Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p046495 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1253.8 617 100.0
QL09p046570 Quercus lobata HOM05D007419 ORTHO05D009327 0.0e+00 1092.4 614 90.1
QL09p047694 Quercus lobata HOM05D007419 ORTHO05D009327 1.6e-128 464.2 406 66.0
Haze_25509 Corylus avellana HOM05D007419 ORTHO05D009327 8.1e-96 355.5 414 52.2
QL09p047989 Quercus lobata HOM05D007419 ORTHO05D009327 8.1e-96 355.5 385 56.9
Cfa003423 Carpinus fangiana HOM05D007419 ORTHO05D009327 9.3e-92 342.0 415 50.1
Sabra18G0107200 Salix brachista HOM05D007419 ORTHO05D009327 8.7e-74 282.3 405 42.0
Potri.018G126300 Populus trichocarpa HOM05D007419 ORTHO05D009327 3.3e-73 280.4 405 43.0
QL09p047847 Quercus lobata HOM05D007419 ORTHO05D009327 1.6e-72 278.1 306 57.5
Atru.chr7.1950 Acer truncatum HOM05D007419 ORTHO05D009327 1.2e-67 261.9 417 40.8
CANSAT11G1590 Cannabis sativa HOM05D007419 ORTHO05D009327 6.3e-64 249.6 418 38.5
Glyma.17G111300 Glycine max HOM05D007419 ORTHO05D009327 1.8e-63 248.1 430 37.7
TAR636G1395 Trochodendron aralioides HOM05D007419 ORTHO05D009327 3.4e-62 243.8 421 38.5
GSVIVG01015591001 Vitis vinifera HOM05D007419 ORTHO05D009327 3.4e-62 243.8 460 36.1
Manes.06G047100 Manihot esculenta HOM05D007419 ORTHO05D009327 2.2e-61 241.1 404 37.9
Medtr4g115340 Medicago truncatula HOM05D007419 ORTHO05D009327 2.9e-61 240.7 419 37.0
TPR.G24826 Trifolium pratense HOM05D007419 ORTHO05D009327 1.1e-60 238.8 396 37.4
Phvul.003G168900 Phaseolus vulgaris HOM05D007419 ORTHO05D009327 3.2e-60 237.3 430 36.0
MD15G1166600 Malus domestica HOM05D007419 ORTHO05D009327 4.2e-60 236.9 427 35.8
Sed0020697 Sechium edule HOM05D007419 ORTHO05D009327 4.2e-60 236.9 416 37.3
TWI34G0413 Tripterygium wilfordii HOM05D007419 ORTHO05D009327 5.5e-60 236.5 415 37.8
FvH4_1g02590 Fragaria vesca HOM05D007419 ORTHO05D009327 7.2e-60 236.1 417 37.6
FAN19G0754 Fragaria x ananassa HOM05D007419 ORTHO05D009327 9.3e-60 235.7 417 37.6
Lalb_Chr13g0301571 Lupinus albus HOM05D007419 ORTHO05D009327 2.1e-59 234.6 424 37.5
RcHm_v2.0_Chr2g0087621 Rosa chinensis HOM05D007419 ORTHO05D009327 3.5e-59 233.8 415 36.4
Ca_06942_v3 Cicer arietinum L. HOM05D007419 ORTHO05D009327 1.0e-58 232.3 401 37.2
MELO3C029461.2 Cucumis melo HOM05D007419 ORTHO05D009327 5.1e-58 229.9 415 36.1
Psat4g039120 Pisum sativum HOM05D007419 ORTHO05D009327 1.5e-57 228.4 401 36.7
FAN28G1883 Fragaria x ananassa HOM05D007419 ORTHO05D009327 1.9e-57 228.0 417 37.2
FAN26G2390 Fragaria x ananassa HOM05D007419 ORTHO05D009327 4.3e-57 226.9 417 37.2
VMungo1215G0197 Vigna mungo HOM05D007419 ORTHO05D009327 4.3e-57 226.9 430 34.9
ClCG06G011500 Citrullus lanatus HOM05D007419 ORTHO05D009327 9.7e-57 225.7 416 36.1
Lj4g0016099 Lotus japonicus HOM05D007419 ORTHO05D009327 2.8e-56 224.2 420 35.2
arahy.Tifrunner.gnm1.ann1.SLI0XQ Arachis hypogaea HOM05D007419 ORTHO05D009327 1.4e-55 221.9 405 37.0
