Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1611.3 772 100.0
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1121.3 774 70.5
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1112.4 766 71.5
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1109.4 771 69.8
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1109.0 767 69.9
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1102.0 754 70.2
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1095.1 767 69.1
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1093.2 749 70.6
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 773 69.3
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1090.1 768 68.9
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 797 66.5
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1087.8 769 67.4
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1086.6 769 68.4
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1085.1 754 69.5
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1083.9 771 69.0
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1083.6 775 67.9
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 766 68.3
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1081.6 766 68.8
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1079.3 770 68.3
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 771 68.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1077.8 770 67.3
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 5.3e-312 1074.3 772 66.2
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 5.3e-312 1073.5 741 69.6
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 2.1e-311 1072.0 757 69.0
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 4.8e-311 1070.8 757 68.4
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 1.8e-310 1068.9 741 69.2
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 2.0e-309 1065.4 782 67.3
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 2.6e-309 1065.1 773 66.9
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 7.5e-309 1063.5 768 66.1
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 4.9e-308 1060.8 770 66.5
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 6.4e-308 1060.4 754 67.5
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 8.3e-308 1060.1 770 66.6
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 1.1e-307 1059.7 767 68.1
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 2.4e-307 1058.5 770 66.9
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 3.2e-307 1058.1 773 66.5
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 3.2e-307 1058.1 919 58.2
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.1e-307 1057.7 767 67.9
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 7.1e-307 1057.0 768 67.3
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 1.2e-306 1056.2 771 66.8
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.6e-306 1055.8 772 66.6
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 1.6e-306 1055.8 773 66.4
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 7.8e-306 1053.5 793 63.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 1.0e-305 1053.1 755 66.4
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 1.3e-305 1052.7 771 66.5
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 5.1e-305 1050.8 755 66.8
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 5.1e-305 1050.8 771 66.1
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 1.1e-304 1049.7 776 66.4
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 1.9e-304 1048.9 769 64.8
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 4.3e-304 1047.7 755 65.8
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 7.3e-304 1047.0 771 65.9
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 4.7e-303 1044.3 771 66.1
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 6.2e-303 1043.9 820 64.8
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 8.1e-303 1043.5 773 65.3
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 1.4e-302 1042.7 749 67.7
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 3.2e-299 1031.6 745 67.9
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 4.1e-299 1031.2 744 67.9
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.1e-298 1028.9 749 64.9
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 2.1e-298 1028.9 750 65.1
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 2.1e-298 1028.9 744 68.3
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 7.8e-298 1026.9 774 63.7
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 7.8e-298 1026.9 774 63.7
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 7.8e-298 1026.9 767 63.5
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 1.3e-297 1026.2 750 64.8
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 5.1e-297 1024.2 775 63.2
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 8.6e-297 1023.5 775 63.2
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 7.3e-296 1020.4 749 64.9
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 2.8e-295 1018.5 777 62.8
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 8.1e-295 1016.9 770 63.8
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 8.1e-295 1016.9 771 64.3
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 1.4e-294 1016.1 749 64.9
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 2.4e-294 1015.4 754 65.4
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.1e-294 1015.0 749 64.6
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 3.4e-293 1011.5 777 62.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 5.8e-293 1010.7 771 62.8
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.3e-292 1009.6 735 64.8
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.8e-287 991.1 882 57.9
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.1e-286 989.9 769 62.0
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 5.8e-285 984.2 771 63.0
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 3.0e-281 971.8 771 61.0
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 1.3e-279 966.5 696 67.8
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 6.9e-278 960.7 778 62.6
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 8.4e-276 953.7 810 59.5
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.6e-274 948.0 810 59.4
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 2.0e-269 932.6 692 65.9
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 4.5e-269 931.4 771 60.3
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 1.9e-267 926.0 683 67.6
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.7e-266 922.2 738 61.2
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 6.9e-262 907.5 682 66.1
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 3.4e-261 905.2 717 63.2
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 7.6e-261 904.0 688 65.3
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 3.0e-257 892.1 658 65.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 4.3e-256 888.3 689 62.0
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 4.8e-255 884.8 748 59.6
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 5.3e-254 881.3 687 63.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 1.5e-253 879.8 679 65.5
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.8e-249 866.3 774 57.6
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 2.8e-247 859.0 784 57.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 5.0e-244 848.2 750 58.5
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 2.9e-228 795.8 750 55.5
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.2e-226 790.4 770 50.8
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 2.7e-226 789.3 746 52.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 3.2e-219 765.8 443 81.0
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 5.0e-212 741.9 616 59.7
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 5.0e-212 741.9 774 49.4
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 1.1e-203 714.1 767 47.2
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.9e-201 704.5 422 76.5
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 9.2e-198 694.5 686 51.0
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 4.9e-183 645.6 354 84.2
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 4.9e-183 645.6 418 73.4
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 7.8e-181 638.3 528 60.2
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.1e-169 601.3 521 59.1
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 1.9e-118 431.0 259 78.0
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.7e-112 410.6 386 54.1
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 2.0e-107 394.4 606 39.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 1.1e-81 308.9 147 94.6
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 6.6e-79 299.7 266 56.4
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.8e-75 285.8 264 52.7
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 2.4e-73 281.2 178 72.5
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.6e-63 246.1 121 88.4
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 9.9e-51 206.1 160 60.0
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.2e-50 204.9 126 73.8
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 9.6e-46 189.5 105 81.9
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 1.7e-42 178.7 317 34.7
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 3.8e-42 177.6 276 38.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 2.4e-41 174.9 83 90.4
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 6.5e-34 150.2 103 69.9
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.2e-32 146.0 86 74.4
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 7.9e-32 143.3 181 43.6
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.5e-30 139.0 86 70.9
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.5e-30 139.0 86 70.9
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.8e-29 134.0 147 49.7
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 1.1e-28 132.9 66 92.4
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 1.2e-27 129.4 211 36.0
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 1.3e-23 115.9 73 80.8
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.4e-22 110.2 82 63.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.3e-21 109.4 51 92.2
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 1.1e-20 106.3 223 29.1
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.1e-20 103.2 55 80.0
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.1e-20 103.2 55 80.0
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 1.2e-19 102.8 398 23.6
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.0e-19 102.1 55 80.0
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 2.0e-19 102.1 453 22.5
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.9e-18 98.2 55 76.4
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.5e-17 94.0 78 56.4
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.5e-17 94.0 138 40.6
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 3.6e-16 91.3 79 57.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-15 89.0 50 78.0
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.8e-15 89.0 50 78.0
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 2.0e-14 85.5 75 56.0
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 3.2e-09 68.2 36 63.9
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 8.8e-07 60.1 261 23.4
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.1e-06 59.7 261 23.4


User provided reference genes

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