Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p047332 Quercus lobata HOM05D005905 ORTHO05D005996 4.1e-259 897.5 445 100.0
QL05p019434 Quercus lobata HOM05D005905 ORTHO05D005996 6.3e-167 591.3 723 51.7
QL09p028391 Quercus lobata HOM05D005905 ORTHO05D005996 7.7e-72 275.4 363 47.7
CiPaw.15G186200 Carya illinoinensis HOM05D005905 ORTHO05D005996 5.7e-35 152.9 196 45.9
Solyc05g056320.3 Solanum lycopersicum HOM05D005905 ORTHO05D005996 2.9e-34 150.6 181 47.0
Sopen05g034710 Solanum pennellii HOM05D005905 ORTHO05D005996 8.3e-34 149.1 181 47.0
QL10p035062 Quercus lobata HOM05D005905 ORTHO05D005996 1.1e-33 148.7 196 45.9
Haze_19376 Corylus avellana HOM05D005905 ORTHO05D005996 1.8e-33 147.9 184 47.3
PGSC0003DMG400023332 Solanum tuberosum HOM05D005905 ORTHO05D005996 1.8e-33 147.9 190 45.3
Nitab4.5_0000496g0260 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.2e-32 145.2 196 42.9
Cfa020942 Carpinus fangiana HOM05D005905 ORTHO05D005996 2.0e-32 144.4 186 46.8
Peaxi162Scf00353g00730 Petunia axillaris HOM05D005905 ORTHO05D005996 2.0e-32 144.4 194 42.8
FvH4_1g22090 Fragaria vesca HOM05D005905 ORTHO05D005996 2.7e-32 144.1 194 44.8
MD15G1334300 Malus domestica HOM05D005905 ORTHO05D005996 2.7e-32 144.1 196 43.9
Nitab4.5_0010070g0020 Nicotiana tabacum HOM05D005905 ORTHO05D005996 1.3e-31 141.7 198 41.9
Sed0023505 Sechium edule HOM05D005905 ORTHO05D005996 3.9e-31 140.2 196 43.4
Hma1.2p1_0213F.1_g090480 Hydrangea macrophylla HOM05D005905 ORTHO05D005996 5.0e-31 139.8 196 42.9
Lj4A826T50 Lonicera japonica HOM05D005905 ORTHO05D005996 6.6e-31 139.4 194 41.8
GSVIVG01000261001 Vitis vinifera HOM05D005905 ORTHO05D005996 6.6e-31 139.4 196 43.4
CAN.G1921.10 Capsicum annuum HOM05D005905 ORTHO05D005996 8.6e-31 139.0 196 41.8
SGA_v2.0_scaffold12G06257 Striga asiatica HOM05D005905 ORTHO05D005996 8.6e-31 139.0 201 42.3
Atru.chr3.1412 Acer truncatum HOM05D005905 ORTHO05D005996 1.5e-30 138.3 198 42.9
Migut.H02558 Erythranthe guttata HOM05D005905 ORTHO05D005996 1.9e-30 137.9 199 41.7
RcHm_v2.0_Chr2g0116171 Rosa chinensis HOM05D005905 ORTHO05D005996 2.5e-30 137.5 195 43.1
MELO3C015720.2 Cucumis melo HOM05D005905 ORTHO05D005996 5.6e-30 136.3 194 42.8
SalBow8G4641 Salvia bowleyana HOM05D005905 ORTHO05D005996 5.6e-30 136.3 196 41.8
Thecc.01G145000 Theobroma cacao HOM05D005905 ORTHO05D005996 7.3e-30 136.0 194 42.8
Aa31LG11G2910 Aethionema arabicum HOM05D005905 ORTHO05D005996 2.8e-29 134.0 196 41.8
MSTRG.23227 Avicennia marina HOM05D005905 ORTHO05D005996 3.6e-29 133.7 195 43.6
COL.COLO4_12147 Corchorus olitorius HOM05D005905 ORTHO05D005996 6.2e-29 132.9 194 42.3
Prupe.6G175200 Prunus persica HOM05D005905 ORTHO05D005996 8.0e-29 132.5 196 41.3
ClCG09G007860 Citrullus lanatus HOM05D005905 ORTHO05D005996 1.0e-28 132.1 200 42.0
