Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p041567 Quercus lobata HOM05D000474 ORTHO05D337319 1.1e-81 306.6 159 100.0
Medtr7g098650 Medicago truncatula HOM05D000474 ORTHO05D001061 2.7e-11 72.8 58 58.6
Lalb_Chr20g0113561 Lupinus albus HOM05D000474 ORTHO05D001061 1.0e-10 70.9 44 68.2
Ca_08748_v3 Cicer arietinum L. HOM05D000474 ORTHO05D001061 2.3e-10 69.7 58 56.9
CsaV3_3G028430 Cucumis sativus L. HOM05D000474 ORTHO05D001061 2.3e-10 69.7 43 69.8
Glyma.10G040700 Glycine max HOM05D000474 ORTHO05D001061 2.3e-10 69.7 58 55.2
arahy.Tifrunner.gnm1.ann1.A194LB Arachis hypogaea HOM05D000474 ORTHO05D001061 3.0e-10 69.3 57 57.9
arahy.Tifrunner.gnm1.ann1.GBAH2S Arachis hypogaea HOM05D000474 ORTHO05D001061 3.0e-10 69.3 57 57.9
Glyma.13G127300 Glycine max HOM05D000474 ORTHO05D001061 3.0e-10 69.3 58 55.2
Sed0004406 Sechium edule HOM05D000474 ORTHO05D001061 3.0e-10 69.3 43 69.8
QL09p041624 Quercus lobata HOM05D000474 ORTHO05D001061 3.9e-10 68.9 58 56.9
Carub.0003s3476 Capsella rubella HOM05D000474 ORTHO05D001061 5.1e-10 68.6 44 65.9
ClCG00G001620 Citrullus lanatus HOM05D000474 ORTHO05D001061 6.6e-10 68.2 44 72.7
ClCG07G001430 Citrullus lanatus HOM05D000474 ORTHO05D001061 6.6e-10 68.2 44 72.7
Psat6g062560 Pisum sativum HOM05D000474 ORTHO05D001061 6.6e-10 68.2 43 67.4
VMungo0720G1044 Vigna mungo HOM05D000474 ORTHO05D001061 6.6e-10 68.2 44 65.9
VMungo1383G2864 Vigna mungo HOM05D000474 ORTHO05D001061 6.6e-10 68.2 44 65.9
MELO3C012836.2 Cucumis melo HOM05D000474 ORTHO05D001061 8.7e-10 67.8 43 67.4
Psat3g051600 Pisum sativum HOM05D000474 ORTHO05D001061 1.1e-09 67.4 44 65.9
TPR.G20076 Trifolium pratense HOM05D000474 ORTHO05D001061 1.1e-09 67.4 57 56.1
Cfa002490 Carpinus fangiana HOM05D000474 ORTHO05D001061 1.5e-09 67.0 112 36.6
Phvul.001G165332 Phaseolus vulgaris HOM05D000474 ORTHO05D001061 1.5e-09 67.0 44 65.9
AT2G20370 Arabidopsis thaliana HOM05D000474 ORTHO05D001061 1.9e-09 66.6 43 65.1
Medtr1g069460 Medicago truncatula HOM05D000474 ORTHO05D001061 1.9e-09 66.6 45 66.7
Phvul.007G153600 Phaseolus vulgaris HOM05D000474 ORTHO05D001061 1.9e-09 66.6 44 63.6
AUR62008804 Chenopodium quinoa HOM05D000474 ORTHO05D001061 2.5e-09 66.2 59 54.2
MD10G1175500 Malus domestica HOM05D000474 ORTHO05D001061 2.5e-09 66.2 58 56.9
Sed0006220 Sechium edule HOM05D000474 ORTHO05D001061 2.5e-09 66.2 43 67.4
MD05G1187900 Malus domestica HOM05D000474 ORTHO05D001061 4.3e-09 65.5 112 36.6
Ah.08g213630 Amaranthus hybridus HOM05D000474 ORTHO05D001061 5.6e-09 65.1 58 55.2
Prupe.8G214900 Prunus persica HOM05D000015 ORTHO05D008807 5.6e-09 65.1 74 47.3
TAR362G0378 Trochodendron aralioides HOM05D000474 ORTHO05D001061 5.6e-09 65.1 99 40.4
AUR62025435 Chenopodium quinoa HOM05D000474 ORTHO05D001061 7.3e-09 64.7 58 55.2
HPP92_013020 Vanilla planifolia HOM05D000474 ORTHO05D001061 7.3e-09 64.7 41 73.2
Lalb_Chr25g0289831 Lupinus albus HOM05D000474 ORTHO05D001061 9.6e-09 64.3 45 66.7
TAR636G0350 Trochodendron aralioides HOM05D000474 ORTHO05D001061 9.6e-09 64.3 45 66.7
