Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p048378 Quercus lobata HOM05D007131 ORTHO05D009026 3.2e-89 331.6 160 100.0
QL09p048363 Quercus lobata HOM05D007131 ORTHO05D009026 6.0e-35 151.4 74 98.6
CiPaw.14G041500 Carya illinoinensis HOM05D007131 ORTHO05D009026 3.7e-24 115.5 70 77.1
Haze_03320 Corylus avellana HOM05D007131 ORTHO05D009026 1.8e-23 113.2 69 78.3
Cfa010368 Carpinus fangiana HOM05D007131 ORTHO05D009026 4.0e-23 112.1 69 76.8
QL09p048788 Quercus lobata HOM05D002652 ORTHO05D002739 4.0e-23 112.1 55 96.4
GSVIVG01002500001 Vitis vinifera HOM05D007131 ORTHO05D009026 2.6e-22 109.4 68 76.5
Ciclev10032761m.g Citrus clementina HOM05D007131 ORTHO05D009026 5.8e-22 108.2 151 43.0
RcHm_v2.0_Chr6g0283441 Rosa chinensis HOM05D007131 ORTHO05D009026 1.3e-21 107.1 80 67.5
MD10G1154300 Malus domestica HOM05D007131 ORTHO05D009026 2.9e-21 105.9 68 73.5
Dinv28824 Davidia involucrata HOM05D007131 ORTHO05D009026 4.9e-21 105.1 72 68.1
Migut.N00650 Erythranthe guttata HOM05D007131 ORTHO05D009026 6.4e-21 104.8 66 69.7
FvH4_2g18050 Fragaria vesca HOM05D007131 ORTHO05D009026 1.1e-20 104.0 80 65.0
FAN15G1265 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.4e-20 103.6 80 65.0
Actinidia23782 Actinidia chinensis HOM05D007131 ORTHO05D009026 1.9e-20 103.2 69 69.6
CANSAT01G0405 Cannabis sativa HOM05D007131 ORTHO05D009026 2.5e-20 102.8 74 70.3
Actinidia09448 Actinidia chinensis HOM05D007131 ORTHO05D009026 3.2e-20 102.4 69 68.1
Cc01_g16360 Coffea canephora HOM05D007131 ORTHO05D009026 4.2e-20 102.1 61 75.4
Potri.002G248800 Populus trichocarpa HOM05D007131 ORTHO05D009026 4.2e-20 102.1 65 73.8
QL11p046249 Quercus lobata HOM05D000285 ORTHO05D005099 4.2e-20 102.1 59 79.7
Prupe.8G193200 Prunus persica HOM05D007131 ORTHO05D009026 5.5e-20 101.7 69 69.6
QL09p052051 Quercus lobata HOM05D000285 ORTHO05D005099 5.5e-20 101.7 62 79.0
Hma1.2p1_1492F.1_g286770 Hydrangea macrophylla HOM05D007131 ORTHO05D009026 7.1e-20 101.3 61 75.4
Carub.0008s0817 Capsella rubella HOM05D007131 ORTHO05D009026 1.2e-19 100.5 61 75.4
Dinv22999 Davidia involucrata HOM05D007131 ORTHO05D009026 1.2e-19 100.5 69 68.1
Eucgr.H00746 Eucalyptus grandis HOM05D007131 ORTHO05D009026 1.6e-19 100.1 66 71.2
Sabra02G0189500 Salix brachista HOM05D007131 ORTHO05D009026 2.1e-19 99.8 65 70.8
Sc24g0003400 Simmondsia chinensis HOM05D007131 ORTHO05D009026 3.5e-19 99.0 66 68.2
Aa31sc517G10 Aethionema arabicum HOM05D007131 ORTHO05D009026 6.0e-19 98.2 61 73.8
AL8G21510 Arabidopsis lyrata HOM05D007131 ORTHO05D009026 6.0e-19 98.2 61 75.4
MSTRG.12759 Avicennia marina HOM05D007131 ORTHO05D009026 7.9e-19 97.8 66 65.2
A06p39100 Brassica napus HOM05D007131 ORTHO05D009026 7.9e-19 97.8 61 75.4
Nitab4.5_0000040g0390 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.0e-18 97.4 69 66.7
THA.LOC104802654 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 1.0e-18 97.4 62 75.8
EL10Ac7g17974 Beta vulgaris HOM05D007131 ORTHO05D009026 1.3e-18 97.1 66 71.2
MD05G1165000 Malus domestica HOM05D007131 ORTHO05D009026 1.3e-18 97.1 69 66.7
BcaB04g19580 Brassica carinata HOM05D007131 ORTHO05D009026 1.8e-18 96.7 61 75.4
BcaC04g23770 Brassica carinata HOM05D007131 ORTHO05D009026 1.8e-18 96.7 65 72.3