arahy.Tifrunner.gnm1.ann1.XRJX6H Arachis hypogaea HOM05D007419 ORTHO05D009327 3.1e-55 220.7 405 36.5
Prupe.7G248700 Prunus persica HOM05D007419 ORTHO05D009327 4.1e-55 220.3 340 42.6
Gohir.D13G206200 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.5e-54 218.4 406 36.5
Gorai.013G235200 Gossypium raimondii HOM05D007419 ORTHO05D009327 1.5e-54 218.4 406 36.5
Gohir.A13G200700 Gossypium hirsutum HOM05D007419 ORTHO05D009327 1.7e-53 214.9 406 36.2
Thecc.09G132300 Theobroma cacao HOM05D007419 ORTHO05D009327 3.8e-53 213.8 412 37.4
COL.COLO4_35160 Corchorus olitorius HOM05D007419 ORTHO05D009327 9.4e-52 209.1 418 36.1
Lj7A626G73 Lonicera japonica HOM05D007419 ORTHO05D009327 2.1e-51 208.0 451 31.9
Dinv41474 Davidia involucrata HOM05D003622 ORTHO05D004453 6.7e-50 203.0 398 36.2
Eucgr.C01385 Eucalyptus grandis HOM05D007419 ORTHO05D009327 3.3e-49 200.7 411 36.0
Actinidia21952 Actinidia chinensis HOM05D007419 ORTHO05D009327 2.8e-48 197.6 357 38.1
DCAR_014901 Daucus carota HOM05D007419 ORTHO05D009327 6.3e-48 196.4 411 31.6
Aqoxy7G03635 Aquilegia oxysepala HOM05D007419 ORTHO05D009327 4.1e-47 193.7 443 32.7
Cc06_g08060 Coffea canephora HOM05D007419 ORTHO05D009327 4.5e-46 190.3 451 32.2
CsaV3_1G026730 Cucumis sativus L. HOM05D007419 ORTHO05D009327 1.7e-45 188.3 353 37.4
Rhsim01G0061500 Rhododendron simsii HOM05D007419 ORTHO05D009327 2.2e-45 188.0 454 31.7
Glyma.13G160200 Glycine max HOM05D007419 ORTHO05D009327 3.8e-45 187.2 376 36.4
ECA234G0484 Erigeron canadensis HOM05D007419 ORTHO05D009327 5.5e-44 183.3 373 33.2
CAN.G1315.3 Capsicum annuum HOM05D007419 ORTHO05D009327 4.7e-43 180.3 440 31.4
PGSC0003DMG400030908 Solanum tuberosum HOM05D007419 ORTHO05D009327 1.8e-42 178.3 440 31.1
HanXRQChr12g0356641 Helianthus annuus HOM05D007419 ORTHO05D009327 3.0e-42 177.6 371 33.7
vmacro07721 Vaccinium macrocarpon HOM05D007419 ORTHO05D009327 3.0e-42 177.6 423 32.2
Nitab4.5_0003393g0060 Nicotiana tabacum HOM05D007419 ORTHO05D009327 2.0e-41 174.9 416 31.2
Solyc07g007920.3 Solanum lycopersicum HOM05D007419 ORTHO05D009327 2.0e-41 174.9 440 30.5
Sc08g0006270 Simmondsia chinensis HOM05D007419 ORTHO05D009327 2.6e-41 174.5 420 30.0
Migut.K00424 Erythranthe guttata HOM05D007419 ORTHO05D009327 4.4e-41 173.7 398 32.4
Sopen07g003800 Solanum pennellii HOM05D007419 ORTHO05D009327 7.4e-41 172.9 440 30.5
Peaxi162Scf00088g01333 Petunia axillaris HOM05D007419 ORTHO05D009327 1.3e-40 172.2 496 28.8
Nitab4.5_0002008g0040 Nicotiana tabacum HOM05D007419 ORTHO05D009327 3.7e-40 170.6 413 30.5
SalBow1G7934 Salvia bowleyana HOM05D007419 ORTHO05D009327 5.9e-38 163.3 493 29.6
AUR62013308 Chenopodium quinoa HOM05D007419 ORTHO05D009327 7.7e-38 162.9 403 29.8
Lsat_1_v5_gn_5_91781 Lactuca sativa HOM05D007419 ORTHO05D009327 3.8e-37 160.6 357 32.8
SGA_v2.0_scaffold109G31074 Striga asiatica HOM05D007419 ORTHO05D009327 6.5e-37 159.8 403 31.3
Duzib168G0167 Durio zibethinus HOM05D007419 ORTHO05D009327 3.0e-34 151.0 229 42.4
