Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p043802 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1268.8 620 100.0
QL09p043508 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1230.7 620 97.3
QL07p009176 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1229.2 620 97.1
QL09p043653 Quercus lobata HOM05D009210 ORTHO05D010367 0.0e+00 1184.9 620 93.7
QL09p043642 Quercus lobata HOM05D009210 ORTHO05D010367 7.9e-301 1036.6 583 90.1
Cfa002512 Carpinus fangiana HOM05D009210 ORTHO05D010367 3.0e-138 496.5 596 49.0
QL09p043548 Quercus lobata HOM05D002769 ORTHO05D010367 6.4e-101 372.5 608 42.3
Haze_24738 Corylus avellana HOM05D009210 ORTHO05D010367 1.5e-89 334.7 288 61.1
Manes.13G042500 Manihot esculenta HOM05D009210 ORTHO05D010367 1.4e-87 328.2 642 36.8
TWI59G1397 Tripterygium wilfordii HOM05D009210 ORTHO05D010367 1.1e-81 308.5 661 35.7
Ciclev10019870m.g Citrus clementina HOM05D009210 ORTHO05D010367 2.9e-77 293.9 455 39.3
Duzib211G0683 Durio zibethinus HOM05D009210 ORTHO05D010367 5.7e-65 253.1 641 32.6
Thecc.01G245200 Theobroma cacao HOM05D009210 ORTHO05D010367 5.9e-62 243.0 486 36.6
Lj1A79G19 Lonicera japonica HOM05D009210 ORTHO05D010367 1.4e-60 238.4 648 33.0
Actinidia30107 Actinidia chinensis HOM05D009210 ORTHO05D010367 1.1e-52 212.2 651 28.9
Prupe.8G209900 Prunus persica HOM05D016859 ORTHO05D010367 1.8e-50 204.9 507 30.6
MELO3C024146.2 Cucumis melo HOM05D026148 ORTHO05D010367 4.0e-50 203.8 523 34.0
Dinv19248 Davidia involucrata HOM05D009210 ORTHO05D010367 8.2e-48 196.1 365 36.7
Cpa.g.sc8.212 Carica papaya HOM05D009210 ORTHO05D010367 3.5e-46 190.7 437 31.6
Atru.chr5.1922 Acer truncatum HOM05D009210 ORTHO05D010367 7.2e-44 183.0 427 33.5
ClCG09G009440 Citrullus lanatus HOM05D026148 ORTHO05D010367 4.0e-42 177.2 610 29.3
COL.COLO4_08165 Corchorus olitorius HOM05D009210 ORTHO05D010367 1.2e-41 175.6 685 27.9
Gohir.A07G202550 Gossypium hirsutum HOM05D009210 ORTHO05D010367 1.5e-41 175.3 491 31.6
FAN24G1655 Fragaria x ananassa HOM05D016859 ORTHO05D010367 3.4e-41 174.1 753 25.9
CsaV3_7G025420 Cucumis sativus L. HOM05D026148 ORTHO05D010367 9.8e-41 172.6 514 31.5
Sed0006753 Sechium edule HOM05D026148 ORTHO05D010367 2.4e-39 167.9 594 29.1
CiPaw.04G192300 Carya illinoinensis HOM05D009210 ORTHO05D010367 3.1e-39 167.5 207 49.3
FAN27G2643 Fragaria x ananassa HOM05D016859 ORTHO05D010367 3.1e-39 167.5 814 26.2
Gorai.001G235700 Gossypium raimondii HOM05D009210 ORTHO05D010367 5.4e-39 166.8 491 30.5
Nn3g19852 Nelumbo nucifera HOM05D009210 ORTHO05D010367 7.7e-38 162.9 707 26.3
FvH4_2g19950 Fragaria vesca HOM05D016859 ORTHO05D010367 1.3e-37 162.2 395 32.4
MD10G1171500 Malus domestica HOM05D016859 ORTHO05D010367 3.8e-37 160.6 381 33.3
FAN15G1208 Fragaria x ananassa HOM05D016859 ORTHO05D010367 2.1e-35 154.8 421 30.6
RcHm_v2.0_Chr6g0285611 Rosa chinensis HOM05D016859 ORTHO05D010367 3.6e-35 154.1 428 32.2
Oeu052100.2 Olea europaea HOM05D013334 ORTHO05D015998 2.3e-34 151.4 664 28.6
CSS0048272 Camellia sinensis var. sinensis HOM05D009210 ORTHO05D010367 1.2e-33 149.1 510 27.8
Gohir.D07G208750 Gossypium hirsutum HOM05D009210 ORTHO05D010367 2.8e-32 144.4 363 32.0
Lj5g0020428 Lotus japonicus HOM05D014010 ORTHO05D010367 1.7e-29 135.2 724 25.4
CANSAT01G1047 Cannabis sativa HOM05D009210 ORTHO05D010367 7.3e-28 129.8 361 32.1
MSTRG.17532 Avicennia marina HOM05D013334 ORTHO05D015998 3.0e-26 124.4 617 27.4
Phvul.007G155700 Phaseolus vulgaris HOM05D014010 ORTHO05D010367 4.0e-26 124.0 584 24.8
Lalb_Chr02g0152931 Lupinus albus HOM05D014010 ORTHO05D010367 8.3e-24 116.3 303 32.0