VMungo1383G1950 Vigna mungo HOM05D005905 ORTHO05D005996 1.4e-28 131.7 186 43.0
CsaV3_7G027220 Cucumis sativus L. HOM05D005905 ORTHO05D005996 1.8e-28 131.3 194 41.2
Lalb_Chr19g0126361 Lupinus albus HOM05D005905 ORTHO05D005996 3.1e-28 130.6 194 42.8
C07p44070 Brassica napus HOM05D005905 ORTHO05D005996 4.0e-28 130.2 196 40.8
Gorai.012G048200 Gossypium raimondii HOM05D005905 ORTHO05D005996 4.0e-28 130.2 194 42.3
DCAR_019943 Daucus carota HOM05D005905 ORTHO05D005996 5.2e-28 129.8 193 40.9
Cpa.g.sc127.35 Carica papaya HOM05D005905 ORTHO05D005996 6.8e-28 129.4 194 40.7
Gohir.A05G372800 Gossypium hirsutum HOM05D005905 ORTHO05D005996 6.8e-28 129.4 194 42.3
Phvul.008G048800 Phaseolus vulgaris HOM05D005905 ORTHO05D005996 6.8e-28 129.4 188 42.0
Gohir.D04G042700 Gossypium hirsutum HOM05D005905 ORTHO05D005996 8.9e-28 129.0 194 41.8
Glyma.18G248600 Glycine max HOM05D005905 ORTHO05D005996 1.2e-27 128.6 193 40.9
MBI03_g20878_MAGBIO Magnolia biondii HOM05D005905 ORTHO05D005996 1.2e-27 128.6 198 40.9
Cc07_g19890 Coffea canephora HOM05D005905 ORTHO05D005996 1.5e-27 128.3 196 40.3
Lj1g0015901 Lotus japonicus HOM05D005905 ORTHO05D005996 1.5e-27 128.3 192 41.7
Hund21772 Selenicereus undatus HOM05D005905 ORTHO05D005996 2.6e-27 127.5 195 40.5
BcaNung03737 Brassica carinata HOM05D005905 ORTHO05D005996 3.4e-27 127.1 196 40.3
BolC7t44931H Brassica oleracea HOM05D005905 ORTHO05D005996 3.4e-27 127.1 196 40.3
CANSAT54G0939 Cannabis sativa HOM05D005905 ORTHO05D005996 4.4e-27 126.7 179 40.8
AT5G23520 Arabidopsis thaliana HOM05D005905 ORTHO05D005996 5.8e-27 126.3 196 40.3
PSO170G3497 Papaver somniferum HOM05D005905 ORTHO05D005996 5.8e-27 126.3 188 41.5
Os04g0442100 Oryza sativa ssp. japonica HOM05D005905 ORTHO05D005996 7.5e-27 125.9 186 40.9
Eucgr.H05059 Eucalyptus grandis HOM05D005905 ORTHO05D005996 9.8e-27 125.6 197 39.1
PGR102G2263 Punica granatum HOM05D005905 ORTHO05D005996 9.8e-27 125.6 197 39.6
AUR62006929 Chenopodium quinoa HOM05D005905 ORTHO05D005996 1.3e-26 125.2 196 38.8
THA.LOC104800580 Tarenaya hassleriana HOM05D005905 ORTHO05D005996 2.2e-26 124.4 196 39.8
A06p34480 Brassica napus HOM05D005905 ORTHO05D005996 2.9e-26 124.0 196 39.3
BraA06t26376Z Brassica rapa HOM05D005905 ORTHO05D005996 2.9e-26 124.0 196 39.3
HanXRQChr04g0110551 Helianthus annuus HOM05D005905 ORTHO05D005996 2.9e-26 124.0 180 40.0
unitig_899.g14973 Utricularia gibba HOM05D005905 ORTHO05D005996 2.9e-26 124.0 191 40.3
Carub.0006s2129 Capsella rubella HOM05D005905 ORTHO05D005996 3.7e-26 123.6 196 39.8
Aqoxy6G00049 Aquilegia oxysepala HOM05D005905 ORTHO05D005996 4.9e-26 123.2 179 41.3
AL6G34790 Arabidopsis lyrata HOM05D005905 ORTHO05D005996 4.9e-26 123.2 196 38.8
Nn5g27344 Nelumbo nucifera HOM05D005905 ORTHO05D005996 8.3e-26 122.5 197 39.6
PSO017G4395 Papaver somniferum HOM05D005905 ORTHO05D005996 8.3e-26 122.5 188 41.0
