Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 1.9e-270 935.3 467 100.0
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 2.9e-162 575.9 472 61.4
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 7.3e-158 561.2 472 60.4
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 2.1e-157 559.7 472 60.0
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.8e-157 558.5 472 58.7
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 1.2e-155 553.9 461 61.2
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 2.2e-154 549.7 464 61.6
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 2.2e-154 549.7 464 60.1
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 3.8e-154 548.9 484 57.6
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 8.4e-154 547.7 472 57.8
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 1.1e-150 537.3 473 58.8
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 7.4e-150 534.6 492 55.9
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 2.4e-148 529.6 472 57.0
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 4.0e-148 528.9 469 57.8
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.3e-146 523.9 468 57.3
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 2.9e-146 522.7 492 56.3
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 6.5e-146 521.5 461 58.1
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 3.2e-145 519.2 452 58.0
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 9.0e-140 501.1 446 58.5
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 9.0e-140 501.1 498 54.8
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 1.2e-139 500.7 490 54.3
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.4e-137 493.8 447 56.8
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 7.1e-137 491.5 446 58.3
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 3.0e-135 486.1 480 54.2
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.2e-129 465.7 433 56.8
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 4.2e-129 465.7 427 57.4
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 7.4e-126 454.9 463 52.1
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 3.2e-121 439.5 460 50.0
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.8e-119 433.7 379 59.6
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 6.7e-119 431.8 455 51.6
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.1e-118 431.0 379 59.6
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 1.7e-114 417.2 463 47.9
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 2.8e-109 399.8 464 46.6
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 6.3e-109 398.7 465 46.5
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 1.0e-106 391.3 432 48.1
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 3.8e-106 389.4 510 43.3
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 1.9e-105 387.1 466 47.9
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 4.2e-105 386.0 463 45.6
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 4.0e-103 379.4 460 45.2
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 2.0e-102 377.1 245 78.0
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 2.6e-102 376.7 460 45.0
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 7.5e-102 375.2 456 44.5
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 9.8e-102 374.8 459 44.4
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 2.8e-101 373.2 459 45.1
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 3.7e-101 372.9 327 58.1
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 4.8e-101 372.5 456 44.5
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 8.3e-101 371.7 456 44.3
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 2.4e-100 370.2 456 44.3
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 2.4e-100 370.2 456 44.3
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.7e-98 364.0 457 44.4
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 1.9e-97 360.5 441 44.2
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 2.3e-95 353.6 403 48.9
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 1.2e-94 351.3 440 43.9
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.5e-94 350.9 220 73.6
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 2.5e-89 333.6 461 41.2
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 2.8e-88 330.1 445 43.8
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 2.0e-86 323.9 374 45.2
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.8e-84 317.4 459 40.1
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 9.2e-84 315.1 445 40.7
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.6e-83 314.3 405 44.7
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 3.9e-82 309.7 474 40.1
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 5.0e-82 309.3 413 43.8
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 6.2e-80 302.4 450 40.4
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 1.8e-79 300.8 461 39.0
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 8.3e-77 292.0 404 41.8
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 3.2e-76 290.0 459 38.1
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 3.5e-75 286.6 396 41.9
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 4.0e-71 273.1 457 35.9
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 5.8e-70 269.2 243 58.4
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 5.4e-60 236.1 310 44.8
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 3.8e-53 213.4 242 49.2
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 2.0e-46 191.0 266 42.9
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 4.9e-45 186.4 295 38.3
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 1.1e-33 148.7 89 79.8
Gohir.D11G218200 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.2e-28 130.6 157 44.6
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 4.2e-28 130.2 237 35.4
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 3.9e-18 97.1 64 67.2
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 8.7e-18 95.9 253 27.3
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 4.8e-16 90.1 472 22.9
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 6.3e-16 89.7 455 22.6
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 1.5e-14 85.1 55 60.0
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 3.4e-14 84.0 51 68.6
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 2.0e-09 68.2 106 42.5
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 2.8e-08 64.3 110 42.7


User provided reference genes

Program Settings