Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 9.8e-152 540.0 260 100.0
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 2.9e-127 458.8 258 83.3
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 8.9e-113 410.6 258 74.4
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.0e-112 409.5 261 75.1
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 7.6e-112 407.5 258 73.6
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 5.4e-110 401.4 258 73.3
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.7e-109 399.1 257 72.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.7e-108 396.4 260 70.4
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 5.1e-108 394.8 258 72.5
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 5.1e-108 394.8 257 70.4
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 1.1e-107 393.7 260 70.4
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.5e-107 392.5 257 69.3
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 4.7e-106 388.3 258 69.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 8.1e-106 387.5 258 68.2
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.4e-105 386.0 257 69.3
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.2e-105 384.8 258 69.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 3.4e-104 382.1 258 69.0
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 4.4e-104 381.7 257 70.0
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 4.4e-104 381.7 258 67.4
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.3e-103 380.2 257 69.6
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.3e-103 380.2 258 67.4
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.9e-103 379.0 260 69.2
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.8e-103 378.6 258 67.8
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 6.4e-103 377.9 257 69.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.4e-103 377.9 261 69.0
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.4e-102 375.9 261 67.4
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 9.3e-102 374.0 258 66.7
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.2e-101 373.6 261 66.7
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.2e-101 373.6 261 66.7
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.1e-101 372.9 279 64.5
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 2.7e-101 372.5 261 69.0
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 3.5e-101 372.1 256 68.0
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 4.6e-101 371.7 258 67.4
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 4.6e-101 371.7 258 66.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 7.8e-101 370.9 257 67.7
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 1.0e-100 370.5 257 67.3
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 3.0e-100 369.0 261 66.7
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.6e-100 367.9 257 67.3
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 1.1e-99 367.1 257 66.9
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.5e-99 366.7 257 67.7
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 1.5e-99 366.7 259 67.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.9e-99 366.3 258 65.1
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.9e-99 366.3 221 77.8
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 1.9e-99 366.3 257 65.0
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.5e-99 365.9 258 66.7
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 4.3e-99 365.2 296 60.5
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 1.3e-98 363.6 257 66.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.3e-98 363.6 253 67.2
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.6e-98 363.2 251 67.7
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.1e-98 362.8 257 66.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.8e-97 359.8 261 64.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.8e-97 359.8 258 64.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 9.0e-97 357.5 257 65.4
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-96 355.9 222 72.5
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.6e-96 355.9 222 72.5
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 2.2e-95 352.8 258 65.1
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 8.4e-95 350.9 219 73.1
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 4.2e-94 348.6 257 63.8
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 5.4e-94 348.2 258 63.6
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.4e-94 348.2 241 68.0
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 7.1e-94 347.8 238 67.6
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 1.2e-93 347.1 257 63.8
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-93 346.7 260 64.2
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 3.5e-93 345.5 258 62.8
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 4.6e-93 345.1 258 62.8
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 4.6e-93 345.1 258 62.4
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.6e-93 345.1 238 67.2
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 1.0e-92 344.0 258 62.0
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.8e-92 343.2 241 65.6
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.0e-92 342.4 271 59.8
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.1e-91 340.5 263 60.8
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 5.6e-91 338.2 280 56.8
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 5.6e-91 338.2 257 60.7
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.6e-90 336.7 260 61.5
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.1e-90 336.3 237 64.6
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 4.0e-89 332.0 257 59.9
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 6.9e-89 331.3 239 64.9
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.9e-89 331.3 237 63.3
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 9.0e-89 330.9 258 61.6
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.4e-88 328.9 254 62.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 3.8e-87 325.5 289 57.8
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 3.8e-87 325.5 278 55.0