Potri.T013000 Populus trichocarpa HOM05D005905 ORTHO05D005996 8.3e-26 122.5 196 40.8
BcaNung03738 Brassica carinata HOM05D005905 ORTHO05D005996 1.4e-25 121.7 196 39.8
BcaNung03739 Brassica carinata HOM05D005905 ORTHO05D005996 1.4e-25 121.7 196 39.8
arahy.Tifrunner.gnm1.ann1.TUTH4E Arachis hypogaea HOM05D005905 ORTHO05D005996 1.9e-25 121.3 195 41.0
CARHR190020 Cardamine hirsuta HOM05D005905 ORTHO05D005996 1.9e-25 121.3 196 37.8
arahy.Tifrunner.gnm1.ann1.N289YY Arachis hypogaea HOM05D005905 ORTHO05D005996 2.4e-25 120.9 194 41.8
Dinv17124 Davidia involucrata HOM05D010983 ORTHO05D005996 2.4e-25 120.9 194 40.7
FAN19G0082 Fragaria x ananassa HOM05D005905 ORTHO05D005996 2.4e-25 120.9 179 41.3
Sp2g23680 Schrenkiella parvula HOM05D005905 ORTHO05D005996 2.4e-25 120.9 195 39.5
Ca_08049_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 5.4e-25 119.8 197 37.6
Ca_08055_v3 Cicer arietinum L. HOM05D005905 ORTHO05D005996 5.4e-25 119.8 197 37.6
TPR.G29110 Trifolium pratense HOM05D005905 ORTHO05D005996 5.4e-25 119.8 186 39.2
vmacro12853 Vaccinium macrocarpon HOM05D005905 ORTHO05D005996 9.2e-25 119.0 196 39.3
Lsat_1_v5_gn_2_40320 Lactuca sativa HOM05D005905 ORTHO05D005996 1.2e-24 118.6 143 46.9
Rhsim10G0138000 Rhododendron simsii HOM05D006573 ORTHO05D008073 1.2e-24 118.6 196 38.8
TAR628G0724 Trochodendron aralioides HOM05D005905 ORTHO05D005996 1.2e-24 118.6 192 39.1
SEGI_40650 Sequoiadendron giganteum HOM05D005905 ORTHO05D005996 1.6e-24 118.2 182 38.5
AUR62000575 Chenopodium quinoa HOM05D005905 ORTHO05D005996 2.0e-24 117.9 216 36.1
Sabra19G0011400 Salix brachista HOM05D005905 ORTHO05D005996 2.0e-24 117.9 196 39.3
Sc09g0001990 Simmondsia chinensis HOM05D005905 ORTHO05D005996 3.5e-24 117.1 175 41.1
EL10Ac8g19310 Beta vulgaris HOM05D005905 ORTHO05D005996 4.6e-24 116.7 200 38.5
Sabra19G0001400 Salix brachista HOM05D005905 ORTHO05D005996 4.6e-24 116.7 196 38.8
CDE02G2172 Ceratophyllum demersum HOM05D005905 ORTHO05D005996 6.0e-24 116.3 195 37.9
Medtr7g081260 Medicago truncatula HOM05D005905 ORTHO05D005996 7.8e-24 115.9 193 37.8
EL10Ac4g09704 Beta vulgaris HOM05D005905 ORTHO05D005996 1.3e-23 115.2 200 37.0
Psat3g100200 Pisum sativum HOM05D005905 ORTHO05D005996 2.3e-23 114.4 191 38.7
Manes.13G155500 Manihot esculenta HOM05D005905 ORTHO05D005996 3.0e-23 114.0 195 39.5
Manes.17G045200 Manihot esculenta HOM05D005905 ORTHO05D005996 3.9e-23 113.6 187 38.0
Cc07_g19900 Coffea canephora HOM05D005905 ORTHO05D005996 5.0e-23 113.2 232 34.9
Medtr6g034130 Medicago truncatula HOM05D005905 ORTHO05D005996 6.6e-23 112.8 131 44.3
TWI75G0068 Tripterygium wilfordii HOM05D005905 ORTHO05D005996 8.6e-23 112.5 178 39.3
Lalb_Chr20g0117801 Lupinus albus HOM05D005905 ORTHO05D005996 1.5e-22 111.7 159 41.5
