Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p042418 Quercus lobata HOM05D006210 ORTHO05D007510 7.9e-219 763.5 380 100.0
CiPaw.03G272200 Carya illinoinensis HOM05D006210 ORTHO05D007510 2.3e-173 612.5 380 81.3
Cfa002496 Carpinus fangiana HOM05D006210 ORTHO05D007510 8.9e-162 573.9 346 85.0
GSVIVG01028451001 Vitis vinifera HOM05D006210 ORTHO05D007510 5.4e-159 564.7 380 75.5
Ciclev10020743m.g Citrus clementina HOM05D006210 ORTHO05D007510 5.6e-156 554.7 381 74.5
Potri.002G255300 Populus trichocarpa HOM05D006210 ORTHO05D007510 3.1e-154 548.9 381 74.0
Prupe.1G573100 Prunus persica HOM05D006210 ORTHO05D007510 1.2e-153 547.0 381 71.7
Thecc.01G247800 Theobroma cacao HOM05D006210 ORTHO05D007510 7.6e-153 544.3 379 71.8
Rhsim13G0040700 Rhododendron simsii HOM05D006210 ORTHO05D007510 2.4e-151 539.3 379 69.1
Actinidia30115 Actinidia chinensis HOM05D006210 ORTHO05D007510 1.0e-149 533.9 380 71.6
Gohir.D11G140400 Gossypium hirsutum HOM05D006210 ORTHO05D007510 1.0e-149 533.9 379 71.5
Hma1.2p1_2051F.1_g312580 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 1.3e-149 533.5 380 72.1
Gohir.A11G134300 Gossypium hirsutum HOM05D006210 ORTHO05D007510 2.3e-149 532.7 379 71.5
TAR362G1053 Trochodendron aralioides HOM05D006210 ORTHO05D007510 3.0e-149 532.3 380 70.3
Dinv43053 Davidia involucrata HOM05D006210 ORTHO05D007510 1.5e-148 530.0 357 76.8
CANSAT01G0995 Cannabis sativa HOM05D006210 ORTHO05D007510 5.6e-148 528.1 380 70.3
MELO3C012833.2 Cucumis melo HOM05D006210 ORTHO05D007510 1.6e-147 526.6 380 68.9
TWI18G1043 Tripterygium wilfordii HOM05D006210 ORTHO05D007510 4.7e-147 525.0 380 71.3
MBI10_g26060_MAGBIO Magnolia biondii HOM05D006210 ORTHO05D007510 8.1e-147 524.2 380 68.4
Atru.chr5.2084_Atru.chr5.2085 Acer truncatum HOM05D006210 ORTHO05D007510 1.4e-146 523.5 380 71.8
Duzib138G0227 Durio zibethinus HOM05D006210 ORTHO05D007510 1.4e-146 523.5 379 69.9
CsaV3_3G028470 Cucumis sativus L. HOM05D006210 ORTHO05D007510 2.4e-146 522.7 380 68.9
Manes.13G038600 Manihot esculenta HOM05D006210 ORTHO05D007510 3.1e-146 522.3 380 69.2
TPR.G28794 Trifolium pratense HOM05D006210 ORTHO05D007510 5.2e-146 521.5 380 71.3
SalBow5G1930 Salvia bowleyana HOM05D006210 ORTHO05D007510 1.5e-145 520.0 379 67.5
Sed0025577 Sechium edule HOM05D006210 ORTHO05D007510 1.5e-145 520.0 380 68.2
Lj1C76G7 Lonicera japonica HOM05D006210 ORTHO05D007510 3.4e-145 518.8 380 69.2
CSS0033273 Camellia sinensis var. sinensis HOM05D006210 ORTHO05D007510 4.4e-145 518.5 381 69.6
Nn1g03023 Nelumbo nucifera HOM05D006210 ORTHO05D007510 2.9e-144 515.8 379 67.0
Phvul.007G154100 Phaseolus vulgaris HOM05D006210 ORTHO05D007510 1.9e-143 513.1 380 69.7
Lalb_Chr21g0314151 Lupinus albus HOM05D006210 ORTHO05D007510 4.2e-143 511.9 381 69.6
PGSC0003DMG400007719 Solanum tuberosum HOM05D006210 ORTHO05D007510 3.5e-142 508.8 380 68.2
Glyma.13G127800 Glycine max HOM05D006210 ORTHO05D007510 4.6e-142 508.4 379 69.4
Sopen09g025510 Solanum pennellii HOM05D006210 ORTHO05D007510 1.0e-141 507.3 379 67.3
Eucgr.A01369 Eucalyptus grandis HOM05D006210 ORTHO05D007510 1.3e-141 506.9 380 68.7
