158 72.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 3.2e-45 187.2 133 74.4
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 5.2e-40 169.9 246 41.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 1.9e-37 161.4 210 40.5
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.6e-36 156.8 101 74.3
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-34 149.8 108 71.3
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 9.6e-26 122.5 107 59.8
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.6e-23 114.4 348 26.7
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-16 92.0 64 70.3
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.5e-12 77.4 42 81.0
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.3e-11 75.5 49 75.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 5.1e-11 73.6 68 61.8
GSVIVG01038155001 Vitis vinifera HOM05D000263 ORTHO05D003675 3.4e-07 60.8 55 54.5
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 2.2e-06 58.2 431 21.3
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 6.5e-06 56.6 72 44.4


User provided reference genes

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