CiPaw.03G271400 Carya illinoinensis HOM05D000474 ORTHO05D001061 1.3e-08 63.9 44 63.6
Dinv19264 Davidia involucrata HOM05D000474 ORTHO05D001061 1.6e-08 63.5 44 65.9
Glyma.03G167650 Glycine max HOM05D000474 ORTHO05D001061 1.6e-08 63.5 58 55.2
Glyma.19G168800 Glycine max HOM05D000474 ORTHO05D001061 1.6e-08 63.5 58 55.2
CARHR110900 Cardamine hirsuta HOM05D000474 ORTHO05D001061 2.1e-08 63.2 42 64.3
FAN15G3435 Fragaria x ananassa HOM05D000474 ORTHO05D001061 2.1e-08 63.2 43 65.1
Nitab4.5_0000845g0180 Nicotiana tabacum HOM05D000474 ORTHO05D001061 2.1e-08 63.2 51 56.9
Sabra02G0194700 Salix brachista HOM05D000474 ORTHO05D001061 2.1e-08 63.2 58 51.7
CSS0042818 Camellia sinensis var. sinensis HOM05D000474 ORTHO05D001061 2.8e-08 62.8 44 65.9
Thhalv10001932m.g Eutrema salsugineum HOM05D000474 ORTHO05D001061 2.8e-08 62.8 42 64.3
AL3G53340 Arabidopsis lyrata HOM05D000474 ORTHO05D001061 3.6e-08 62.4 42 61.9
Peaxi162Scf00043g00252 Petunia axillaris HOM05D000474 ORTHO05D001061 3.6e-08 62.4 44 61.4
MBI07_g21065_MAGBIO Magnolia biondii HOM05D000474 ORTHO05D001061 4.8e-08 62.0 59 52.5
Potri.002G256200 Populus trichocarpa HOM05D000474 ORTHO05D001061 4.8e-08 62.0 58 50.0
Sp3g33620 Schrenkiella parvula HOM05D000474 ORTHO05D001061 4.8e-08 62.0 42 61.9
Manes.13G039300 Manihot esculenta HOM05D000474 ORTHO05D001061 6.2e-08 61.6 58 48.3
PGR031G0298 Punica granatum HOM05D000474 ORTHO05D001061 6.2e-08 61.6 46 65.2
TWI18G0673 Tripterygium wilfordii HOM05D000474 ORTHO05D001061 6.2e-08 61.6 44 59.1
TWI75G0562 Tripterygium wilfordii HOM05D000474 ORTHO05D001061 6.2e-08 61.6 44 59.1
BcaB03g16830 Brassica carinata HOM05D000474 ORTHO05D001061 8.1e-08 61.2 42 61.9
TPR.G5872 Trifolium pratense HOM05D000474 ORTHO05D001061 8.1e-08 61.2 45 62.2
ATR0787G148 Amborella trichopoda HOM05D000474 ORTHO05D001061 1.1e-07 60.8 45 62.2
BcaB07g31590 Brassica carinata HOM05D000474 ORTHO05D001061 1.1e-07 60.8 42 61.9
Manes.12G038200 Manihot esculenta HOM05D000474 ORTHO05D001061 1.1e-07 60.8 58 48.3
Atru.chr5.1867 Acer truncatum HOM05D000474 ORTHO05D001061 1.4e-07 60.5 45 62.2
FvH4_2g20390 Fragaria vesca HOM05D000474 ORTHO05D001061 1.4e-07 60.5 42 64.3
FAN24G0643 Fragaria x ananassa HOM05D000474 ORTHO05D001061 1.4e-07 60.5 42 64.3
FAN27G1535 Fragaria x ananassa HOM05D000474 ORTHO05D001061 1.4e-07 60.5 42 64.3
RcHm_v2.0_Chr6g0286491 Rosa chinensis HOM05D000474 ORTHO05D001061 1.4e-07 60.5 42 64.3
GSVIVG01028435001 Vitis vinifera HOM05D000015 ORTHO05D008807 1.4e-07 60.5 40 67.5
EL10Ac7g17694 Beta vulgaris HOM05D000474 ORTHO05D001061 1.8e-07 60.1 59 54.2
Lj5g0005062 Lotus japonicus HOM05D000474 ORTHO05D001061 1.8e-07 60.1 34 73.5
Lalb_Chr02g0152751 Lupinus albus HOM05D000474 ORTHO05D001061 1.8e-07 60.1 31 77.4
Nitab4.5_0002435g0040 Nicotiana tabacum HOM05D000474 ORTHO05D001061 1.8e-07 60.1 44 59.1
Aqoxy5G00126 Aquilegia oxysepala HOM05D000474 ORTHO05D001061 2.4e-07 59.7 44 56.8