FvH4_2g20260 Fragaria vesca HOM05D006210 ORTHO05D007510 3.0e-141 505.8 380 68.4
Oeu058104.1 Olea europaea HOM05D006210 ORTHO05D007510 1.5e-140 503.4 379 66.8
Haze_24722 Corylus avellana HOM05D006210 ORTHO05D007510 2.5e-140 502.7 371 72.5
PGR031G0293 Punica granatum HOM05D006210 ORTHO05D007510 1.6e-139 500.0 379 67.3
Ca_09640_v3 Cicer arietinum L. HOM05D006210 ORTHO05D007510 2.8e-139 499.2 379 68.9
Aqoxy5G00102 Aquilegia oxysepala HOM05D006210 ORTHO05D007510 3.6e-139 498.8 381 66.7
Cpa.g.sc87.54 Carica papaya HOM05D006210 ORTHO05D007510 8.1e-139 497.7 424 63.2
Lj5g0001397 Lotus japonicus HOM05D006210 ORTHO05D007510 8.1e-139 497.7 381 68.5
ECA247G1810 Erigeron canadensis HOM05D006210 ORTHO05D007510 6.9e-138 494.6 381 67.5
ClCG00G001600 Citrullus lanatus HOM05D006210 ORTHO05D007510 1.2e-137 493.8 376 67.3
Glyma.10G040900 Glycine max HOM05D006210 ORTHO05D007510 1.2e-137 493.8 379 67.0
BraA09t42139Z Brassica rapa HOM05D006210 ORTHO05D007510 1.5e-137 493.4 384 65.9
MSTRG.22887 Avicennia marina HOM05D006210 ORTHO05D007510 7.6e-137 491.1 380 65.8
PSO210G7683 Papaver somniferum HOM05D006210 ORTHO05D007510 1.3e-136 490.3 383 66.3
Psat6g064440 Pisum sativum HOM05D006210 ORTHO05D007510 1.7e-136 490.0 380 68.2
BolC8t52775H Brassica oleracea HOM05D006210 ORTHO05D007510 2.9e-136 489.2 388 65.2
PSO170G6901 Papaver somniferum HOM05D006210 ORTHO05D007510 3.8e-136 488.8 383 66.3
Aa31LG1G20710 Aethionema arabicum HOM05D006210 ORTHO05D007510 4.9e-136 488.4 376 65.4
Sabra02G0194000 Salix brachista HOM05D006210 ORTHO05D007510 6.4e-136 488.0 387 68.5
COL.COLO4_37372 Corchorus olitorius HOM05D006210 ORTHO05D007510 1.1e-135 487.3 382 64.7
THA.LOC104801120 Tarenaya hassleriana HOM05D006210 ORTHO05D007510 1.1e-135 487.3 377 66.6
Sp1g02950 Schrenkiella parvula HOM05D006210 ORTHO05D007510 3.2e-135 485.7 381 64.6
Migut.O00355 Erythranthe guttata HOM05D006210 ORTHO05D007510 1.0e-133 480.7 379 64.1
HanXRQChr10g0280241 Helianthus annuus HOM05D006210 ORTHO05D007510 3.0e-133 479.2 381 65.4
FAN27G1100 Fragaria x ananassa HOM05D006210 ORTHO05D007510 5.1e-133 478.4 380 64.7
Hund18317 Selenicereus undatus HOM05D006210 ORTHO05D007510 8.7e-133 477.6 380 64.5
VMungo0720G2771 Vigna mungo HOM05D006210 ORTHO05D007510 1.9e-132 476.5 379 66.5
AT1G04130 Arabidopsis thaliana HOM05D006210 ORTHO05D007510 2.5e-132 476.1 379 63.1
Thhalv10008004m.g Eutrema salsugineum HOM05D006210 ORTHO05D007510 4.3e-132 475.3 379 63.3
AL1G13730 Arabidopsis lyrata HOM05D006210 ORTHO05D007510 1.3e-131 473.8 379 62.8
BcaC07g42211 Brassica carinata HOM05D006210 ORTHO05D007510 1.6e-131 473.4 379 63.1
Carub.0001s0328 Capsella rubella HOM05D006210 ORTHO05D007510 1.6e-131 473.4 379 62.8
CARHR003480 Cardamine hirsuta HOM05D006210 ORTHO05D007510 4.8e-131 471.9 379 62.5
A09p68040 Brassica napus HOM05D006210 ORTHO05D007510 6.9e-130 468.0 379 63.1
unitig_22.g6263 Utricularia gibba HOM05D006210 ORTHO05D007510 3.4e-129 465.7 378 61.9
Nitab4.5_0000385g0060 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.9e-127 459.9 380 62.6
C08p52480 Brassica napus HOM05D006210 ORTHO05D007510 7.1e-127 458.0 379 60.9