QL09p043739 Quercus lobata HOM05D002769 ORTHO05D003160 8.3e-24 116.3 69 82.6
VMungo0720G0709 Vigna mungo HOM05D014010 ORTHO05D010367 2.7e-22 111.3 729 24.1
TPR.G25869 Trifolium pratense HOM05D014010 ORTHO05D010367 1.0e-21 109.4 241 34.0
Nitab4.5_0002330g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 5.6e-20 103.6 531 28.4
Hund18342 Selenicereus undatus HOM05D017699 ORTHO05D019543 7.3e-20 103.2 204 39.7
arahy.Tifrunner.gnm1.ann1.201IN6 Arachis hypogaea HOM05D014010 ORTHO05D010367 1.2e-19 102.4 380 27.4
Psat6g065120 Pisum sativum HOM05D014010 ORTHO05D010367 1.0e-18 99.4 277 29.6
Aqoxy5G00051 Aquilegia oxysepala HOM05D024193 ORTHO05D010367 2.3e-18 98.2 545 26.4
Glyma.13G129600 Glycine max HOM05D014010 ORTHO05D010367 6.8e-18 96.7 239 31.8
Aa31LG8G17240 Aethionema arabicum HOM05D012015 ORTHO05D014750 5.8e-17 93.6 495 26.3
PSO764G0241 Papaver somniferum HOM05D024193 ORTHO05D010367 5.8e-17 93.6 303 30.4
Medtr1g069195 Medicago truncatula HOM05D014010 ORTHO05D010367 7.5e-17 93.2 229 33.6
SGA_v2.0_scaffold3G01596 Striga asiatica HOM05D009210 ORTHO05D015998 1.3e-16 92.4 456 27.6
Duzib133G1530 Durio zibethinus HOM05D009210 ORTHO05D010367 1.7e-16 92.0 251 31.9
Nitab4.5_0001557g0020 Nicotiana tabacum HOM05D013334 ORTHO05D015998 3.7e-16 90.9 463 27.0
MBI10_g16802_MAGBIO Magnolia biondii HOM05D024193 ORTHO05D010367 3.2e-15 87.8 503 24.3
SalBow6G1944 Salvia bowleyana HOM05D013334 ORTHO05D010367 1.2e-14 85.9 274 31.8
Ca_09627_v3 Cicer arietinum L. HOM05D014010 ORTHO05D010367 1.6e-14 85.5 255 30.6
Sopen06g035070 Solanum pennellii HOM05D013334 ORTHO05D015998 6.0e-14 83.6 592 25.5
CAN.G771.49 Capsicum annuum HOM05D013334 ORTHO05D015998 1.7e-13 82.0 482 26.6
AT2G20250 Arabidopsis thaliana HOM05D012015 ORTHO05D014750 2.3e-13 81.6 494 27.5
HanXRQChr13g0408971 Helianthus annuus HOM05D040207 ORTHO05D010367 2.3e-13 81.6 425 26.4
Sp3g33480 Schrenkiella parvula HOM05D012015 ORTHO05D014750 2.3e-13 81.6 505 26.7
MD10G1171600 Malus domestica HOM05D016859 ORTHO05D010367 3.0e-13 81.3 156 39.7
THA.LOC104814711 Tarenaya hassleriana HOM05D012015 ORTHO05D014750 8.6e-13 79.7 246 30.9
Atru.chr5.1921 Acer truncatum HOM05D009210 ORTHO05D010367 1.1e-12 79.3 184 32.6
A09p12760 Brassica napus HOM05D012015 ORTHO05D014750 1.1e-12 79.3 509 25.5
Thhalv10001946m.g Eutrema salsugineum HOM05D012015 ORTHO05D014750 1.5e-12 79.0 301 28.9
BraA09t36920Z Brassica rapa HOM05D012015 ORTHO05D014750 4.3e-12 77.4 520 25.0
CARHR110740 Cardamine hirsuta HOM05D012015 ORTHO05D014750 5.6e-12 77.0 442 25.6
AL3G47840 Arabidopsis lyrata HOM05D012015 ORTHO05D014750 6.2e-11 73.6 524 26.1
PSO832G3586 Papaver somniferum HOM05D024193 ORTHO05D010367 1.1e-10 72.8 144 35.4
DCAR_000542 Daucus carota HOM05D009210 ORTHO05D010367 1.8e-10 72.0 214 33.6
Carub.0003s3458 Capsella rubella HOM05D012015 ORTHO05D014750 6.8e-10 70.1 322 26.4
C09p15130 Brassica napus HOM05D012015 ORTHO05D014750 1.5e-09 68.9 531 24.9
BcaC04g22814 Brassica carinata HOM05D012015 ORTHO05D014750 3.4e-09 67.8 544 25.0
PGR044G0436 Punica granatum HOM05D009210 ORTHO05D010367 9.8e-09 66.2 158 32.9
Solyc06g083670.4 Solanum lycopersicum HOM05D013334 ORTHO05D015998 2.9e-08 64.7 394 26.1
GSVIVG01028482001 Vitis vinifera HOM05D009210 ORTHO05D010367 4.9e-08 63.9 63 54.0
BcaNung04097 Brassica carinata HOM05D012015 ORTHO05D014750 8.3e-08 63.2 481 24.9
ECA236G3347 Erigeron canadensis HOM05D040207 ORTHO05D010367 1.1e-07 62.8 258 28.7
AUR62008852 Chenopodium quinoa HOM05D017699 ORTHO05D019543 3.5e-06 57.8 305 27.5


User provided reference genes

Program Settings