Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p044388 Quercus lobata HOM05D007427 ORTHO05D006413 3.5e-25 118.6 128 100.0
QL09p044390 Quercus lobata HOM05D007427 ORTHO05D006413 1.7e-19 99.8 54 94.4
CiPaw.04G107800 Carya illinoinensis HOM05D007427 ORTHO05D006413 2.2e-16 89.4 52 82.7
Haze_24760 Corylus avellana HOM05D007427 ORTHO05D006413 1.9e-15 86.3 54 79.6
Rhsim13G0042300 Rhododendron simsii HOM05D007427 ORTHO05D006413 9.8e-12 73.9 48 70.8
CiPaw.03G152700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.3e-11 73.6 58 72.4
Duzib138G0914 Durio zibethinus HOM05D007427 ORTHO05D006413 2.8e-11 72.4 49 67.3
VMungo1383G3325 Vigna mungo HOM05D007427 ORTHO05D006413 6.3e-11 71.2 54 61.1
Phvul.001G168900 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 8.3e-11 70.9 54 59.3
Actinidia23744 Actinidia chinensis HOM05D007427 ORTHO05D006413 1.4e-10 70.1 55 65.5
Hma1.2p1_1858F.1_g305540 Hydrangea macrophylla HOM05D007427 ORTHO05D006413 1.4e-10 70.1 47 66.0
Lalb_Chr25g0289621 Lupinus albus HOM05D007427 ORTHO05D006413 1.8e-10 69.7 54 59.3
Ca_08774_v3 Cicer arietinum L. HOM05D007427 ORTHO05D006413 2.4e-10 69.3 54 61.1
Cpa.g.sc8.193 Carica papaya HOM05D007427 ORTHO05D006413 3.1e-10 68.9 51 64.7
COL.COLO4_28358 Corchorus olitorius HOM05D007427 ORTHO05D006413 3.1e-10 68.9 62 54.8
Duzib211G0080 Durio zibethinus HOM05D007427 ORTHO05D006413 3.1e-10 68.9 48 64.6
Sabra02G0191700 Salix brachista HOM05D007427 ORTHO05D006413 3.1e-10 68.9 68 52.9
Glyma.03G170900 Glycine max HOM05D007427 ORTHO05D006413 4.1e-10 68.6 56 58.9
arahy.Tifrunner.gnm1.ann1.KG3A2Z Arachis hypogaea HOM05D007427 ORTHO05D006413 7.0e-10 67.8 57 61.4
Lj1g0018605 Lotus japonicus HOM05D007427 ORTHO05D006413 7.0e-10 67.8 49 69.4
Potri.002G252400 Populus trichocarpa HOM05D007427 ORTHO05D006413 7.0e-10 67.8 64 56.2
ClCG09G009340 Citrullus lanatus HOM05D007427 ORTHO05D006413 9.1e-10 67.4 54 57.4
CiPaw.04G107700 Carya illinoinensis HOM05D007427 ORTHO05D006413 1.2e-09 67.0 56 64.3
Gohir.A07G154400 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.2e-09 67.0 52 63.5
Gohir.D07G160800 Gossypium hirsutum HOM05D007427 ORTHO05D006413 1.2e-09 67.0 52 63.5
Gorai.001G183700 Gossypium raimondii HOM05D007427 ORTHO05D006413 1.2e-09 67.0 52 63.5
Dinv19234 Davidia involucrata HOM05D007427 ORTHO05D006413 1.6e-09 66.6 49 63.3
Glyma.03G170800 Glycine max HOM05D007427 ORTHO05D006413 1.6e-09 66.6 56 58.9
Lalb_Chr01g0019331 Lupinus albus HOM05D007427 ORTHO05D006413 1.6e-09 66.6 54 55.6
Thecc.01G231600 Theobroma cacao HOM05D007427 ORTHO05D006413 2.7e-09 65.9 54 55.6
Ciclev10022672m.g Citrus clementina HOM05D007427 ORTHO05D006413 3.5e-09 65.5 72 50.0
Prupe.8G208000 Prunus persica HOM05D007427 ORTHO05D006413 5.9e-09 64.7 55 63.6
Nn3g19877 Nelumbo nucifera HOM05D007427 ORTHO05D006413 7.7e-09 64.3 53 66.0
Glyma.19G171900 Glycine max HOM05D007427 ORTHO05D006413 1.3e-08 63.5 56 55.4
TWI59G1478 Tripterygium wilfordii HOM05D007427 ORTHO05D006413 1.3e-08 63.5 50 66.0
TAR362G1030 Trochodendron aralioides HOM05D007427 ORTHO05D006413 1.3e-08 63.5 43 67.4
CANSAT01G2272 Cannabis sativa HOM05D007427 ORTHO05D006413 1.7e-08 63.2 59 57.6
Atru.chr5.1886 Acer truncatum HOM05D007427 ORTHO05D006413 2.2e-08 62.8 63 52.4
Lj1g0008336 Lotus japonicus HOM05D007427 ORTHO05D006413 2.9e-08 62.4 56 58.9
