Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 3.5e-225 784.6 403 100.0
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 4.6e-193 677.9 402 84.6
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 7.9e-193 677.2 400 85.2
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.5e-191 672.9 400 85.2
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 2.2e-187 659.1 402 82.6
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 5.0e-187 657.9 402 82.8
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 6.5e-187 657.5 402 82.6
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 4.2e-186 654.8 402 80.6
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 4.2e-186 654.8 402 80.8
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 2.3e-184 649.0 402 81.3
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 3.0e-184 648.7 400 81.2
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 8.8e-184 647.1 403 81.1
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 9.7e-183 643.7 396 82.1
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.3e-182 643.3 402 79.9
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 1.7e-182 642.9 402 79.6
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.7e-182 642.9 403 80.4
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.7e-182 642.9 403 80.9
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 3.1e-181 638.6 401 80.8
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 5.3e-181 637.9 402 80.1
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 5.3e-181 637.9 402 80.1
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 7.0e-181 637.5 402 79.9
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 9.1e-181 637.1 400 80.2
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 1.2e-180 636.7 403 79.7
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.6e-180 636.3 400 80.2
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 7.7e-180 634.0 400 81.0
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 1.0e-179 633.6 400 79.5
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 1.0e-179 633.6 401 79.8
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 1.3e-179 633.3 405 79.3
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 1.3e-179 633.3 402 79.1
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.2e-179 632.5 402 79.4
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 3.8e-179 631.7 402 79.6
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 3.8e-179 631.7 400 80.0
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 78.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 79.2
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 5.0e-179 631.3 400 78.8
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 6.5e-179 630.9 402 79.4
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.1e-178 630.2 400 78.2
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 1.1e-178 630.2 400 79.8
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 2.5e-178 629.0 426 74.6
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 2.5e-178 629.0 400 77.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.2e-178 628.6 402 78.4
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 4.2e-178 628.2 400 77.2
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 5.5e-178 627.9 403 78.9
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 1.2e-177 626.7 400 77.8
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 1.2e-177 626.7 400 77.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 1.6e-177 626.3 401 79.1
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 2.7e-177 625.5 400 78.5
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 3.6e-177 625.2 403 76.4
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 3.6e-177 625.2 403 77.9
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.6e-177 625.2 402 78.1
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 1.8e-176 622.9 403 77.2
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 4.0e-176 621.7 402 78.1
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 5.2e-176 621.3 398 77.4
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 5.2e-176 621.3 402 78.4
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 6.7e-176 620.9 403 76.7
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 8.8e-176 620.5 403 76.9
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.2e-175 620.2 365 82.7
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 2.0e-175 619.4 403 76.4
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 2.0e-175 619.4 402 77.9
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 2.6e-175 619.0 421 75.3
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 3.3e-175 618.6 403 76.9
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.3e-175 618.6 402 77.6
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 3.3e-175 618.6 402 77.9
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 3.3e-175 618.6 400 77.8
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 4.4e-175 618.2 403 76.9
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 4.4e-175 618.2 403 76.4
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 5.7e-175 617.8 403 76.7
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 5.7e-175 617.8 403 76.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 9.7e-175 617.1 402 76.9
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 9.7e-175 617.1 432 74.5
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 1.3e-174 616.7 402 76.9
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 1.7e-174 616.3 402 76.6
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 2.2e-174 615.9 403 77.7
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 2.8e-174 615.5 398 77.6
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 2.8e-174 615.5 402 77.4
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 3.7e-174 615.1 403 76.7
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 4.8e-174 614.8 400 77.0
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 6.3e-174 614.4 403 76.2
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 1.4e-173 613.2 401 77.6
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 1.8e-173 612.8 402 76.1
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 1.8e-173 612.8 402 76.4
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 2.4e-173 612.5 400 76.5
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 3.1e-173 612.1 400 76.2
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 3.1e-173 612.1 402 76.1
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 7.0e-173 610.9 403 75.4
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 7.0e-173 610.9 413 74.6
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 3.5e-172 608.6 403 75.7
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 4.5e-172 608.2 419 73.3
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 5.9e-172 607.8 401 75.3
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 2.2e-171 605.9 403 74.4
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 3.8e-171 605.1 401 76.8
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 5.0e-171 604.7 400 75.5
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 6.5e-171 604.4 393 77.1
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 5.5e-170 601.3 403 74.2
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 7.2e-170 600.9 402 75.9
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 9.4e-170 600.5 396 77.3
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 2.7e-169 599.0 396 76.0
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.7e-169 598.2 385 77.4
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 1.4e-168 596.7 404 75.7
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.8e-168 596.3 366 78.7
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 3.0e-168 595.5 401 74.3
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 9.1e-165 583.9 398 73.4
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.9e-163 578.9 454 69.4
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.8e-163 578.6 419 72.1
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 1.5e-162 576.6 403 73.2
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.2e-162 575.5 447 68.5
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 5.5e-162 574.7 399 72.7
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.0e-160 568.9 446 67.9
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 5.2e-160 568.2 496 62.1
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 5.7e-159 564.7 398 68.8
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 6.3e-158 561.2 555 57.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.7e-156 554.3 357 79.0
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 3.7e-142 508.8 311 78.1
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 2.1e-137 493.0 318 79.6
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.8e-137 492.7 331 76.4
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 8.1e-137 491.1 290 81.7
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 4.1e-133 478.8 313 77.6
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 3.1e-120 436.0 393 57.5
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 1.7e-115 420.2 364 55.5
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 1.7e-115 420.2 346 66.2
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.5e-114 417.2 295 73.2
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 9.6e-114 414.5 356 57.0
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 9.0e-112 407.9 340 57.1
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 6.0e-100 368.6 349 53.0
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.2e-94 350.1 236 79.2
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 6.1e-84 315.5 221 73.8
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 9.7e-82 308.1 284 51.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 5.7e-74 282.3 334 44.6
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 1.6e-68 264.2 358 41.1
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 8.5e-62 241.9 233 57.1
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 8.0e-60 235.3 351 40.2
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 6.7e-59 232.3 205 64.9
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 2.0e-58 230.7 171 68.4
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 2.0e-55 220.7 284 49.6
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.6e-44 184.5 99 89.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 3.7e-33 146.7 80 86.2
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 6.4e-33 146.0 82 85.4
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 6.6e-30 136.0 136 55.9
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.4e-26 123.2 81 72.8
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 9.5e-21 105.5 65 70.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 1.6e-20 104.8 105 50.5
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 7.5e-18 95.9 62 74.2
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 3.3e-13 80.5 67 61.2
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 1.9e-08 64.7 45 71.1
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 4.1e-08 63.5 42 78.6
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 4.1e-08 63.5 50 70.0


User provided reference genes

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