Ah.09g224820 Amaranthus hybridus HOM05D007419 ORTHO05D009327 3.3e-33 147.5 424 27.4
Nn8g39549 Nelumbo nucifera HOM05D007419 ORTHO05D009327 1.7e-29 135.2 330 30.9
ATR0800G079 Amborella trichopoda HOM05D007419 ORTHO05D009327 8.5e-29 132.9 425 28.5
MBI15_g15110_MAGBIO Magnolia biondii HOM05D007419 ORTHO05D009327 9.4e-28 129.4 298 30.2
FAN23G1807 Fragaria x ananassa HOM05D007419 ORTHO05D009327 5.2e-26 123.6 242 35.5
SEGI_05905 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 4.5e-22 110.5 213 33.8
SEGI_33879 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 4.5e-22 110.5 213 33.8
Hund26535 Selenicereus undatus HOM05D007419 ORTHO05D009327 3.2e-20 104.4 141 44.0
MD15G1167400 Malus domestica HOM05D007419 ORTHO05D009327 8.0e-19 99.8 74 67.6
PGR044G2517 Punica granatum HOM05D023452 ORTHO05D019051 1.4e-18 99.0 186 37.1
COL.COLO4_29429 Corchorus olitorius HOM05D035412 ORTHO05D019051 2.3e-18 98.2 172 34.3
COL.COLO4_29430 Corchorus olitorius HOM05D035412 ORTHO05D019051 2.3e-18 98.2 181 33.1
PGR031G1231 Punica granatum HOM05D023452 ORTHO05D019051 4.0e-18 97.4 147 39.5
PGR031G1460 Punica granatum HOM05D023452 ORTHO05D019051 2.6e-17 94.7 145 38.6
PGR031G0854 Punica granatum HOM05D023452 ORTHO05D019051 3.4e-17 94.4 155 38.7
PGR031G3116 Punica granatum HOM05D023452 ORTHO05D019051 7.5e-17 93.2 115 45.2
Oeu012224.2 Olea europaea HOM05D007419 ORTHO05D009327 2.8e-16 91.3 120 40.8
CAN.G778.5 Capsicum annuum HOM05D007419 ORTHO05D009327 1.4e-15 89.0 73 54.8
AUR62011176 Chenopodium quinoa HOM05D007419 ORTHO05D009327 9.2e-15 86.3 70 58.6
Sc05g0006310 Simmondsia chinensis HOM05D007419 ORTHO05D009327 2.7e-14 84.7 204 31.4
Zm00001eb375320 Zea mays HOM05D007419 ORTHO05D009327 3.5e-14 84.3 198 28.3
Os06g0173000 Oryza sativa ssp. japonica HOM05D007419 ORTHO05D009327 1.0e-13 82.8 201 27.9
Rhsim02G0161800 Rhododendron simsii HOM05D015811 ORTHO05D014676 3.3e-12 77.8 217 30.9
RcHm_v2.0_Chr1g0376501 Rosa chinensis HOM05D008398 ORTHO05D005682 4.3e-12 77.4 236 28.0
SEGI_04675 Sequoiadendron giganteum HOM05D007419 ORTHO05D009327 1.2e-11 75.9 200 30.0
Cfa014784 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.8e-10 72.0 140 31.4
Rhsim04G0226600 Rhododendron simsii HOM05D015811 ORTHO05D014676 1.8e-10 72.0 216 31.0
Prupe.5G157900 Prunus persica HOM05D013255 ORTHO05D011422 2.3e-10 71.6 111 38.7
Rhsim02G0162000 Rhododendron simsii HOM05D015811 ORTHO05D014676 5.2e-10 70.5 161 32.3
FAN19G2793 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.2e-09 69.3 167 31.7
FvH4_1g04980 Fragaria vesca HOM05D006732 ORTHO05D005682 1.5e-09 68.9 156 31.4
FAN19G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.5e-09 68.9 156 31.4
Cfa014727 Carpinus fangiana HOM05D008391 ORTHO05D009743 2.6e-09 68.2 140 30.7
FvH4_1g03120 Fragaria vesca HOM05D006732 ORTHO05D005682 3.4e-09 67.8 144 34.0
FvH4_1g04870 Fragaria vesca HOM05D006732 ORTHO05D005682 3.4e-09 67.8 167 31.1