MD05G1181500 Malus domestica HOM05D007427 ORTHO05D006413 2.9e-08 62.4 55 61.8
CSS0029156 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 5.0e-08 61.6 59 61.0
CSS0036288 Camellia sinensis var. sinensis HOM05D007427 ORTHO05D006413 5.0e-08 61.6 59 61.0
Thecc.01G231700 Theobroma cacao HOM05D007427 ORTHO05D006413 5.0e-08 61.6 66 50.0
COL.COLO4_17317 Corchorus olitorius HOM05D007427 ORTHO05D006413 6.5e-08 61.2 52 57.7
MELO3C024163.2 Cucumis melo HOM05D007427 ORTHO05D006413 6.5e-08 61.2 54 53.7
CsaV3_7G025650 Cucumis sativus L. HOM05D007427 ORTHO05D006413 6.5e-08 61.2 54 53.7
Sed0020523 Sechium edule HOM05D007427 ORTHO05D006413 6.5e-08 61.2 54 53.7
Medtr7g099670 Medicago truncatula HOM05D007427 ORTHO05D006413 8.5e-08 60.8 55 58.2
Ciclev10022773m.g Citrus clementina HOM05D007427 ORTHO05D006413 1.5e-07 60.1 72 48.6
RcHm_v2.0_Chr6g0285411 Rosa chinensis HOM05D007427 ORTHO05D006413 2.5e-07 59.3 58 60.3
Nitab4.5_0001740g0060 Nicotiana tabacum HOM05D007427 ORTHO05D006413 5.5e-07 58.2 51 62.7
PGSC0003DMG400015809 Solanum tuberosum HOM05D014142 ORTHO05D006413 5.5e-07 58.2 50 64.0
Oeu052109.1 Olea europaea HOM05D038651 ORTHO05D006413 7.2e-07 57.8 49 63.3
Oeu052110.1 Olea europaea HOM05D038651 ORTHO05D006413 7.2e-07 57.8 49 63.3
Oeu052111.1 Olea europaea HOM05D038651 ORTHO05D006413 7.2e-07 57.8 49 63.3
Psat6g064560 Pisum sativum HOM05D007427 ORTHO05D006413 7.2e-07 57.8 55 56.4
MELO3C012793.2 Cucumis melo HOM05D007427 ORTHO05D006413 9.4e-07 57.4 56 51.8
CsaV3_7G025680 Cucumis sativus L. HOM05D007427 ORTHO05D006413 9.4e-07 57.4 53 50.9
Glyma.19G171800 Glycine max HOM05D007427 ORTHO05D006413 9.4e-07 57.4 56 51.8
Gohir.A07G154300 Gossypium hirsutum HOM05D007427 ORTHO05D006413 9.4e-07 57.4 70 44.3
Gohir.D07G160600 Gossypium hirsutum HOM05D007427 ORTHO05D006413 9.4e-07 57.4 70 44.3
MSTRG.21440 Avicennia marina HOM05D007427 ORTHO05D006413 1.2e-06 57.0 49 51.0
FvH4_2g19680 Fragaria vesca HOM05D007427 ORTHO05D006413 1.2e-06 57.0 59 59.3
FAN24G2151 Fragaria x ananassa HOM05D007427 ORTHO05D006413 1.2e-06 57.0 59 59.3
SalBow4G2254 Salvia bowleyana HOM05D007427 ORTHO05D006413 1.2e-06 57.0 55 54.5
FAN15G2923 Fragaria x ananassa HOM05D007427 ORTHO05D006413 1.6e-06 56.6 59 59.3
FAN27G1788 Fragaria x ananassa HOM05D007427 ORTHO05D006413 1.6e-06 56.6 59 59.3
Oeu017346.1 Olea europaea HOM05D032567 ORTHO05D036960 2.1e-06 56.2 42 61.9
Sopen09g025140 Solanum pennellii HOM05D014142 ORTHO05D006413 2.1e-06 56.2 54 63.0
ClCG09G009270 Citrullus lanatus HOM05D007427 ORTHO05D006413 2.7e-06 55.8 54 51.9
CsaV3_3G039490 Cucumis sativus L. HOM05D007427 ORTHO05D006413 2.7e-06 55.8 59 50.8
Sopen09g025130 Solanum pennellii HOM05D014142 ORTHO05D006413 3.6e-06 55.5 54 63.0
Cpa.g.sc8.192 Carica papaya HOM05D017908 ORTHO05D020344 4.7e-06 55.1 45 62.2
Glyma.10G043100 Glycine max HOM05D007427 ORTHO05D006413 6.1e-06 54.7 55 58.2
Phvul.007G156700 Phaseolus vulgaris HOM05D007427 ORTHO05D006413 6.1e-06 54.7 54 55.6
Potri.002G252200 Populus trichocarpa HOM05D007427 ORTHO05D006413 6.1e-06 54.7 39 59.0
Medtr1g069085 Medicago truncatula HOM05D007427 ORTHO05D006413 8.0e-06 54.3 55 58.2
SGA_v2.0_scaffold42G16152 Striga asiatica HOM05D007427 ORTHO05D006413 8.0e-06 54.3 54 57.4


User provided reference genes

Program Settings