Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p042102 Quercus lobata HOM05D003598 ORTHO05D004198 2.1e-62 242.3 127 100.0
QL02p009504 Quercus lobata HOM05D003598 ORTHO05D004198 6.2e-43 177.6 134 74.6
QL09p042139 Quercus lobata HOM05D003598 ORTHO05D004198 2.1e-35 152.5 114 73.7
CiPaw.08G060100 Carya illinoinensis HOM05D003598 ORTHO05D004198 8.7e-29 130.6 141 54.6
Haze_22545 Corylus avellana HOM05D003598 ORTHO05D004198 1.6e-27 126.3 130 56.9
CiPaw.07G157700 Carya illinoinensis HOM05D003598 ORTHO05D004198 2.8e-27 125.6 141 53.2
Cfa013868 Carpinus fangiana HOM05D003598 ORTHO05D004198 1.1e-26 123.6 130 55.4
QL04p035400 Quercus lobata HOM05D000021 ORTHO05D000010 4.5e-25 118.2 84 76.2
QL02p006829 Quercus lobata HOM05D006704 ORTHO05D004198 3.5e-22 108.6 83 72.3
Potri.005G198900 Populus trichocarpa HOM05D003598 ORTHO05D004198 6.0e-22 107.8 137 47.4
TWI53G1744 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 1.3e-21 106.7 137 46.0
Atru.chr9.2066 Acer truncatum HOM05D003598 ORTHO05D004198 1.8e-21 106.3 137 47.4
TWI77G0411 Tripterygium wilfordii HOM05D003598 ORTHO05D004198 2.5e-20 102.4 137 48.9
Ciclev10032368m.g Citrus clementina HOM05D003598 ORTHO05D004198 3.3e-20 102.1 136 47.1
Manes.01G073300 Manihot esculenta HOM05D003598 ORTHO05D004198 4.3e-20 101.7 136 47.8
Sabra02G0050100 Salix brachista HOM05D003598 ORTHO05D004198 5.7e-20 101.3 136 46.3
Potri.002G062200 Populus trichocarpa HOM05D003598 ORTHO05D004198 1.6e-19 99.8 137 46.0
Ca_14027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 8.2e-19 97.4 132 44.7
MD16G1000500 Malus domestica HOM05D003598 ORTHO05D004198 2.4e-18 95.9 133 45.9
Prupe.1G345400 Prunus persica HOM05D003598 ORTHO05D004198 2.4e-18 95.9 133 43.6
Medtr4g108000 Medicago truncatula HOM05D003598 ORTHO05D004198 5.3e-18 94.7 125 44.8
Ca_03027_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 6.9e-18 94.4 132 43.9
MD13G1007600 Malus domestica HOM05D003598 ORTHO05D004198 9.0e-18 94.0 133 45.9
Phvul.L003737 Phaseolus vulgaris HOM05D003598 ORTHO05D004198 2.0e-17 92.8 138 44.9
GSVIVG01010181001 Vitis vinifera HOM05D003598 ORTHO05D004198 2.6e-17 92.4 137 47.4
Medtr4g074480 Medicago truncatula HOM05D003598 ORTHO05D004198 4.5e-17 91.7 125 44.0
RcHm_v2.0_Chr4g0446451 Rosa chinensis HOM05D003598 ORTHO05D004198 2.2e-16 89.4 129 44.2
FvH4_4g36731 Fragaria vesca HOM05D003598 ORTHO05D004198 2.9e-16 89.0 124 45.2
Lj3g0003654 Lotus japonicus HOM05D003598 ORTHO05D004198 2.9e-16 89.0 130 46.2
Glyma.12G141400 Glycine max HOM05D003598 ORTHO05D004198 3.8e-16 88.6 120 47.5
Dinv05241 Davidia involucrata HOM05D003598 ORTHO05D004198 6.5e-16 87.8 137 43.1
Glyma.11G103000 Glycine max HOM05D003598 ORTHO05D004198 6.5e-16 87.8 140 42.1
TPR.G32324 Trifolium pratense HOM05D003598 ORTHO05D004198 6.5e-16 87.8 123 46.3
Sabra05G0151500 Salix brachista HOM05D003598 ORTHO05D004198 8.5e-16 87.4 173 36.4
