Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 2222.6 1129 100.0
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 0.0e+00 1665.2 1142 75.7
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 0.0e+00 1628.6 1228 70.8
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1389.8 939 78.0
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1291.6 1131 66.1
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 0.0e+00 1262.3 1134 59.3
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 0.0e+00 1251.9 1149 58.3
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 0.0e+00 1247.6 1130 58.5
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 0.0e+00 1221.5 1143 56.4
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 0.0e+00 1208.4 1146 56.6
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 0.0e+00 1203.7 1150 55.7
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 0.0e+00 1187.9 1138 55.0
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 0.0e+00 1186.0 1142 57.0
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 0.0e+00 1176.8 1146 55.1
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1175.2 1146 55.2
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 0.0e+00 1164.4 1134 54.0
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 0.0e+00 1162.9 1145 55.6
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 0.0e+00 1162.1 1128 53.9
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1159.4 1149 54.7
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 0.0e+00 1158.3 1146 55.5
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 0.0e+00 1157.5 1129 54.4
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 0.0e+00 1156.4 1129 54.1
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 0.0e+00 1154.8 1146 55.0
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 0.0e+00 1142.1 1135 55.0
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 0.0e+00 1134.4 1129 53.4
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 0.0e+00 1130.9 1152 53.0
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 0.0e+00 1126.7 1136 52.8
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1108.2 1142 52.5
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 0.0e+00 1108.2 1196 52.1
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 0.0e+00 1079.3 1137 51.6
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 0.0e+00 1075.1 1144 52.4
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 7.6e-310 1067.4 979 58.2
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 6.3e-304 1047.7 1140 51.2
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 9.0e-303 1043.9 1161 49.2
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 5.3e-295 1018.1 1172 49.3
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 9.1e-295 1017.3 1031 53.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 2.1e-291 1006.1 1251 47.8
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 9.7e-289 997.3 1142 49.6
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 9.7e-281 970.7 1133 48.3
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 1.8e-279 966.5 1097 49.2
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 2.0e-273 946.4 1128 47.3
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 1.2e-270 937.2 1151 46.7
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 4.5e-270 935.3 1137 46.4
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 2.5e-268 929.5 1132 46.3
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 4.2e-268 928.7 1132 46.2
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 4.7e-267 925.2 867 56.4
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 4.5e-262 908.7 1132 48.5
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 1.3e-261 907.1 1161 46.6
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 8.6e-261 904.4 1114 45.9
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.7e-256 890.2 1153 45.7
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 2.5e-252 876.3 1137 46.0
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 2.0e-246 856.7 1125 45.0
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 2.5e-244 849.7 1155 44.2
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 5.6e-244 848.6 813 54.4
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 5.6e-244 848.6 1177 41.9
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 3.6e-243 845.9 1132 44.7
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 1.7e-240 837.0 1137 43.4
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 7.0e-239 831.6 978 48.2
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 7.8e-238 828.2 1082 46.2
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 5.0e-237 825.5 1015 46.2
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 2.1e-235 820.1 1143 44.1
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 1.5e-228 797.3 1009 44.7
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 1.2e-219 767.7 848 50.2
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 1.1e-218 764.6 689 55.4
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 3.0e-213 746.5 859 49.2
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 2.3e-205 720.3 1136 41.2
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 5.8e-201 705.7 877 46.0
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 1.5e-196 691.0 855 47.4
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 5.6e-196 689.1 698 52.6
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 2.4e-186 657.1 1041 40.6
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 5.5e-175 619.4 1106 36.1
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.2e-169 601.7 1201 33.7
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 1.4e-154 551.6 864 40.9
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 3.4e-132 477.2 1141 30.9
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 7.5e-132 476.1 398 67.3
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 2.0e-129 468.0 406 66.0
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 3.5e-113 414.1 408 54.9
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 3.2e-106 391.0 327 63.9
GSVIVG01015592001 Vitis vinifera HOM05D007419 ORTHO05D009327 6.6e-96 356.7 276 67.4
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 1.2e-92 345.9 316 60.1
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 5.1e-88 330.5 993 29.3
Psat4g039080 Pisum sativum HOM05D007419 ORTHO05D009327 3.3e-87 327.8 334 55.1
SMO340G0190 Selaginella moellendorffii HOM05D007419 ORTHO05D009327 1.8e-80 305.4 1117 27.4
Gohir.D13G206300 Gossypium hirsutum HOM05D007419 ORTHO05D009327 8.2e-78 296.6 273 58.6
CSS0048092 Camellia sinensis var. sinensis HOM05D007419 ORTHO05D009327 3.2e-74 284.6 231 67.1
TWI34G1676 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 2.5e-71 275.0 216 67.1
QL09p046488 Quercus lobata HOM05D007419 ORTHO05D009327 9.7e-71 273.1 155 92.3
QL09p046563 Quercus lobata HOM05D007419 ORTHO05D009327 9.7e-71 273.1 155 92.3
Actinidia21951 Actinidia chinensis HOM05D007419 ORTHO05D009327 4.1e-69 267.7 266 57.5
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 9.0e-69 266.5 199 61.8
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 1.1e-63 249.6 435 36.1
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 4.8e-54 217.6 423 33.3
Eucgr.C01386 Eucalyptus grandis HOM05D007419 ORTHO05D009327 5.2e-40 171.0 159 57.9
CBR_g6680 Chara braunii HOM05D007419 ORTHO05D009327 5.7e-39 167.5 984 23.4
EL10Ac8g18720 Beta vulgaris HOM05D007419 ORTHO05D009327 2.8e-38 165.2 154 59.1
Dinv10908 Davidia involucrata HOM05D007419 ORTHO05D009327 1.2e-36 159.8 120 70.0
Oeu038257.1 Olea europaea HOM05D007419 ORTHO05D009327 2.7e-36 158.7 218 44.0
MSTRG.26436 Avicennia marina HOM05D007419 ORTHO05D009327 5.5e-34 151.0 168 50.0
MD08G1122800 Malus domestica HOM05D007419 ORTHO05D009327 5.9e-28 131.0 85 72.9
SEGI_28656 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.3e-22 113.2 786 21.2
Nn8g39545 Nelumbo nucifera HOM05D007419 ORTHO05D009327 7.3e-18 97.4 90 61.1
Medtr7g110110 Medicago truncatula HOM05D007419 ORTHO05D009327 8.3e-14 84.0 121 42.1


User provided reference genes

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