Nn1g02999 Nelumbo nucifera HOM05D000474 ORTHO05D001061 2.4e-07 59.7 44 63.6
Sc05g0002870 Simmondsia chinensis HOM05D000474 ORTHO05D001061 2.4e-07 59.7 58 53.4
Zm00001eb402930 Zea mays HOM05D000474 ORTHO05D001061 2.4e-07 59.7 45 57.8
BcaC04g22791 Brassica carinata HOM05D000474 ORTHO05D001061 3.1e-07 59.3 42 57.1
A09p12870 Brassica napus HOM05D000474 ORTHO05D001061 3.1e-07 59.3 42 57.1
C09p15260 Brassica napus HOM05D000474 ORTHO05D001061 3.1e-07 59.3 42 57.1
BolC9t54432H Brassica oleracea HOM05D000474 ORTHO05D001061 3.1e-07 59.3 42 57.1
BraA09t36932Z Brassica rapa HOM05D000474 ORTHO05D001061 3.1e-07 59.3 42 57.1
Eucgr.A01318 Eucalyptus grandis HOM05D000474 ORTHO05D001061 3.1e-07 59.3 44 63.6
TWI12G1448 Tripterygium wilfordii HOM05D000474 ORTHO05D001061 3.1e-07 59.3 44 56.8
BcaC06g36725 Brassica carinata HOM05D000474 ORTHO05D001061 4.0e-07 58.9 42 57.1
A07p00350 Brassica napus HOM05D000474 ORTHO05D001061 4.0e-07 58.9 42 57.1
C07p00710 Brassica napus HOM05D000474 ORTHO05D001061 4.0e-07 58.9 42 57.1
BolC7t40513H Brassica oleracea HOM05D000474 ORTHO05D001061 4.0e-07 58.9 42 57.1
BraA07t27826Z Brassica rapa HOM05D000474 ORTHO05D001061 4.0e-07 58.9 42 57.1
CDE08G0379 Ceratophyllum demersum HOM05D000474 ORTHO05D001061 4.0e-07 58.9 43 58.1
Zm00001eb003650 Zea mays HOM05D000474 ORTHO05D001061 4.0e-07 58.9 44 56.8
Actinidia37555 Actinidia chinensis HOM05D000474 ORTHO05D001061 6.9e-07 58.2 44 63.6
Ca_09645_v3 Cicer arietinum L. HOM05D000474 ORTHO05D001061 9.0e-07 57.8 30 76.7
Oeu052084.1 Olea europaea HOM05D000474 ORTHO05D001061 9.0e-07 57.8 50 58.0
Aa31LG8G17360 Aethionema arabicum HOM05D000474 ORTHO05D001061 1.2e-06 57.4 38 63.2
Dinv43065 Davidia involucrata HOM05D000015 ORTHO05D008807 1.2e-06 57.4 34 73.5
Oeu026806.1 Olea europaea HOM05D000474 ORTHO05D001061 1.2e-06 57.4 44 61.4
PSO764G0055 Papaver somniferum HOM05D000474 ORTHO05D001061 1.2e-06 57.4 42 59.5
SHI26733 Sapria himalayana HOM05D000474 ORTHO05D001061 1.2e-06 57.4 43 58.1
CAN.G536.9 Capsicum annuum HOM05D000474 ORTHO05D001061 1.5e-06 57.0 44 59.1
Lj1g0004435 Lotus japonicus HOM05D000015 ORTHO05D008807 2.0e-06 56.6 39 61.5
Rhsim01G0260100 Rhododendron simsii HOM05D000474 ORTHO05D001061 2.0e-06 56.6 44 63.6
Actinidia09510 Actinidia chinensis HOM05D000474 ORTHO05D001061 2.6e-06 56.2 44 59.1
DCAR_012593 Daucus carota HOM05D000474 ORTHO05D001061 2.6e-06 56.2 77 44.2
Lj2P1142T38 Lonicera japonica HOM05D000474 ORTHO05D001061 4.5e-06 55.5 58 51.7
COL.COLO4_10207 Corchorus olitorius HOM05D000474 ORTHO05D001061 5.8e-06 55.1 44 54.5
MSTRG.18356 Avicennia marina HOM05D000474 ORTHO05D001061 7.6e-06 54.7 77 39.0
Solyc09g064480.1 Solanum lycopersicum HOM05D000474 ORTHO05D001061 7.6e-06 54.7 44 52.3
Sopen09g025610 Solanum pennellii HOM05D000474 ORTHO05D001061 7.6e-06 54.7 44 52.3
Os03g0144800 Oryza sativa ssp. japonica HOM05D000474 ORTHO05D001061 9.9e-06 54.3 31 67.7


User provided reference genes

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