CANSAT64G1690 Cannabis sativa HOM05D003598 ORTHO05D004198 1.9e-15 86.3 134 44.8
PGR042G0762 Punica granatum HOM05D003598 ORTHO05D004198 1.9e-15 86.3 131 42.0
Dinv32105 Davidia involucrata HOM05D003598 ORTHO05D004198 2.5e-15 85.9 137 43.8
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 2.5e-15 85.9 130 43.1
Eucgr.J00852 Eucalyptus grandis HOM05D003598 ORTHO05D004198 3.2e-15 85.5 127 43.3
PSO782G0946 Papaver somniferum HOM05D003598 ORTHO05D004198 5.5e-15 84.7 136 44.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 7.2e-15 84.3 129 43.4
CsaV3_3G031510 Cucumis sativus L. HOM05D003598 ORTHO05D004198 9.4e-15 84.0 130 43.1
PSO063G0008 Papaver somniferum HOM05D003598 ORTHO05D004198 9.4e-15 84.0 136 42.6
Actinidia11173 Actinidia chinensis HOM05D003598 ORTHO05D004198 3.6e-14 82.0 137 42.3
MELO3C024034.2 Cucumis melo HOM05D003598 ORTHO05D004198 6.1e-14 81.3 130 45.4
Psat7g173800 Pisum sativum HOM05D003598 ORTHO05D004198 6.1e-14 81.3 136 38.2
TAR371G1198 Trochodendron aralioides HOM05D003598 ORTHO05D004198 6.1e-14 81.3 130 46.9
arahy.Tifrunner.gnm1.ann1.01A9SY Arachis hypogaea HOM05D003598 ORTHO05D004198 1.8e-13 79.7 133 42.1
arahy.Tifrunner.gnm1.ann1.Y4R7AD Arachis hypogaea HOM05D003598 ORTHO05D004198 1.8e-13 79.7 133 42.1
CSS0049191 Camellia sinensis var. sinensis HOM05D003598 ORTHO05D004198 1.8e-13 79.7 137 43.1
vmacro09196 Vaccinium macrocarpon HOM05D003598 ORTHO05D004198 1.8e-13 79.7 131 41.2
Sed0024830 Sechium edule HOM05D003598 ORTHO05D004198 3.0e-13 79.0 141 41.1
Sp6g25920 Schrenkiella parvula HOM05D003598 ORTHO05D004198 3.9e-13 78.6 114 39.5
VMungo1127G1291 Vigna mungo HOM05D003598 ORTHO05D004198 5.1e-13 78.2 124 41.9
Cpa.g.sc51.45 Carica papaya HOM05D003598 ORTHO05D004198 6.7e-13 77.8 136 36.8
Sed0014776 Sechium edule HOM05D003598 ORTHO05D004198 6.7e-13 77.8 141 41.1
A10p21130 Brassica napus HOM05D003598 ORTHO05D004198 4.3e-12 75.1 133 35.3
Sc06g0004000 Simmondsia chinensis HOM05D003598 ORTHO05D004198 4.3e-12 75.1 136 36.8
THA.LOC104802853 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 5.7e-12 74.7 134 38.8
C09p58280 Brassica napus HOM05D003598 ORTHO05D004198 7.4e-12 74.3 114 38.6
BolC9t58693H Brassica oleracea HOM05D003598 ORTHO05D004198 7.4e-12 74.3 114 38.6
BraA10t44179Z Brassica rapa HOM05D001989 ORTHO05D004198 7.4e-12 74.3 114 37.7
Rhsim06G0126100 Rhododendron simsii HOM05D003598 ORTHO05D004198 7.4e-12 74.3 134 40.3
ClCG10G011850 Citrullus lanatus HOM05D003598 ORTHO05D004198 9.7e-12 73.9 130 41.5
CSS0011637 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D000909 1.3e-11 73.6 111 44.1
CARHR194630 Cardamine hirsuta HOM05D003598 ORTHO05D004198 1.3e-11 73.6 134 35.8
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 1.7e-11 73.2 133 39.1
Lalb_Chr03g0024851 Lupinus albus HOM05D003598 ORTHO05D004198 1.7e-11 73.2 139 36.7