ClCG07G001460 Citrullus lanatus HOM05D006210 ORTHO05D007510 2.1e-126 456.4 401 61.1
Ah.15g091520 Amaranthus hybridus HOM05D006210 ORTHO05D007510 8.2e-123 444.5 379 59.1
SGA_v2.0_scaffold382G50403 Striga asiatica HOM05D006210 ORTHO05D007510 1.1e-122 444.1 346 62.1
arahy.Tifrunner.gnm1.ann1.J3R5E0 Arachis hypogaea HOM05D006210 ORTHO05D007510 9.0e-122 441.0 370 64.1
AUR62025420 Chenopodium quinoa HOM05D006210 ORTHO05D007510 7.6e-121 438.0 380 59.7
arahy.Tifrunner.gnm1.ann1.6WB007 Arachis hypogaea HOM05D006210 ORTHO05D007510 7.9e-118 427.9 379 60.2
BcaC07g42208 Brassica carinata HOM05D006210 ORTHO05D007510 2.3e-117 426.4 383 58.5
SEGI_04783 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 1.1e-114 417.5 381 55.6
Peaxi162Scf00043g00235 Petunia axillaris HOM05D006210 ORTHO05D007510 3.1e-114 416.0 345 61.2
Cc01_g17680 Coffea canephora HOM05D006210 ORTHO05D007510 1.7e-112 410.2 383 56.4
arahy.Tifrunner.gnm1.ann1.GM89QY Arachis hypogaea HOM05D006210 ORTHO05D007510 9.4e-111 404.4 365 59.5
Zm00001eb057360 Zea mays HOM05D006210 ORTHO05D007510 1.4e-109 400.6 391 52.7
ATR0723G059 Amborella trichopoda HOM05D006210 ORTHO05D007510 5.5e-103 378.6 379 53.0
AUR62008821 Chenopodium quinoa HOM05D006210 ORTHO05D007510 6.1e-102 375.2 380 53.9
MD10G1174300 Malus domestica HOM05D006210 ORTHO05D007510 7.4e-100 368.2 240 77.5
DCAR_000557 Daucus carota HOM05D006210 ORTHO05D007510 2.4e-98 363.2 248 73.8
CAN.G119.7 Capsicum annuum HOM05D006210 ORTHO05D007510 9.1e-98 361.3 242 75.2
FAN24G1818 Fragaria x ananassa HOM05D006210 ORTHO05D007510 8.5e-96 354.8 246 72.8
Hma1.2p1_2051F.1_g312575 Hydrangea macrophylla HOM05D006210 ORTHO05D007510 2.5e-95 353.2 240 75.8
Prupe.8G213100 Prunus persica HOM05D006210 ORTHO05D007510 3.2e-95 352.8 379 55.1
arahy.Tifrunner.gnm1.ann1.5C4SPF Arachis hypogaea HOM05D006210 ORTHO05D007510 1.6e-94 350.5 245 70.2
RcHm_v2.0_Chr6g0286041 Rosa chinensis HOM05D006210 ORTHO05D007510 6.1e-94 348.6 241 73.9
Solyc09g064380.3 Solanum lycopersicum HOM05D006210 ORTHO05D007510 8.0e-94 348.2 242 73.6
Mapoly0012s0146 Marchantia polymorpha HOM05D006210 ORTHO05D007510 2.2e-88 330.1 380 47.4
HPP92_025825 Vanilla planifolia HOM05D006210 ORTHO05D007510 2.9e-88 329.7 380 49.7
Lsat_1_v5_gn_9_11700 Lactuca sativa HOM05D006210 ORTHO05D007510 4.7e-86 322.4 294 61.9
Gorai.007G150600 Gossypium raimondii HOM05D006210 ORTHO05D007510 6.7e-85 318.5 356 51.7
Pp3c19_11990 Physcomitrium patens HOM05D006210 ORTHO05D007510 1.5e-84 317.4 380 45.8
Nitab4.5_0000392g0100 Nicotiana tabacum HOM05D006210 ORTHO05D007510 1.2e-78 297.7 324 50.9
EL10Ac7g17713 Beta vulgaris HOM05D006210 ORTHO05D007510 2.1e-78 297.0 240 63.8
AagrBONN_evm.TU.Sc2ySwM_228.4049__4050 Anthoceros agrestis HOM05D006210 ORTHO05D007510 1.8e-77 293.9 314 47.8
CBR_g36953 Chara braunii HOM05D006210 ORTHO05D007510 8.3e-59 231.9 321 42.1
Sc05g0002800 Simmondsia chinensis HOM05D006210 ORTHO05D007510 4.6e-57 226.1 380 37.9
Os03g0750100 Oryza sativa ssp. japonica HOM05D006210 ORTHO05D007510 7.8e-57 225.3 280 46.1
MD10G1174200 Malus domestica HOM05D006210 ORTHO05D007510 3.7e-51 206.5 128 76.6