Lalb_Chr20g0117861 Lupinus albus HOM05D005905 ORTHO05D005996 1.5e-22 111.7 159 41.5
Ciclev10025459m.g Citrus clementina HOM05D005905 ORTHO05D005996 1.9e-22 111.3 122 50.8
Glyma.09G244700 Glycine max HOM05D005905 ORTHO05D005996 3.3e-22 110.5 172 39.5
Duzib187G1788 Durio zibethinus HOM05D005905 ORTHO05D005996 6.2e-21 106.3 170 38.2
HPP92_011435 Vanilla planifolia HOM05D005905 ORTHO05D005996 6.2e-21 106.3 175 39.4
BcaNung03858 Brassica carinata HOM05D005905 ORTHO05D005996 2.3e-20 104.4 179 38.0
Thhalv10004341m.g Eutrema salsugineum HOM05D005905 ORTHO05D005996 3.1e-20 104.0 178 38.2
Atru.chr3.1426 Acer truncatum HOM05D005905 ORTHO05D005996 6.8e-20 102.8 102 52.0
Pp3c18_21070 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.0e-19 101.3 202 36.1
Mapoly0015s0082 Marchantia polymorpha HOM05D005905 ORTHO05D005996 3.4e-19 100.5 204 35.3
Ah.06g188350 Amaranthus hybridus HOM05D005905 ORTHO05D005996 4.4e-19 100.1 161 38.5
FAN28G0415 Fragaria x ananassa HOM05D000290 ORTHO05D002418 4.4e-19 100.1 175 37.7
Medtr6g034165 Medicago truncatula HOM05D005905 ORTHO05D005996 2.2e-18 97.8 150 36.0
Pp3c21_2450 Physcomitrium patens HOM05D005905 ORTHO05D005996 2.2e-18 97.8 201 34.3
ATR1089G162 Amborella trichopoda HOM05D005905 ORTHO05D005996 8.3e-18 95.9 179 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3232 Anthoceros agrestis HOM05D005905 ORTHO05D005996 2.4e-17 94.4 182 35.2
SHI08855 Sapria himalayana HOM05D005905 ORTHO05D005996 9.2e-17 92.4 116 45.7
Ah.06g188340 Amaranthus hybridus HOM05D005905 ORTHO05D005996 2.7e-16 90.9 140 40.0
TPR.G33754 Trifolium pratense HOM05D005905 ORTHO05D005996 4.6e-16 90.1 110 45.5
SMO239G0053 Selaginella moellendorffii HOM05D005905 ORTHO05D005996 6.0e-16 89.7 139 41.7
Lj3g0014044 Lotus japonicus HOM05D005905 ORTHO05D005996 2.5e-14 84.3 100 42.0
QL09p047340 Quercus lobata HOM05D005905 ORTHO05D005996 7.3e-14 82.8 44 90.9
FAN26G1302 Fragaria x ananassa HOM05D000290 ORTHO05D002418 2.8e-13 80.9 156 37.2
Ah.14g088890 Amaranthus hybridus HOM05D005905 ORTHO05D005996 3.1e-12 77.4 164 34.1
HPP92_011427 Vanilla planifolia HOM05D005905 ORTHO05D005996 8.9e-12 75.9 118 39.0
FAN23G0918 Fragaria x ananassa HOM05D000290 ORTHO05D002418 1.2e-11 75.5 81 50.6
Ah.06g188380 Amaranthus hybridus HOM05D005905 ORTHO05D005996 9.9e-11 72.4 137 33.6
RcHm_v2.0_Chr7g0203221 Rosa chinensis HOM05D005281 ORTHO05D006351 5.1e-07 60.1 157 27.4
Cre06.g287176 Chlamydomonas reinhardtii HOM05D005905 ORTHO05D005996 8.6e-07 59.3 83 42.2
FAN18G1830 Fragaria x ananassa HOM05D005281 ORTHO05D006351 8.6e-07 59.3 168 26.8
FvH4_5g18840 Fragaria vesca HOM05D005281 ORTHO05D006351 1.1e-06 58.9 157 27.4
FAN18G0195 Fragaria x ananassa HOM05D005281 ORTHO05D006351 1.1e-06 58.9 157 27.4


User provided reference genes

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