C09p04870 Brassica napus HOM05D007131 ORTHO05D009026 1.8e-18 96.7 65 72.3
HanXRQChr08g0231751 Helianthus annuus HOM05D007131 ORTHO05D009026 1.8e-18 96.7 62 69.4
ECA247G2839 Erigeron canadensis HOM05D004243 ORTHO05D005018 2.3e-18 96.3 62 69.4
THA.LOC104818990 Tarenaya hassleriana HOM05D007131 ORTHO05D009026 2.3e-18 96.3 65 72.3
Thecc.01G214300 Theobroma cacao HOM05D007131 ORTHO05D009026 2.3e-18 96.3 69 69.6
arahy.Tifrunner.gnm1.ann1.4977NQ Arachis hypogaea HOM05D007131 ORTHO05D009026 3.0e-18 95.9 61 72.1
BcaC06g30783 Brassica carinata HOM05D007131 ORTHO05D009026 3.0e-18 95.9 61 73.8
C07p39240 Brassica napus HOM05D007131 ORTHO05D009026 3.0e-18 95.9 61 73.8
BolC7t44444H Brassica oleracea HOM05D007131 ORTHO05D009026 3.0e-18 95.9 61 73.8
Sp2g18910 Schrenkiella parvula HOM05D007131 ORTHO05D009026 3.0e-18 95.9 61 73.8
SGA_v2.0_scaffold77G25283 Striga asiatica HOM05D007131 ORTHO05D009026 3.0e-18 95.9 62 74.2
Duzib138G1926 Durio zibethinus HOM05D007131 ORTHO05D009026 3.9e-18 95.5 70 67.1
Duzib211G0587 Durio zibethinus HOM05D007131 ORTHO05D009026 3.9e-18 95.5 61 75.4
Nn1g09828 Nelumbo nucifera HOM05D007131 ORTHO05D009026 5.1e-18 95.1 63 66.7
Sopen06g002490 Solanum pennellii HOM05D007131 ORTHO05D009026 5.1e-18 95.1 69 66.7
PGSC0003DMG400020651 Solanum tuberosum HOM05D007131 ORTHO05D009026 5.1e-18 95.1 69 66.7
CAN.G181.37 Capsicum annuum HOM05D007131 ORTHO05D009026 8.7e-18 94.4 66 71.2
vmacro14706 Vaccinium macrocarpon HOM05D007131 ORTHO05D009026 8.7e-18 94.4 69 62.3
Lj1g0012821 Lotus japonicus HOM05D007131 ORTHO05D009026 1.1e-17 94.0 70 65.7
Gohir.A11G141300 Gossypium hirsutum HOM05D007131 ORTHO05D009026 1.5e-17 93.6 70 65.7
Gorai.007G158200 Gossypium raimondii HOM05D007131 ORTHO05D009026 1.5e-17 93.6 70 64.3
Nitab4.5_0001471g0060 Nicotiana tabacum HOM05D007131 ORTHO05D009026 1.9e-17 93.2 72 63.9
PSO675G2392 Papaver somniferum HOM05D007131 ORTHO05D009026 1.9e-17 93.2 74 58.1
Solyc06g007590.3 Solanum lycopersicum HOM05D007131 ORTHO05D009026 1.9e-17 93.2 69 65.2
TAR362G0782 Trochodendron aralioides HOM05D007131 ORTHO05D009026 1.9e-17 93.2 61 68.9
ClCG09G007600 Citrullus lanatus HOM05D007131 ORTHO05D009026 2.5e-17 92.8 61 68.9
CsaV3_7G027510 Cucumis sativus L. HOM05D007131 ORTHO05D009026 2.5e-17 92.8 61 68.9
MELO3C015773.2 Cucumis melo HOM05D007131 ORTHO05D009026 3.3e-17 92.4 61 68.9
ATR1149G002 Amborella trichopoda HOM05D007131 ORTHO05D009026 5.6e-17 91.7 62 69.4
CiPaw.14G045900 Carya illinoinensis HOM05D007131 ORTHO05D009026 5.6e-17 91.7 61 73.8
Rhsim01G0249500 Rhododendron simsii HOM05D007131 ORTHO05D009026 5.6e-17 91.7 71 59.2
unitig_37.g12881 Utricularia gibba HOM05D007131 ORTHO05D009026 5.6e-17 91.7 70 60.0
DCAR_004756 Daucus carota HOM05D007131 ORTHO05D009026 7.4e-17 91.3 62 66.1
Peaxi162Scf01069g00214 Petunia axillaris HOM05D007131 ORTHO05D009026 7.4e-17 91.3 66 66.7
Phvul.008G134700 Phaseolus vulgaris HOM05D007131 ORTHO05D009026 7.4e-17 91.3 74 60.8
Psat3g150760 Pisum sativum HOM05D007131 ORTHO05D009026 1.3e-16 90.5 73 63.0
Aqoxy2G04077 Aquilegia oxysepala HOM05D007131 ORTHO05D009026 2.1e-16 89.7 122 44.3
