Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 0.0e+00 1203.7 617 100.0
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 0.0e+00 1127.5 617 93.5
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 0.0e+00 1109.7 617 91.6
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 0.0e+00 1108.2 617 91.6
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 0.0e+00 1100.1 617 90.3
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1097.8 617 90.3
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 0.0e+00 1097.0 617 90.3
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 0.0e+00 1088.9 617 89.6
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 0.0e+00 1087.0 617 89.6
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 0.0e+00 1086.2 617 89.3
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 0.0e+00 1085.5 617 89.1
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 0.0e+00 1084.7 617 89.0
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 0.0e+00 1078.2 617 88.7
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 0.0e+00 1076.6 617 89.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.4e-312 1072.8 627 86.9
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.4e-311 1069.7 625 87.4
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 9.3e-310 1066.2 617 88.0
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.7e-309 1064.7 617 88.0
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 3.5e-309 1064.3 615 87.6
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 6.0e-309 1063.5 684 83.0
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 2.3e-308 1061.6 615 87.6
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 5.1e-308 1060.4 618 87.9
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 5.1e-308 1060.4 617 87.4
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.9e-307 1058.5 617 87.8
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 9.0e-305 1049.7 618 86.7
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 1.2e-304 1049.3 617 87.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 7.6e-304 1046.6 616 87.3
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 9.9e-304 1046.2 617 86.5
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 2.2e-303 1045.0 617 86.5
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 3.8e-303 1044.3 642 84.3
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 4.2e-302 1040.8 617 85.9
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 5.5e-302 1040.4 617 86.5
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 1.8e-300 1035.4 617 84.8
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 7.4e-299 1030.0 617 84.3
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 9.6e-299 1029.6 617 84.4
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.7e-298 1027.7 616 84.9
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 8.2e-298 1026.5 618 84.5
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 3.1e-297 1024.6 656 82.0
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 2.6e-296 1021.5 620 83.9
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 1.0e-295 1019.6 617 83.6
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 1.1e-294 1016.1 619 83.5
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 4.2e-294 1014.2 619 85.1
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 4.6e-293 1010.7 617 84.1
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-292 1009.6 618 83.5
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.0e-292 1009.6 618 83.5
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 3.0e-292 1008.1 623 82.7
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.8e-289 998.8 618 82.4
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 5.3e-289 997.3 617 81.8
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 5.3e-289 997.3 616 82.1
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 6.9e-289 996.9 617 81.8
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.6e-288 995.0 617 81.7
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 4.5e-288 994.2 617 81.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 7.7e-288 993.4 617 81.8
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 5.0e-287 990.7 623 81.4
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 5.0e-287 990.7 752 71.5
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 9.4e-286 986.5 617 80.7
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 9.4e-286 986.5 614 81.1
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.6e-285 985.7 614 80.9
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 1.0e-284 983.0 617 80.7
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 1.4e-284 982.6 644 78.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 3.0e-284 981.5 610 81.3
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 6.7e-284 980.3 650 77.8
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.3e-283 978.0 611 81.0
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 2.8e-282 974.9 617 79.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.0e-280 968.8 629 79.2
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 1.1e-278 963.0 617 79.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 2.5e-278 961.8 542 89.9
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.2e-277 959.5 617 78.9
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 4.7e-277 957.6 617 78.8
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 2.3e-276 955.3 617 78.8
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 1.5e-275 952.6 615 79.2
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 4.4e-275 951.0 615 79.5
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.7e-274 949.1 615 78.2
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 6.3e-274 947.2 615 77.9
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.8e-271 937.9 517 92.3
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 2.1e-269 932.2 616 75.8
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 4.7e-269 931.0 575 82.1
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 5.7e-267 924.1 615 77.1
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.8e-265 919.1 632 75.9
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 3.1e-265 918.3 617 76.2
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 9.1e-265 916.8 617 76.3
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.2e-264 916.4 586 79.7
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 6.5e-263 910.6 639 74.5
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.1e-262 909.8 617 76.8
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.5e-262 908.7 517 87.8
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.4e-260 902.9 600 76.2
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.5e-259 899.4 623 76.1
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 7.5e-259 897.1 576 80.7
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 9.7e-259 896.7 615 74.1
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.2e-258 895.6 602 75.6
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.4e-249 865.5 513 87.3
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 2.8e-245 852.0 616 72.1
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.3e-244 849.0 616 70.1
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 2.3e-228 795.8 446 90.4
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 1.7e-223 779.6 552 75.2
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 5.1e-223 778.1 558 73.7
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 7.3e-222 774.2 615 61.5
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 3.6e-221 771.9 469 82.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.6e-208 729.9 620 59.0
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 4.4e-203 711.8 615 59.5
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 1.8e-188 663.3 648 52.2
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 9.6e-182 641.0 361 91.4
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 5.3e-172 608.6 341 92.7
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 2.5e-169 599.7 487 69.0
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 2.0e-166 590.1 360 84.4
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.3e-162 577.4 617 50.9
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.2e-157 560.1 391 76.7
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.2e-157 560.1 617 48.6
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 6.1e-144 515.4 364 72.0
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.0e-127 461.5 511 46.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 9.8e-126 454.9 598 46.0
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 5.4e-124 449.1 369 68.6
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 6.4e-117 425.6 281 81.5
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 5.1e-106 389.4 457 53.2
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.3e-79 299.7 175 85.7
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 9.9e-78 295.4 171 87.7
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.9e-73 281.2 188 71.3
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.0e-66 257.3 148 91.2
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.0e-62 244.6 142 88.7
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.2e-60 236.1 134 87.3
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 4.6e-51 206.8 117 87.2
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 3.9e-50 203.8 151 70.2
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 3.9e-50 203.8 122 85.2
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.7e-45 188.3 135 70.4
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 3.2e-44 184.1 104 91.3
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 4.7e-43 180.3 106 84.0
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 4.4e-41 173.7 105 80.0
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 3.7e-40 170.6 178 53.9
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 6.7e-34 149.8 94 81.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 7.0e-31 139.8 100 76.0
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.3e-29 135.6 73 93.2
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 1.1e-28 132.5 117 70.9
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 8.8e-26 122.9 106 53.8
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.3e-24 116.3 86 72.1
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 4.1e-23 114.0 76 76.3
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 2.5e-20 104.8 58 82.8
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.2e-20 104.0 54 92.6
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-19 102.4 59 78.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.2e-19 102.4 59 78.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.8e-18 96.7 59 71.2
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 6.8e-18 96.7 59 71.2
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.7e-16 92.0 50 80.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 4.3e-12 77.4 56 62.5
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.3e-12 76.6 43 83.7
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 9.5e-12 76.3 48 81.2
QL09p053081 Quercus lobata HOM05D002786 ORTHO05D030058 2.8e-11 74.7 43 90.7
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 1.8e-10 72.0 80 50.0
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.4e-09 67.4 44 61.4
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 2.9e-08 64.7 38 76.3
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 3.5e-06 57.8 34 79.4
MD05G1162600 Malus domestica HOM05D004954 ORTHO05D006267 4.6e-06 57.4 32 90.6
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 7.8e-06 56.6 33 81.8


User provided reference genes

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