Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 3.7e-35 151.0 75 100.0
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 1.0e-16 89.7 66 63.6
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 1.3e-16 89.4 64 65.6
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 8.5e-16 86.7 66 66.7
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 1.1e-15 86.3 66 62.1
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 3.2e-15 84.7 66 65.2
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 3.2e-15 84.7 66 65.2
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 1.2e-14 82.8 66 63.6
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 1.2e-14 82.8 66 62.1
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 4.7e-14 80.9 70 60.0
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 8.0e-14 80.1 55 69.1
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 8.0e-14 80.1 66 57.6
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 1.8e-13 79.0 61 67.2
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 6.8e-13 77.0 66 56.1
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 1.2e-12 76.3 66 56.1
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 2.6e-12 75.1 66 54.5
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 2.6e-12 75.1 64 57.8
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 2.6e-12 75.1 63 61.9
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 3.4e-12 74.7 62 59.7
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 5.7e-12 73.9 66 51.5
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 5.7e-12 73.9 66 53.0
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 5.7e-12 73.9 68 58.8
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 7.5e-12 73.6 66 56.1
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 7.5e-12 73.6 66 51.5
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 7.5e-12 73.6 66 51.5
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 7.5e-12 73.6 66 56.1
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 9.7e-12 73.2 67 59.7
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.3e-11 72.8 62 59.7
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 1.3e-11 72.8 63 55.6
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 1.7e-11 72.4 66 50.0
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 1.7e-11 72.4 66 50.0
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 1.7e-11 72.4 66 50.0
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 1.7e-11 72.4 63 58.7
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 2.2e-11 72.0 66 53.0
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 2.2e-11 72.0 66 51.5
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 3.7e-11 71.2 55 58.2
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 4.8e-11 70.9 55 58.2
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 6.3e-11 70.5 62 53.2
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 2.4e-10 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 3.1e-10 68.2 68 52.9
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 3.1e-10 68.2 62 56.5
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 4.1e-10 67.8 66 51.5
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 7.0e-10 67.0 67 52.2
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 7.0e-10 67.0 67 52.2
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 9.1e-10 66.6 67 55.2
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 9.1e-10 66.6 67 55.2
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 9.1e-10 66.6 67 55.2
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 1.6e-09 65.9 63 57.1
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 2.0e-09 65.5 67 55.2
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 2.7e-09 65.1 66 53.0
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 3.5e-09 64.7 58 56.9
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 3.5e-09 64.7 65 52.3
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 1.0e-08 63.2 62 54.8
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 2.9e-08 61.6 65 49.2
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 3.8e-08 61.2 62 51.6
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 3.8e-08 61.2 58 53.4
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 5.0e-08 60.8 62 54.8
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 6.5e-08 60.5 62 50.0
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.1e-07 59.7 65 44.6
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 1.9e-07 58.9 38 65.8
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 2.5e-07 58.5 69 42.0
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 3.2e-07 58.2 58 53.4
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 3.2e-07 58.2 56 51.8
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 3.2e-07 58.2 79 39.2
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 3.2e-07 58.2 65 46.2
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 5.5e-07 57.4 57 50.9
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 9.4e-07 56.6 65 43.1
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 9.4e-07 56.6 65 43.1
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 9.4e-07 56.6 63 42.9
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 9.4e-07 56.6 63 44.4
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 1.2e-06 56.2 54 53.7
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 2.1e-06 55.5 65 44.6
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 2.1e-06 55.5 66 40.9
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 2.7e-06 55.1 65 46.2
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 4.7e-06 54.3 56 46.4
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 6.1e-06 53.9 65 46.2
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 6.1e-06 53.9 56 46.4
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 8.0e-06 53.5 65 44.6


User provided reference genes

Program Settings