Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 4.6e-180 634.4 313 100.0
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 3.6e-92 342.4 352 58.8
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.0e-66 256.9 352 48.0
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 2.0e-58 230.3 353 45.0
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 3.8e-57 226.1 316 46.5
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 1.9e-53 213.8 311 45.0
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 3.2e-40 169.9 287 42.2
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 1.3e-33 147.9 324 36.1
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 8.4e-33 145.2 222 42.8
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 2.1e-28 130.6 281 37.0
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 2.8e-28 130.2 303 36.3
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 4.5e-26 122.9 285 33.3
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 4.5e-26 122.9 285 33.3
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.5e-26 122.9 164 45.7
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.5e-26 122.9 164 45.7
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.2e-23 114.8 103 56.3
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 1.2e-23 114.8 283 35.7
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 1.6e-23 114.4 207 37.7
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 4.6e-23 112.8 214 39.3
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 7.9e-23 112.1 306 31.4
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.0e-22 111.7 135 44.4
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 6.7e-22 109.0 106 54.7
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 8.7e-22 108.6 106 54.7
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.5e-21 107.8 95 54.7
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 3.3e-21 106.7 132 44.7
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 5.7e-21 105.9 144 44.4
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 7.4e-21 105.5 293 31.4
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 3.7e-20 103.2 103 51.5
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 3.7e-20 103.2 130 45.4
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 3.7e-20 103.2 253 31.6
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 4.8e-20 102.8 129 47.3
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 4.8e-20 102.8 130 45.4
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 4.8e-20 102.8 305 32.1
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.4e-19 101.3 119 47.9
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.1e-19 99.8 309 31.7
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 5.3e-19 99.4 299 31.4
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 6.9e-19 99.0 111 49.5
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 4.5e-18 96.3 99 49.5
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 7.7e-18 95.5 106 49.1
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 7.7e-18 95.5 184 36.4
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 7.7e-18 95.5 119 46.2
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 1.3e-17 94.7 106 49.1
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 1.3e-17 94.7 106 49.1
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 2.9e-17 93.6 119 46.2
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 6.5e-17 92.4 171 36.8
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.5e-17 92.0 100 50.0
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 2.5e-16 90.5 105 50.5
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 2.5e-16 90.5 94 51.1
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.2e-16 90.1 242 28.1
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 5.5e-16 89.4 146 39.0
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 5.5e-16 89.4 116 40.5
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 9.4e-16 88.6 130 39.2
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.2e-15 88.2 114 45.6
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.2e-15 88.2 326 27.3
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 2.1e-15 87.4 109 41.3
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 2.7e-15 87.0 171 35.7
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 2.7e-15 87.0 320 27.5
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 3.6e-15 86.7 119 44.5
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 4.6e-15 86.3 163 35.0
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 7.9e-15 85.5 243 29.6
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 7.9e-15 85.5 125 42.4
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 7.9e-15 85.5 277 30.7
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 7.9e-15 85.5 163 35.0
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 7.9e-15 85.5 321 30.2
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.0e-14 85.1 112 44.6
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 1.4e-14 84.7 97 45.4
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 1.8e-14 84.3 143 39.9
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 1.8e-14 84.3 102 47.1
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 2.3e-14 84.0 167 35.9
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 2.3e-14 84.0 102 46.1
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 2.3e-14 84.0 177 35.6
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 2.3e-14 84.0 99 46.5
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 3.0e-14 83.6 101 46.5
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 3.9e-14 83.2 125 41.6
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 5.1e-14 82.8 154 35.1
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 5.1e-14 82.8 94 47.9
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 5.1e-14 82.8 186 34.4
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 6.7e-14 82.4 108 43.5
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 6.7e-14 82.4 102 46.1
Aa31LG2G10940 Aethionema arabicum HOM05D003174 ORTHO05D003439 8.8e-14 82.0 259 30.1
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 8.8e-14 82.0 321 28.7
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 1.1e-13 81.6 99 45.5
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 2.0e-13 80.9 104 45.2
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 2.5e-13 80.5 102 42.2
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 2.5e-13 80.5 102 42.2
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 3.3e-13 80.1 205 33.2
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 4.3e-13 79.7 96 45.8
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 4.3e-13 79.7 96 45.8
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 5.7e-13 79.3 126 37.3
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 5.7e-13 79.3 126 37.3
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 7.4e-13 79.0 99 42.4
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 7.4e-13 79.0 97 46.4
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 7.4e-13 79.0 246 28.9
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 7.4e-13 79.0 90 43.3
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 9.7e-13 78.6 94 46.8
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 9.7e-13 78.6 213 31.0
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 9.7e-13 78.6 131 38.9
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.2e-12 77.4 96 45.8
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 3.7e-12 76.6 127 38.6
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 4.8e-12 76.3 101 38.6
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 4.8e-12 76.3 102 44.1
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 8.2e-12 75.5 126 35.7
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 8.2e-12 75.5 104 42.3
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 8.2e-12 75.5 107 41.1
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 8.2e-12 75.5 114 41.2
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 8.2e-12 75.5 156 36.5
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.1e-11 75.1 115 37.4
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 1.1e-11 75.1 126 35.7
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.1e-11 75.1 169 33.1
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.8e-11 74.3 118 36.4
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 1.8e-11 74.3 233 30.5
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.8e-11 74.3 115 39.1
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 2.4e-11 73.9 94 44.7
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 2.4e-11 73.9 103 40.8
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 2.4e-11 73.9 103 40.8
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 5.3e-11 72.8 114 39.5
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 9.1e-11 72.0 77 50.6
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 1.2e-10 71.6 111 40.5
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 1.5e-10 71.2 231 30.3
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 2.6e-10 70.5 138 31.9
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 5.9e-10 69.3 288 26.0
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 7.7e-10 68.9 110 40.9
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 1.0e-09 68.6 245 27.8
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.0e-09 68.6 90 44.4
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.9e-09 67.0 79 46.8
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.9e-09 67.0 94 42.6
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.9e-09 67.0 79 46.8
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 2.9e-09 67.0 95 40.0
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 3.8e-09 66.6 115 37.4
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 8.5e-09 65.5 122 37.7
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 7.2e-08 62.4 74 45.9
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 9.4e-08 62.0 108 38.0
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 2.1e-07 60.8 93 40.9
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 3.6e-07 60.1 108 37.0
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 3.6e-07 60.1 77 41.6
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 4.7e-07 59.7 82 45.1
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 4.7e-07 59.7 64 48.4
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.7e-07 59.7 67 47.8
FAN05G5174 Fragaria x ananassa HOM05D003174 ORTHO05D003439 6.1e-07 59.3 108 37.0
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 6.1e-07 59.3 143 34.3
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 3.0e-06 57.0 69 43.5


User provided reference genes

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