Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p041558 Quercus lobata HOM05D006027 ORTHO05D007604 7.3e-98 360.5 179 100.0
Haze_24710 Corylus avellana HOM05D006027 ORTHO05D007604 5.8e-79 297.7 184 82.1
Thecc.01G249800 Theobroma cacao HOM05D006027 ORTHO05D007604 4.6e-76 288.1 182 82.4
Gorai.001G182100 Gossypium raimondii HOM05D006027 ORTHO05D007604 3.0e-75 285.4 182 81.9
Gohir.A07G152700 Gossypium hirsutum HOM05D006027 ORTHO05D007604 5.1e-75 284.6 182 81.3
CANSAT01G0515 Cannabis sativa HOM05D006027 ORTHO05D007604 8.7e-75 283.9 183 80.9
Gohir.D07G158900 Gossypium hirsutum HOM05D006027 ORTHO05D007604 8.7e-75 283.9 182 81.3
Prupe.8G215000 Prunus persica HOM05D006027 ORTHO05D007604 4.3e-74 281.6 181 79.0
CANSAT01G2333 Cannabis sativa HOM05D006027 ORTHO05D007604 9.6e-74 280.4 183 80.9
Manes.12G038000 Manihot esculenta HOM05D006027 ORTHO05D007604 4.8e-73 278.1 178 77.5
Glyma.13G127200 Glycine max HOM05D006027 ORTHO05D007604 6.2e-73 277.7 181 79.0
Duzib211G0648 Durio zibethinus HOM05D006027 ORTHO05D007604 1.1e-72 276.9 182 80.2
Duzib138G0534 Durio zibethinus HOM05D006027 ORTHO05D007604 1.8e-72 276.2 182 79.1
Atru.chr5.1865 Acer truncatum HOM05D006027 ORTHO05D007604 3.1e-72 275.4 181 78.5
Dinv43066 Davidia involucrata HOM05D006027 ORTHO05D007604 9.0e-72 273.9 181 77.3
Cfa002488 Carpinus fangiana HOM05D006027 ORTHO05D007604 1.2e-71 273.5 167 82.0
Manes.13G039500 Manihot esculenta HOM05D006027 ORTHO05D007604 2.0e-71 272.7 179 77.7
Lalb_Chr02g0152741 Lupinus albus HOM05D006027 ORTHO05D007604 7.6e-71 270.8 181 76.8
Eucgr.K01424 Eucalyptus grandis HOM05D006027 ORTHO05D007604 1.3e-70 270.0 182 75.3
GSVIVG01028434001 Vitis vinifera HOM05D006027 ORTHO05D007604 2.2e-70 269.2 181 77.3
MD05G1188500 Malus domestica HOM05D006027 ORTHO05D007604 2.9e-70 268.9 181 76.2
Potri.002G256400 Populus trichocarpa HOM05D006027 ORTHO05D007604 2.9e-70 268.9 182 76.9
Sabra02G0194900 Salix brachista HOM05D006027 ORTHO05D007604 1.4e-69 266.5 182 75.8
TAR633G0397 Trochodendron aralioides HOM05D006027 ORTHO05D007604 1.4e-69 266.5 183 76.0
FAN27G2528 Fragaria x ananassa HOM05D006027 ORTHO05D007604 1.9e-69 266.2 182 76.4
Glyma.10G040600 Glycine max HOM05D006027 ORTHO05D007604 1.9e-69 266.2 181 75.1
FAN15G2830 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.2e-69 265.4 182 75.8
Phvul.007G153500 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.2e-69 265.4 181 76.8
Lj1C74G4 Lonicera japonica HOM05D006027 ORTHO05D007604 7.1e-69 264.2 156 84.0
Lj5g0017558 Lotus japonicus HOM05D006027 ORTHO05D007604 1.2e-68 263.5 181 74.0
VMungo0720G1620 Vigna mungo HOM05D006027 ORTHO05D007604 1.2e-68 263.5 181 75.1
FvH4_2g20470 Fragaria vesca HOM05D006027 ORTHO05D007604 3.5e-68 261.9 182 74.7