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 6.4e-87 324.7 260 62.3
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.4e-86 323.6 233 67.8
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.2e-86 322.4 324 50.6
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 4.2e-86 322.0 235 62.6
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 1.2e-85 320.5 299 52.8
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 2.1e-85 319.7 200 73.5
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 6.0e-85 318.2 219 66.2
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.3e-84 317.0 259 59.1
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 8.7e-84 314.3 257 57.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 8.2e-82 307.8 257 58.0
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-81 307.4 213 67.1
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 4.5e-80 302.0 221 58.8
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 4.5e-80 302.0 273 54.2
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.6e-80 301.2 259 55.2
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.9e-79 299.3 259 57.1
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.8e-74 282.7 220 60.9
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 3.4e-72 275.8 301 48.8
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 4.5e-72 275.4 227 58.6
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.5e-72 275.4 200 64.5
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 8.5e-71 271.2 183 67.8
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 9.3e-70 267.7 222 59.0
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 1.6e-69 266.9 264 52.3
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 2.1e-69 266.5 180 67.2
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 5.7e-67 258.5 186 66.7
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.0e-64 250.0 185 63.8
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 1.1e-62 244.2 149 79.9
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 2.7e-61 239.6 225 54.2
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 1.8e-60 236.9 166 72.3
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 3.9e-60 235.7 173 65.9
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 3.3e-59 232.6 196 55.6
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 5.7e-59 231.9 170 64.1
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 6.3e-58 228.4 191 57.1
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 9.4e-54 214.5 224 49.6
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 1.6e-53 213.8 185 54.6
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 2.1e-53 213.4 186 54.3
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 2.7e-53 213.0 220 50.9
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 7.9e-53 211.5 214 45.3
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 1.8e-52 210.3 270 42.2
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 8.8e-52 208.0 141 63.8
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 2.2e-50 203.4 130 71.5
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 9.1e-49 198.0 141 66.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 2.0e-48 196.8 151 61.6
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.9e-46 190.3 213 45.5
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 4.4e-43 179.1 130 64.6
MD06G1059000 Malus domestica HOM05D004561 ORTHO05D005315 9.7e-43 177.9 115 73.9
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 6.3e-42 175.3 126 62.7
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.4e-41 174.1 199 45.7
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 1.6e-37 160.6 220 40.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.1e-37 160.2 115 63.5
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.1e-33 147.9 86 79.1
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.4e-33 145.6 239 36.4
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 7.0e-33 145.2 86 77.9
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 9.1e-33 144.8 86 77.9
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.7e-32 143.3 86 75.6
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.9e-32 142.1 352 29.3
Sopen05g006540 Solanum pennellii HOM05D004561 ORTHO05D005315 1.9e-30 137.1 147 50.3
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 5.2e-28 129.0 256 31.2
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 1.2e-27 127.9 221 33.5
SalBow1G4548 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.6e-27 126.7 155 44.5
arahy.Tifrunner.gnm1.ann1.Y05SLV Arachis hypogaea HOM05D004561 ORTHO05D005315 9.8e-27 124.8 97 60.8
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.9e-23 113.2 63 73.0
Nitab4.5_0013603g0010 Nicotiana tabacum HOM05D004561 ORTHO05D005315 8.6e-23 111.7 72 69.4
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 5.6e-22 109.0 67 65.7
Solyc05g010730.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 5.6e-22 109.0 69 69.6
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.3e-22 108.6 67 68.7
MBI08_g32523_MAGBIO Magnolia biondii HOM05D004561 ORTHO05D005315 1.6e-21 107.5 75 64.0
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.1e-21 107.1 67 67.2
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 8.0e-21 105.1 81 56.8
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.4e-20 104.4 90 56.7
SEGI_12631 Sequoiadendron giganteum HOM05D004561 ORTHO05D005315 1.5e-19 100.9 74 59.5
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.1e-17 92.8 83 55.4
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 1.9e-14 84.0 89 48.3
SHI05852 Sapria himalayana HOM05D000002 ORTHO05D000001 2.3e-12 77.0 83 49.4
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 4.4e-11 72.8 84 51.2
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 6.4e-10 68.9 51 56.9
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.9e-09 67.4 48 64.6
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.6e-08 64.3 61 49.2
Cc05_g02560 Coffea canephora HOM05D004561 ORTHO05D005315 3.9e-07 59.7 74 44.6
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 5.0e-07 59.3 31 80.6
SHI05350 Sapria himalayana HOM05D004561 ORTHO05D005315 6.6e-07 58.9 153 26.1


User provided reference genes

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