FvH4_1g04892 Fragaria vesca HOM05D006732 ORTHO05D005682 3.4e-09 67.8 167 31.1
FAN23G0359 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.4e-09 67.8 154 31.2
CAN.G767.7 Capsicum annuum HOM05D000249 ORTHO05D000206 4.4e-09 67.4 145 31.7
FAN19G1106 Fragaria x ananassa HOM05D006732 ORTHO05D005682 4.4e-09 67.4 144 34.0
Thecc.03G305700 Theobroma cacao HOM05D017991 ORTHO05D020493 4.4e-09 67.4 118 33.9
FvH4_1g04981 Fragaria vesca HOM05D006732 ORTHO05D005682 5.7e-09 67.0 167 31.7
FvH4_1g04982 Fragaria vesca HOM05D006732 ORTHO05D005682 5.7e-09 67.0 162 30.2
FvH4_5g09240 Fragaria vesca HOM05D006732 ORTHO05D005682 5.7e-09 67.0 164 29.9
FAN19G0447 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.7e-09 67.0 167 31.7
FAN23G1322 Fragaria x ananassa HOM05D006732 ORTHO05D005682 5.7e-09 67.0 167 31.7
Rhsim04G0226100 Rhododendron simsii HOM05D015811 ORTHO05D014676 5.7e-09 67.0 160 30.6
Rhsim04G0226700 Rhododendron simsii HOM05D015811 ORTHO05D014676 5.7e-09 67.0 161 31.7
CSS0024213 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 7.5e-09 66.6 240 24.2
Cfa005103 Carpinus fangiana HOM05D008391 ORTHO05D009743 7.5e-09 66.6 99 35.4
Cfa007631 Carpinus fangiana HOM05D008391 ORTHO05D009743 1.3e-08 65.9 129 34.9
Prupe.5G008800 Prunus persica HOM05D013255 ORTHO05D011422 1.3e-08 65.9 95 35.8
Aqoxy2G03550 Aquilegia oxysepala HOM05D013671 ORTHO05D010877 1.7e-08 65.5 103 35.9
Solyc04g051870.3 Solanum lycopersicum HOM05D000249 ORTHO05D000206 1.7e-08 65.5 101 36.6
Sopen04g023200 Solanum pennellii HOM05D000249 ORTHO05D000206 1.7e-08 65.5 101 36.6
FvH4_1g03650 Fragaria vesca HOM05D006732 ORTHO05D005682 2.2e-08 65.1 145 32.4
Rhsim11G0054100 Rhododendron simsii HOM05D015811 ORTHO05D014676 2.2e-08 65.1 161 31.7
FAN23G0913 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.9e-08 64.7 167 31.1
FAN26G0545 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.9e-08 64.7 115 33.9
PGSC0003DMG400016578 Solanum tuberosum HOM05D000249 ORTHO05D000206 2.9e-08 64.7 101 36.6
CSS0012204 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 3.7e-08 64.3 255 23.9
CAN.G65.201 Capsicum annuum HOM05D000249 ORTHO05D000206 3.7e-08 64.3 101 36.6
RcHm_v2.0_Chr2g0090631 Rosa chinensis HOM05D006732 ORTHO05D005682 3.7e-08 64.3 164 28.7
Nn1g05186 Nelumbo nucifera HOM05D000249 ORTHO05D000206 4.9e-08 63.9 149 31.5
CSS0027353 Camellia sinensis var. sinensis HOM05D013255 ORTHO05D011422 6.4e-08 63.5 177 29.4
FAN26G0599 Fragaria x ananassa HOM05D006732 ORTHO05D005682 6.4e-08 63.5 156 30.1
FAN08G0591 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.3e-08 63.2 164 28.7
FAN26G0144 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.3e-08 63.2 158 28.5
FAN26G1852 Fragaria x ananassa HOM05D006732 ORTHO05D005682 8.3e-08 63.2 160 29.4
Nitab4.5_0000904g0030 Nicotiana tabacum HOM05D000249 ORTHO05D000206 8.3e-08 63.2 101 36.6
