Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 6.0e-157 557.4 265 100.0
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 1.7e-111 406.4 226 86.7
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-110 403.7 226 86.3
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 7.0e-97 357.8 204 83.8
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 8.0e-93 344.4 226 73.9
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 1.0e-92 344.0 226 73.5
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 3.5e-88 328.9 226 71.7
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.6e-77 293.5 226 62.8
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.7e-77 292.0 226 62.8
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 1.8e-76 290.0 227 63.0
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 2.3e-76 289.7 226 61.5
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 2.0e-75 286.6 226 60.2
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 7.5e-75 284.6 226 60.2
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 7.5e-75 284.6 226 59.3
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 7.5e-75 284.6 226 59.3
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 1.3e-74 283.9 226 60.2
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 8.3e-74 281.2 226 59.3
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 1.1e-73 280.8 226 59.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 1.9e-73 280.0 226 58.8
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.2e-72 277.3 226 58.0
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.6e-72 276.9 226 58.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 3.5e-72 275.8 226 61.1
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 4.6e-72 275.4 226 58.0
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 6.0e-72 275.0 226 58.4
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 2.3e-71 273.1 226 57.5
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 3.0e-71 272.7 226 57.1
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 5.1e-71 271.9 226 58.8
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-70 270.8 226 54.4
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.5e-70 270.4 226 58.4
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 1.5e-70 270.4 226 58.4
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.9e-70 270.0 226 57.5
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.9e-70 270.0 226 57.5
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 4.3e-70 268.9 226 56.2
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 4.3e-70 268.9 226 54.0
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 4.3e-70 268.9 226 58.4
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 4.3e-70 268.9 226 58.0
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 5.6e-70 268.5 226 54.9
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 3.6e-69 265.8 226 55.3
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 8.1e-69 264.6 226 57.5
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 2.3e-68 263.1 226 57.1
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 3.1e-68 262.7 230 56.1
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 6.8e-68 261.5 226 56.2
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.4e-67 259.2 226 56.2
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 4.9e-66 255.4 226 55.8
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 4.9e-66 255.4 226 55.8
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 6.4e-66 255.0 226 55.3
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 3.2e-65 252.7 226 53.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 5.4e-65 251.9 230 53.9
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 7.1e-65 251.5 226 54.4
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 7.1e-65 251.5 220 59.1
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 1.6e-64 250.4 226 53.5
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 4.6e-64 248.8 230 56.1
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 7.8e-64 248.1 226 54.0
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 7.8e-64 248.1 226 54.4
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.0e-63 247.7 226 54.4
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 3.9e-63 245.7 226 52.7
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.1e-62 244.2 226 50.9
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 1.9e-62 243.4 226 54.4
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 9.5e-62 241.1 226 53.5
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 9.5e-62 241.1 227 54.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 9.5e-62 241.1 226 52.2
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 2.1e-61 240.0 226 52.2
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 3.6e-61 239.2 227 52.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 4.7e-61 238.8 228 51.3
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 4.7e-61 238.8 222 50.9
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 1.1e-60 237.7 226 50.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 1.4e-60 237.3 228 52.2
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 6.8e-60 235.0 233 52.8
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 6.8e-60 235.0 226 53.1
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 8.9e-60 234.6 226 49.1
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 1.2e-59 234.2 228 52.2
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 7.6e-59 231.5 227 52.0
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 1.3e-58 230.7 226 49.1
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.3e-58 230.7 226 50.9
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 2.7e-56 223.0 226 46.5
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 7.8e-56 221.5 226 49.1
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 7.8e-56 221.5 226 50.0
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 3.3e-54 216.1 230 50.4
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 9.6e-54 214.5 231 48.1
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 1.6e-53 213.8 226 47.8
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 2.8e-53 213.0 226 49.6
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 3.6e-53 212.6 226 47.3
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 3.6e-53 212.6 226 46.0
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.4e-52 209.9 226 47.3
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 4.0e-52 209.1 226 46.0
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 4.0e-52 209.1 226 46.5
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 4.0e-52 209.1 226 48.2
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 1.2e-51 207.6 226 50.4
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 1.2e-51 207.6 226 50.4
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 1.2e-51 207.6 226 49.1
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 2.0e-51 206.8 226 46.9
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 2.0e-51 206.8 243 44.9
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 1.7e-50 203.8 226 45.1
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.7e-50 203.8 226 45.6
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.9e-50 203.0 231 42.0
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 8.4e-50 201.4 227 47.1
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 2.4e-49 199.9 227 45.4
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 3.2e-49 199.5 226 44.2
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 4.2e-49 199.1 227 44.1
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 2.1e-48 196.8 227 43.6
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 2.7e-48 196.4 227 43.6
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 6.0e-48 195.3 227 44.1
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 6.0e-48 195.3 226 45.6
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 5.1e-47 192.2 226 47.3
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 6.6e-47 191.8 184 51.1
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 6.9e-44 181.8 235 40.4
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 1.5e-43 180.6 231 40.3
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.6e-43 179.9 222 42.3
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 7.6e-43 178.3 226 42.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 7.6e-43 178.3 226 41.2
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 4.2e-41 172.6 146 56.8
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 8.7e-39 164.9 235 37.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 3.0e-31 139.8 243 33.7
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 1.1e-28 131.3 116 51.7
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 1.9e-25 120.6 110 53.6
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.2e-25 119.8 229 33.2
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 5.5e-25 119.0 225 36.4
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 1.6e-24 117.5 244 32.0
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 2.1e-24 117.1 252 28.6
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.3e-23 114.4 186 39.8
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 3.3e-22 109.8 131 42.7
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 1.3e-21 107.8 110 51.8
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 2.6e-19 100.1 125 45.6
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 6.1e-16 89.0 195 31.3
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 5.0e-10 69.3 138 31.9
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 3.9e-07 59.7 127 28.3


User provided reference genes

Program Settings