Medtr7g053220 Medicago truncatula HOM05D007131 ORTHO05D009026 2.1e-16 89.7 66 65.2
HPP92_007612 Vanilla planifolia HOM05D007131 ORTHO05D009026 2.8e-16 89.4 62 64.5
PSO017G7069 Papaver somniferum HOM05D007131 ORTHO05D009026 4.8e-16 88.6 75 57.3
TPR.G26850 Trifolium pratense HOM05D007131 ORTHO05D009026 6.2e-16 88.2 66 65.2
A09p04560 Brassica napus HOM05D007131 ORTHO05D009026 8.2e-16 87.8 74 62.2
BraA09t36091Z Brassica rapa HOM05D007131 ORTHO05D009026 8.2e-16 87.8 74 62.2
Lsat_1_v5_gn_9_17941 Lactuca sativa HOM05D007131 ORTHO05D009026 8.2e-16 87.8 58 67.2
Lalb_Chr13g0291041 Lupinus albus HOM05D007131 ORTHO05D009026 8.2e-16 87.8 70 57.1
BolC9t53415H Brassica oleracea HOM05D007131 ORTHO05D009026 1.1e-15 87.4 78 60.3
Glyma.08G345600 Glycine max HOM05D007131 ORTHO05D009026 2.4e-15 86.3 65 64.6
Sed0006902 Sechium edule HOM05D007131 ORTHO05D009026 5.3e-15 85.1 68 61.8
VMungo1383G1151 Vigna mungo HOM05D007131 ORTHO05D009026 6.9e-15 84.7 72 58.3
SEGI_25619 Sequoiadendron giganteum HOM05D007131 ORTHO05D009026 3.4e-14 82.4 73 58.9
Oeu064654.1 Olea europaea HOM05D007131 ORTHO05D009026 6.5e-13 78.2 47 76.6
Os11g0295000 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 6.5e-13 78.2 67 58.2
SalBow3G2460 Salvia bowleyana HOM05D007131 ORTHO05D009026 4.2e-12 75.5 96 44.8
Os12g0233300 Oryza sativa ssp. japonica HOM05D007131 ORTHO05D009026 3.5e-11 72.4 61 52.5
FAN27G0491 Fragaria x ananassa HOM05D007131 ORTHO05D009026 6.1e-11 71.6 61 59.0
Pp3c1_40870 Physcomitrium patens HOM05D007131 ORTHO05D009026 1.0e-10 70.9 62 56.5
FAN24G0325 Fragaria x ananassa HOM05D007131 ORTHO05D009026 1.8e-10 70.1 61 59.0
CBR_g41484 Chara braunii HOM05D007131 ORTHO05D009026 1.9e-09 66.6 66 50.0
CBR_g28074 Chara braunii HOM05D007131 ORTHO05D009026 5.7e-09 65.1 66 48.5
SMO201G0137 Selaginella moellendorffii HOM05D007131 ORTHO05D009026 5.7e-09 65.1 48 60.4
TWI36G0143 Tripterygium wilfordii HOM05D007131 ORTHO05D009026 1.3e-08 63.9 104 41.3
AagrBONN_evm.TU.Sc2ySwM_368.401 Anthoceros agrestis HOM05D007131 ORTHO05D009026 2.2e-08 63.2 62 51.6
CDE08G0780 Ceratophyllum demersum HOM05D007131 ORTHO05D009026 3.7e-08 62.4 41 73.2
Cfa020868 Carpinus fangiana HOM05D000399 ORTHO05D008498 1.8e-07 60.1 34 85.3
Haze_19296 Corylus avellana HOM05D000399 ORTHO05D000304 1.8e-07 60.1 34 85.3
GSVIVG01001045001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.8e-07 60.1 34 82.4
MSTRG.19631 Avicennia marina HOM05D000399 ORTHO05D000304 3.1e-07 59.3 34 79.4
Lj2A1119T34 Lonicera japonica HOM05D007131 ORTHO05D009026 3.1e-07 59.3 69 49.3
QL02p091725 Quercus lobata HOM05D000399 ORTHO05D000304 3.1e-07 59.3 34 82.4
VMungo1215G2463 Vigna mungo HOM05D000399 ORTHO05D000304 5.3e-07 58.5 34 76.5
CiPaw.15G178900 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.9e-07 58.2 34 79.4
Lalb_Chr12g0198551 Lupinus albus HOM05D000399 ORTHO05D000304 6.9e-07 58.2 34 76.5
Phvul.003G175700 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 6.9e-07 58.2 34 76.5
Solyc07g005030.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.9e-07 58.2 34 76.5
Sopen07g001140 Solanum pennellii HOM05D000399 ORTHO05D000304 6.9e-07 58.2 34 76.5