FAN24G3422 Fragaria x ananassa HOM05D006027 ORTHO05D007604 3.5e-68 261.9 182 74.7
MD10G1176000 Malus domestica HOM05D006027 ORTHO05D007604 3.5e-68 261.9 181 74.6
DCAR_000568 Daucus carota HOM05D006027 ORTHO05D007604 6.0e-68 261.2 180 76.1
Nn3g19801 Nelumbo nucifera HOM05D006027 ORTHO05D007604 6.0e-68 261.2 181 75.7
Lalb_Chr06g0170731 Lupinus albus HOM05D006027 ORTHO05D007604 1.0e-67 260.4 181 75.1
Sopen09g025650 Solanum pennellii HOM05D006027 ORTHO05D007604 3.0e-67 258.8 180 76.1
Cc01_g17770 Coffea canephora HOM05D006027 ORTHO05D007604 5.1e-67 258.1 182 73.1
arahy.Tifrunner.gnm1.ann1.72UZ71 Arachis hypogaea HOM05D006027 ORTHO05D007604 6.7e-67 257.7 181 74.0
arahy.Tifrunner.gnm1.ann1.FRV526 Arachis hypogaea HOM05D006027 ORTHO05D007604 6.7e-67 257.7 181 74.0
Solyc09g064500.3 Solanum lycopersicum HOM05D006027 ORTHO05D007604 8.7e-67 257.3 180 75.6
PGSC0003DMG400008585 Solanum tuberosum HOM05D006027 ORTHO05D007604 8.7e-67 257.3 180 75.6
Migut.D00479 Erythranthe guttata HOM05D006027 ORTHO05D007604 1.5e-66 256.5 182 70.9
PGR044G2038 Punica granatum HOM05D006027 ORTHO05D007604 1.5e-66 256.5 182 72.0
CSS0012566 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.3e-66 255.4 180 73.9
Nitab4.5_0002435g0010 Nicotiana tabacum HOM05D006027 ORTHO05D007604 3.3e-66 255.4 180 74.4
Nitab4.5_0000845g0140 Nicotiana tabacum HOM05D006027 ORTHO05D007604 4.3e-66 255.0 180 74.4
TWI18G0031 Tripterygium wilfordii HOM05D006027 ORTHO05D007604 5.6e-66 254.6 180 71.7
Aqoxy5G00130 Aquilegia oxysepala HOM05D006027 ORTHO05D007604 7.4e-66 254.2 184 72.8
Ca_09646_v3 Cicer arietinum L. HOM05D006027 ORTHO05D007604 7.4e-66 254.2 180 73.3
TAR362G0914 Trochodendron aralioides HOM05D006027 ORTHO05D007604 9.6e-66 253.8 183 73.8
Medtr1g069465 Medicago truncatula HOM05D006027 ORTHO05D007604 1.3e-65 253.4 181 71.8
TPR.G5919 Trifolium pratense HOM05D006027 ORTHO05D007604 1.6e-65 253.1 181 73.5
CSS0010160 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 2.8e-65 252.3 180 72.8
CAN.G536.12 Capsicum annuum HOM05D006027 ORTHO05D007604 3.7e-65 251.9 180 73.9
PSO764G0320 Papaver somniferum HOM05D006027 ORTHO05D007604 3.7e-65 251.9 184 72.3
Psat6g062520 Pisum sativum HOM05D006027 ORTHO05D007604 8.1e-65 250.8 184 73.9
SGA_v2.0_scaffold1G00660 Striga asiatica HOM05D006027 ORTHO05D007604 1.8e-64 249.6 185 71.4
ClCG06G001400 Citrullus lanatus HOM05D006027 ORTHO05D007604 2.4e-64 249.2 185 71.4
MELO3C022393.2 Cucumis melo HOM05D006027 ORTHO05D007604 5.3e-64 248.1 184 71.7
PSO832G0858 Papaver somniferum HOM05D006027 ORTHO05D007604 5.3e-64 248.1 183 71.6
Actinidia23700 Actinidia chinensis HOM05D006027 ORTHO05D007604 1.5e-63 246.5 180 71.1
Lsat_1_v5_gn_5_181161 Lactuca sativa HOM05D006027 ORTHO05D007604 4.5e-63 245.0 181 69.1
vmacro14793 Vaccinium macrocarpon HOM05D006027 ORTHO05D007604 1.0e-62 243.8 181 71.8