THA.LOC104820751 Tarenaya hassleriana HOM05D003598 ORTHO05D004198 1.7e-11 73.2 134 38.8
Cc08_g05000 Coffea canephora HOM05D003598 ORTHO05D004198 3.7e-11 72.0 132 40.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 3.7e-11 72.0 102 43.1
Sc10g0007060 Simmondsia chinensis HOM05D003598 ORTHO05D004198 3.7e-11 72.0 121 38.0
MBI03_g24013_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 6.3e-11 71.2 118 39.0
BcaB01g05191 Brassica carinata HOM05D002281 ORTHO05D005599 8.2e-11 70.9 116 37.1
C03p10310 Brassica napus HOM05D003598 ORTHO05D004198 8.2e-11 70.9 116 37.1
BolC3t13511H Brassica oleracea HOM05D003598 ORTHO05D004198 8.2e-11 70.9 116 37.1
BraA03t10207Z Brassica rapa HOM05D003598 ORTHO05D004198 8.2e-11 70.9 116 37.1
Aqoxy3G01046 Aquilegia oxysepala HOM05D003598 ORTHO05D004198 1.4e-10 70.1 137 40.9
Carub.0008s0217 Capsella rubella HOM05D003598 ORTHO05D004198 1.4e-10 70.1 136 33.8
Solyc03g119420.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 2.4e-10 69.3 112 40.2
Migut.E01352 Erythranthe guttata HOM05D003598 ORTHO05D004198 3.1e-10 68.9 130 40.0
Hma1.2p1_0218F.1_g092550 Hydrangea macrophylla HOM05D003598 ORTHO05D004198 3.1e-10 68.9 121 38.8
Sopen03g038270 Solanum pennellii HOM05D003598 ORTHO05D004198 4.1e-10 68.6 112 39.3
PGSC0003DMG400005723 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.1e-10 68.6 112 39.3
SGA_v2.0_scaffold144G35883 Striga asiatica HOM05D003598 ORTHO05D004198 6.9e-10 67.8 113 39.8
Nitab4.5_0002941g0020 Nicotiana tabacum HOM05D003598 ORTHO05D004198 9.1e-10 67.4 112 39.3
MSTRG.1768 Avicennia marina HOM05D003598 ORTHO05D004198 1.2e-09 67.0 114 40.4
BcaC04g18694 Brassica carinata HOM05D003598 ORTHO05D004198 1.2e-09 67.0 133 37.6
Nn4g24926 Nelumbo nucifera HOM05D003598 ORTHO05D004198 1.2e-09 67.0 121 38.0
Aa31LG11G11250 Aethionema arabicum HOM05D003598 ORTHO05D004198 1.5e-09 66.6 134 38.1
Peaxi162Scf00193g00013 Petunia axillaris HOM05D003598 ORTHO05D004198 1.5e-09 66.6 130 39.2
BcaB08g36681 Brassica carinata HOM05D003598 ORTHO05D004198 2.0e-09 66.2 114 36.8
Thhalv10015717m.g Eutrema salsugineum HOM05D003598 ORTHO05D004198 2.0e-09 66.2 130 34.6
Sopen08g024380 Solanum pennellii HOM05D003598 ORTHO05D004198 2.0e-09 66.2 115 38.3
AL6G29630 Arabidopsis lyrata HOM05D003598 ORTHO05D004198 3.4e-09 65.5 134 35.8
CAN.G1425.3 Capsicum annuum HOM05D003598 ORTHO05D004198 3.4e-09 65.5 112 40.2
Cc08_g04950 Coffea canephora HOM05D003598 ORTHO05D004198 3.4e-09 65.5 106 45.3
EL10Ac9g22923 Beta vulgaris HOM05D003598 ORTHO05D004198 4.5e-09 65.1 116 38.8
A03p08820 Brassica napus HOM05D003598 ORTHO05D004198 4.5e-09 65.1 114 36.8
Solyc08g075730.3 Solanum lycopersicum HOM05D003598 ORTHO05D004198 4.5e-09 65.1 112 38.4
PGSC0003DMG400030870 Solanum tuberosum HOM05D003598 ORTHO05D004198 4.5e-09 65.1 112 38.4
Lsat_1_v5_gn_3_7261 Lactuca sativa HOM05D003598 ORTHO05D004198 5.9e-09 64.7 134 34.3