DCAR_000556 Daucus carota HOM05D006210 ORTHO05D007510 2.0e-44 184.1 128 69.5
RcHm_v2.0_Chr6g0286031 Rosa chinensis HOM05D006210 ORTHO05D007510 2.2e-43 180.6 129 69.0
PRCOL_00004543 Prasinoderma coloniale HOM05D006210 ORTHO05D007510 1.9e-42 177.6 385 33.0
Hma1.2p1_0559F.1_g178660 Hydrangea macrophylla HOM05D000705 ORTHO05D007510 7.1e-42 175.6 105 81.9
HanXRQChr01g0013201 Helianthus annuus HOM05D006210 ORTHO05D007510 3.0e-40 170.2 127 69.3
CAN.G119.6 Capsicum annuum HOM05D006210 ORTHO05D007510 5.1e-40 169.5 126 61.9
MCO01G218 Micromonas commoda HOM05D006210 ORTHO05D007510 1.2e-38 164.9 390 33.1
Cre08.g375650 Chlamydomonas reinhardtii HOM05D006210 ORTHO05D007510 2.0e-36 157.5 357 31.7
vmacro02716 Vaccinium macrocarpon HOM05D006210 ORTHO05D007510 4.8e-30 136.3 98 64.3
Actinidia37561 Actinidia chinensis HOM05D006210 ORTHO05D007510 6.9e-29 132.5 111 63.1
MD05G1186500 Malus domestica HOM05D006210 ORTHO05D007510 7.6e-28 129.0 90 71.1
MD05G1186300 Malus domestica HOM05D006210 ORTHO05D007510 9.3e-26 122.1 97 62.9
Sc05g0002820 Simmondsia chinensis HOM05D006210 ORTHO05D007510 8.7e-24 115.5 105 58.1
TAR349G0001 Trochodendron aralioides HOM05D006210 ORTHO05D007510 2.5e-23 114.0 187 39.6
Cfa024968 Carpinus fangiana HOM05D006210 ORTHO05D007510 4.0e-13 80.1 240 30.4
SEGI_25119 Sequoiadendron giganteum HOM05D006210 ORTHO05D007510 2.6e-12 77.4 49 65.3
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 1.0e-11 75.5 70 50.0
SMO196G0213 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 2.5e-10 70.9 99 41.4
SMO234G0002 Selaginella moellendorffii HOM05D006210 ORTHO05D007510 7.1e-10 69.3 125 36.8
SalBow2G2341 Salvia bowleyana HOM05D000371 ORTHO05D001484 8.7e-08 62.4 182 28.0
Medtr2g078020 Medicago truncatula HOM05D000868 ORTHO05D000711 3.3e-07 60.5 116 36.2
AT1G62740 Arabidopsis thaliana HOM05D002462 ORTHO05D002893 4.3e-07 60.1 126 34.1
Cpa.g.sc617.3 Carica papaya HOM05D001789 ORTHO05D001755 9.6e-07 58.9 131 35.1
Ca_03995_v3 Cicer arietinum L. HOM05D000868 ORTHO05D000711 1.3e-06 58.5 116 33.6
Ciclev10030128m.g Citrus clementina HOM05D005592 ORTHO05D006067 1.3e-06 58.5 94 36.2
AL2G13050 Arabidopsis lyrata HOM05D002462 ORTHO05D002893 1.6e-06 58.2 129 32.6
THA.LOC104813028 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 1.6e-06 58.2 106 34.9
SMO203G0114 Selaginella moellendorffii HOM05D000371 ORTHO05D001484 2.1e-06 57.8 195 31.8
Aqoxy6G02543 Aquilegia oxysepala HOM05D000371 ORTHO05D001484 2.8e-06 57.4 188 27.1
THA.LOC104814751 Tarenaya hassleriana HOM05D001916 ORTHO05D003272 3.7e-06 57.0 108 35.2
TPR.G30901 Trifolium pratense HOM05D000868 ORTHO05D000711 3.7e-06 57.0 116 34.5
SEGI_21200 Sequoiadendron giganteum HOM05D001789 ORTHO05D001755 4.8e-06 56.6 129 34.9
arahy.Tifrunner.gnm1.ann1.8FW391 Arachis hypogaea HOM05D005592 ORTHO05D006067 6.2e-06 56.2 106 34.0
arahy.Tifrunner.gnm1.ann1.IE8JUR Arachis hypogaea HOM05D005592 ORTHO05D006067 6.2e-06 56.2 106 34.0
Peaxi162Scf00282g00618 Petunia axillaris HOM05D001789 ORTHO05D001755 8.2e-06 55.8 144 34.0


User provided reference genes

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