VMungo1383G1953 Vigna mungo HOM05D006027 ORTHO05D007604 1.0e-62 243.8 180 70.6
Actinidia09513 Actinidia chinensis HOM05D006027 ORTHO05D007604 3.8e-62 241.9 180 69.4
Ciclev10022322m.g Citrus clementina HOM05D006027 ORTHO05D007604 1.9e-61 239.6 173 71.7
Phvul.001G165200 Phaseolus vulgaris HOM05D006027 ORTHO05D007604 3.2e-61 238.8 180 69.4
HanXRQChr01g0014971 Helianthus annuus HOM05D006027 ORTHO05D007604 9.3e-61 237.3 182 68.7
Oeu015437.1 Olea europaea HOM05D006027 ORTHO05D007604 4.6e-60 235.0 156 77.6
Rhsim01G0260300 Rhododendron simsii HOM05D006027 ORTHO05D007604 6.0e-60 234.6 150 78.0
Oeu052083.1 Olea europaea HOM05D006027 ORTHO05D007604 2.3e-59 232.6 145 80.0
AUR62025437 Chenopodium quinoa HOM05D006027 ORTHO05D007604 3.9e-59 231.9 181 68.0
A03p58340 Brassica napus HOM05D006027 ORTHO05D007604 2.5e-58 229.2 183 64.5
CiPaw.03G271300 Carya illinoinensis HOM05D006027 ORTHO05D007604 9.6e-58 227.3 179 67.6
BraA01t00872Z Brassica rapa HOM05D006027 ORTHO05D007604 1.3e-57 226.9 165 66.7
MBI07_g08912_MAGBIO Magnolia biondii HOM05D006027 ORTHO05D007604 1.3e-57 226.9 181 66.3
Os01g0938100 Oryza sativa ssp. japonica HOM05D006027 ORTHO05D007604 1.3e-57 226.9 180 66.1
BcaC06g32609 Brassica carinata HOM05D006027 ORTHO05D007604 2.8e-57 225.7 162 67.9
COL.COLO4_10205 Corchorus olitorius HOM05D006027 ORTHO05D007604 2.8e-57 225.7 114 93.9
EL10Ac7g17691 Beta vulgaris HOM05D006027 ORTHO05D007604 3.7e-57 225.3 143 76.2
CDE02G4364 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 4.8e-57 224.9 187 63.6
A01p09280 Brassica napus HOM05D006027 ORTHO05D007604 8.2e-57 224.2 183 61.7
BolC7t46115H Brassica oleracea HOM05D006027 ORTHO05D007604 1.4e-56 223.4 184 63.0
Sp7g26630 Schrenkiella parvula HOM05D006027 ORTHO05D007604 1.8e-56 223.0 182 62.1
C07p56360 Brassica napus HOM05D006027 ORTHO05D007604 3.1e-56 222.2 184 62.5
Peaxi162Scf00043g00255 Petunia axillaris HOM05D006027 ORTHO05D007604 3.1e-56 222.2 114 91.2
THA.LOC104814531 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 3.1e-56 222.2 181 61.9
C01p10860 Brassica napus HOM05D006027 ORTHO05D007604 4.0e-56 221.9 183 60.7
Sed0007731 Sechium edule HOM05D006027 ORTHO05D007604 6.9e-56 221.1 115 89.6
BcaNung04696 Brassica carinata HOM05D006027 ORTHO05D007604 9.0e-56 220.7 183 61.7
Hund18287 Selenicereus undatus HOM05D006027 ORTHO05D007604 1.2e-55 220.3 180 65.0
Sc05g0002880 Simmondsia chinensis HOM05D006027 ORTHO05D007604 2.6e-55 219.2 175 69.7
Aa31LG2G21720 Aethionema arabicum HOM05D006027 ORTHO05D007604 3.4e-55 218.8 185 63.8
AT4G28660 Arabidopsis thaliana HOM05D006027 ORTHO05D007604 5.8e-55 218.0 182 60.4
Zm00001eb141870 Zea mays HOM05D006027 ORTHO05D007604 5.8e-55 218.0 181 65.2
ECA248G3782 Erigeron canadensis HOM05D006027 ORTHO05D007604 1.0e-54 217.2 149 71.8