COL.COLO4_16993 Corchorus olitorius HOM05D017991 ORTHO05D020493 1.1e-07 62.8 129 31.8
Peaxi162Scf00359g00005 Petunia axillaris HOM05D000249 ORTHO05D000206 1.1e-07 62.8 101 35.6
CSS0013471 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.4e-07 62.4 100 34.0
FAN19G2470 Fragaria x ananassa HOM05D006732 ORTHO05D005682 1.4e-07 62.4 140 32.1
CSS0028906 Camellia sinensis var. sinensis HOM05D000249 ORTHO05D000206 1.8e-07 62.0 100 33.0
Lj5A250G20 Lonicera japonica HOM05D012292 ORTHO05D012234 1.8e-07 62.0 135 29.6
Nitab4.5_0005995g0010 Nicotiana tabacum HOM05D000249 ORTHO05D000206 1.8e-07 62.0 101 35.6
Rhsim10G0150200 Rhododendron simsii HOM05D000249 ORTHO05D000206 1.8e-07 62.0 99 35.4
COL.COLO4_16992 Corchorus olitorius HOM05D017991 ORTHO05D020493 2.4e-07 61.6 119 35.3
FAN18G2797 Fragaria x ananassa HOM05D006732 ORTHO05D005682 2.4e-07 61.6 117 34.2
RcHm_v2.0_Chr2g0090681 Rosa chinensis HOM05D006732 ORTHO05D005682 2.4e-07 61.6 162 30.9
C07p63080 Brassica napus HOM05D000249 ORTHO05D000206 3.2e-07 61.2 98 36.7
FAN05G1364 Fragaria x ananassa HOM05D006732 ORTHO05D005682 3.2e-07 61.2 156 30.8
Lj5C264T6 Lonicera japonica HOM05D012292 ORTHO05D012234 4.1e-07 60.8 194 28.4
Actinidia16043 Actinidia chinensis HOM05D000249 ORTHO05D000206 5.4e-07 60.5 97 34.0
FvH4_1g05020 Fragaria vesca HOM05D006732 ORTHO05D005682 5.4e-07 60.5 159 31.4
Hma1.2p1_0375F.1_g138740 Hydrangea macrophylla HOM05D000249 ORTHO05D000206 5.4e-07 60.5 110 32.7
QL11p055392 Quercus lobata HOM05D010066 ORTHO05D009743 5.4e-07 60.5 112 35.7
Prupe.6G029800 Prunus persica HOM05D006732 ORTHO05D005682 7.0e-07 60.1 115 38.3
RcHm_v2.0_Chr2g0088891 Rosa chinensis HOM05D006732 ORTHO05D005682 7.0e-07 60.1 167 27.5
A06p48420 Brassica napus HOM05D000249 ORTHO05D000206 9.2e-07 59.7 111 35.1
BraA06t27710Z Brassica rapa HOM05D000249 ORTHO05D000206 9.2e-07 59.7 111 35.1
Rhsim08G0029000 Rhododendron simsii HOM05D013671 ORTHO05D012833 9.2e-07 59.7 114 37.7
Aqoxy2G03423 Aquilegia oxysepala HOM05D011324 ORTHO05D013448 1.2e-06 59.3 103 36.9
Lj4P874T30 Lonicera japonica HOM05D000249 ORTHO05D000206 1.6e-06 58.9 116 31.9
Lj4P930T42 Lonicera japonica HOM05D000249 ORTHO05D000206 1.6e-06 58.9 116 31.9
Haze_14914 Corylus avellana HOM05D008391 ORTHO05D009743 2.0e-06 58.5 92 37.0
Dinv19486 Davidia involucrata HOM05D000249 ORTHO05D000206 5.9e-06 57.0 95 34.7
Thhalv10004132m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.9e-06 57.0 93 34.4
vmacro21157 Vaccinium macrocarpon HOM05D004925 ORTHO05D005643 5.9e-06 57.0 118 30.5
Cfa003918 Carpinus fangiana HOM05D008391 ORTHO05D009743 7.8e-06 56.6 106 33.0
FAN23G1399 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.8e-06 56.6 161 30.4
FAN23G2814 Fragaria x ananassa HOM05D006732 ORTHO05D005682 7.8e-06 56.6 161 30.4
Lju1319C0T4 Lonicera japonica HOM05D028833 ORTHO05D012833 7.8e-06 56.6 135 33.3


User provided reference genes

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