Manes.14G140128 Manihot esculenta HOM05D000399 ORTHO05D000304 9.0e-07 57.8 34 76.5
TAR626G0573 Trochodendron aralioides HOM05D000399 ORTHO05D000304 9.0e-07 57.8 34 76.5
Atru.chr6.1589 Acer truncatum HOM05D007131 ORTHO05D009026 1.2e-06 57.4 74 47.3
Dinv42901 Davidia involucrata HOM05D000399 ORTHO05D000304 1.2e-06 57.4 94 37.2
Dinv43200 Davidia involucrata HOM05D000399 ORTHO05D000304 1.2e-06 57.4 94 37.2
Gohir.A05G049800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-06 57.4 34 79.4
Gohir.D05G051550 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-06 57.4 34 79.4
Gorai.009G053300 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.2e-06 57.4 34 79.4
Ca_21605_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.5e-06 57.0 34 73.5
Ca_21628_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.5e-06 57.0 34 73.5
Ciclev10007241m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.5e-06 57.0 74 45.9
Lj9C711G9 Lonicera japonica HOM05D000399 ORTHO05D000304 1.5e-06 57.0 34 73.5
arahy.Tifrunner.gnm1.ann1.M5ZY6N Arachis hypogaea HOM05D000399 ORTHO05D000304 2.0e-06 56.6 34 76.5
arahy.Tifrunner.gnm1.ann1.ZFL6Z0 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.0e-06 56.6 34 76.5
ClCG06G012100 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.0e-06 56.6 34 70.6
Prupe.7G252800 Prunus persica HOM05D000399 ORTHO05D000304 2.0e-06 56.6 34 79.4
CAN.G520.37 Capsicum annuum HOM05D000399 ORTHO05D000304 2.6e-06 56.2 34 76.5
Cc06_g07320 Coffea canephora HOM05D000399 ORTHO05D000304 2.6e-06 56.2 34 76.5
Nitab4.5_0000416g0080 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-06 56.2 34 76.5
Nitab4.5_0004050g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.6e-06 56.2 34 76.5
Eucgr.C00406 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.4e-06 55.8 34 70.6
QL10p051120 Quercus lobata HOM05D000005 ORTHO05D000012 3.4e-06 55.8 46 63.0
SGA_v2.0_scaffold183G39849 Striga asiatica HOM05D000399 ORTHO05D000304 3.4e-06 55.8 34 73.5
Thecc.09G036900 Theobroma cacao HOM05D000399 ORTHO05D000304 3.4e-06 55.8 34 79.4
Aqoxy7G03507 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 4.5e-06 55.5 89 34.8
MSTRG.10632 Avicennia marina HOM05D000399 ORTHO05D000304 4.5e-06 55.5 34 76.5
Migut.K00362 Erythranthe guttata HOM05D000399 ORTHO05D000304 4.5e-06 55.5 34 73.5
Lj4g0019891 Lotus japonicus HOM05D000399 ORTHO05D000304 4.5e-06 55.5 34 70.6
AUR62001177 Chenopodium quinoa HOM05D007131 ORTHO05D009026 5.9e-06 55.1 66 48.5
AUR62022148 Chenopodium quinoa HOM05D007131 ORTHO05D009026 5.9e-06 55.1 66 48.5
Glyma.13G156500 Glycine max HOM05D000399 ORTHO05D000304 5.9e-06 55.1 34 73.5
Peaxi162Scf00347g00328 Petunia axillaris HOM05D000399 ORTHO05D000304 5.9e-06 55.1 34 73.5
Atru.chr7.191 Acer truncatum HOM05D000399 ORTHO05D000304 7.7e-06 54.7 34 76.5
Cpa.g.sc46.94 Carica papaya HOM05D000399 ORTHO05D000304 1.0e-05 54.3 34 73.5
DCAR_008820 Daucus carota HOM05D000399 ORTHO05D000304 1.0e-05 54.3 34 70.6
DCAR_019361 Daucus carota HOM05D000399 ORTHO05D000304 1.0e-05 54.3 34 70.6
DCAR_019363 Daucus carota HOM05D000399 ORTHO05D000304 1.0e-05 54.3 34 70.6


User provided reference genes

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