Nitab4.5_0001450g0070 Nicotiana tabacum HOM05D003598 ORTHO05D004198 5.9e-09 64.7 112 37.5
Rhsim04G0081000 Rhododendron simsii HOM05D003598 ORTHO05D004198 5.9e-09 64.7 109 39.4
ECA240G3477 Erigeron canadensis HOM05D003598 ORTHO05D004198 7.7e-09 64.3 135 31.9
AT5G18400 Arabidopsis thaliana HOM05D003598 ORTHO05D004198 1.0e-08 63.9 134 38.1
Carub.0006s1666 Capsella rubella HOM05D003598 ORTHO05D004198 1.0e-08 63.9 134 36.6
Nitab4.5_0001659g0130 Nicotiana tabacum HOM05D003598 ORTHO05D004198 1.0e-08 63.9 112 37.5
Prupe.8G036300 Prunus persica HOM05D003598 ORTHO05D004198 1.0e-08 63.9 70 50.0
Gohir.A08G186600 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.2e-08 62.8 133 36.8
Gohir.D08G204800 Gossypium hirsutum HOM05D003598 ORTHO05D004198 2.2e-08 62.8 131 37.4
Ca_06100_v3 Cicer arietinum L. HOM05D003598 ORTHO05D004198 2.9e-08 62.4 75 49.3
COL.COLO4_11873 Corchorus olitorius HOM05D003598 ORTHO05D004198 2.9e-08 62.4 131 35.1
Duzib133G1064 Durio zibethinus HOM05D003598 ORTHO05D004198 2.9e-08 62.4 130 35.4
Gorai.004G216900 Gossypium raimondii HOM05D003598 ORTHO05D004198 5.0e-08 61.6 133 36.1
MBI06_g36503_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 5.0e-08 61.6 122 37.7
Thecc.01G274200 Theobroma cacao HOM05D003598 ORTHO05D004198 8.5e-08 60.8 137 32.8
COL.COLO4_09060 Corchorus olitorius HOM05D003598 ORTHO05D004198 1.1e-07 60.5 114 37.7
SalBow8G4212 Salvia bowleyana HOM05D003598 ORTHO05D004198 1.1e-07 60.5 114 37.7
CDE02G3181 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 1.4e-07 60.1 125 40.0
MBI06_g34034_MAGBIO Magnolia biondii HOM05D003598 ORTHO05D004198 1.9e-07 59.7 122 36.9
unitig_899.g14735 Utricularia gibba HOM05D003598 ORTHO05D004198 2.5e-07 59.3 113 38.1
DCAR_002566 Daucus carota HOM05D003598 ORTHO05D004198 3.2e-07 58.9 131 33.6
Lsat_1_v5_gn_6_87300 Lactuca sativa HOM05D003598 ORTHO05D004198 3.2e-07 58.9 133 33.8
Lsat_1_v5_gn_6_87320 Lactuca sativa HOM05D003598 ORTHO05D009814 4.2e-07 58.5 133 33.1
Cc00_g26130 Coffea canephora HOM05D003598 ORTHO05D004198 5.5e-07 58.2 118 39.8
ATR0618G278 Amborella trichopoda HOM05D003598 ORTHO05D004198 9.4e-07 57.4 135 32.6
Cc08_g04800 Coffea canephora HOM05D003598 ORTHO05D004198 9.4e-07 57.4 117 35.9
Lj6A721G58 Lonicera japonica HOM05D003598 ORTHO05D004198 9.4e-07 57.4 133 32.3
Cc08_g04900 Coffea canephora HOM05D003598 ORTHO05D004198 1.6e-06 56.6 56 57.1
Nn6g34923 Nelumbo nucifera HOM05D003598 ORTHO05D004198 2.1e-06 56.2 110 35.5
CDE04G2679 Ceratophyllum demersum HOM05D003598 ORTHO05D004198 6.1e-06 54.7 126 37.3
Gohir.A11G124700 Gossypium hirsutum HOM05D003598 ORTHO05D004198 6.1e-06 54.7 116 32.8
Gorai.007G139000 Gossypium raimondii HOM05D003598 ORTHO05D004198 6.1e-06 54.7 116 32.8
Gohir.D11G129900 Gossypium hirsutum HOM05D003598 ORTHO05D004198 7.9e-06 54.3 116 32.8


User provided reference genes

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