Thhalv10026347m.g Eutrema salsugineum HOM05D006027 ORTHO05D007604 1.0e-54 217.2 182 59.9
SalBow4G0311 Salvia bowleyana HOM05D006027 ORTHO05D007604 1.7e-54 216.5 115 88.7
BolC1t01050H Brassica oleracea HOM05D000022 ORTHO05D000744 2.9e-54 215.7 176 61.9
Carub.0007s1200 Capsella rubella HOM05D006027 ORTHO05D007604 2.9e-54 215.7 182 61.0
CARHR236440 Cardamine hirsuta HOM05D006027 ORTHO05D007604 2.9e-54 215.7 177 59.9
AUR62008802 Chenopodium quinoa HOM05D006027 ORTHO05D007604 2.9e-54 215.7 118 84.7
AL7G23880 Arabidopsis lyrata HOM05D006027 ORTHO05D007604 6.5e-54 214.5 182 59.9
THA.LOC104820068 Tarenaya hassleriana HOM05D006027 ORTHO05D007604 8.4e-54 214.2 184 63.0
Cpa.g.sc87.33 Carica papaya HOM05D006027 ORTHO05D007604 1.9e-53 213.0 114 87.7
Zm00001eb141830 Zea mays HOM05D006027 ORTHO05D007604 3.2e-53 212.2 162 68.5
unitig_8.g3074 Utricularia gibba HOM05D006027 ORTHO05D007604 4.2e-53 211.8 183 62.3
HPP92_027289 Vanilla planifolia HOM05D006027 ORTHO05D007604 6.1e-52 208.0 152 66.4
HPP92_008468 Vanilla planifolia HOM05D006027 ORTHO05D007604 3.3e-50 202.2 181 58.6
ATR0787G157 Amborella trichopoda HOM05D006027 ORTHO05D007604 8.2e-49 197.6 114 79.8
Mapoly0042s0085 Marchantia polymorpha HOM05D006027 ORTHO05D007604 2.1e-44 183.0 175 57.7
Pp3c7_5450 Physcomitrium patens HOM05D006027 ORTHO05D007604 4.3e-42 175.3 159 55.3
SMO347G0509 Selaginella moellendorffii HOM05D006027 ORTHO05D007604 2.8e-41 172.6 114 72.8
AagrBONN_evm.TU.Sc2ySwM_340.224 Anthoceros agrestis HOM05D006027 ORTHO05D007604 1.4e-40 170.2 109 72.5
Pp3c11_18280 Physcomitrium patens HOM05D006027 ORTHO05D007604 3.4e-39 165.6 114 65.8
Ah.15g092630 Amaranthus hybridus HOM05D006027 ORTHO05D007604 2.1e-36 156.4 115 67.8
CBR_g12742 Chara braunii HOM05D006027 ORTHO05D007604 6.1e-36 154.8 108 63.9
MCO16G336 Micromonas commoda HOM05D006027 ORTHO05D007604 7.4e-34 147.9 110 60.0
Cre10.g440450 Chlamydomonas reinhardtii HOM05D006027 ORTHO05D007604 3.7e-33 145.6 109 60.6
PRCOL_00005949 Prasinoderma coloniale HOM05D006027 ORTHO05D007604 3.7e-33 145.6 106 61.3
CSS0017427 Camellia sinensis var. sinensis HOM05D006027 ORTHO05D007604 3.3e-26 122.5 172 46.5
RcHm_v2.0_Chr6g0286561 Rosa chinensis HOM05D006027 ORTHO05D007604 5.7e-26 121.7 104 66.3
Zm00001eb141750 Zea mays HOM05D006027 ORTHO05D007604 3.5e-23 112.5 57 91.2
Zm00001eb141790 Zea mays HOM05D006027 ORTHO05D007604 3.5e-23 112.5 57 91.2
TAR362G0025 Trochodendron aralioides HOM05D006027 ORTHO05D007604 4.0e-19 99.0 69 73.9
Zm00001eb141760 Zea mays HOM05D006027 ORTHO05D007604 9.1e-16 87.8 52 76.9
CDE09G0356 Ceratophyllum demersum HOM05D006027 ORTHO05D007604 5.0e-14 82.0 112 47.3


User provided reference genes

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