Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 1.2e-83 313.2 163 100.0
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 4.2e-52 208.4 159 72.3
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 1.4e-50 203.4 159 67.9
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 1.4e-50 203.4 156 69.2
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.0e-49 199.5 163 65.6
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 2.6e-49 199.1 153 70.6
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 3.7e-48 195.3 162 67.3
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 6.3e-48 194.5 160 63.8
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.8e-47 193.0 158 67.1
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 9.1e-47 190.7 127 74.8
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 1.6e-46 189.9 163 65.0
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 2.0e-46 189.5 163 63.8
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 2.6e-46 189.1 159 65.4
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.9e-46 188.0 125 74.4
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 1.3e-45 186.8 164 61.6
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 2.2e-45 186.0 156 64.7
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 2.9e-45 185.7 162 61.1
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.8e-45 185.3 127 72.4
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 5.0e-45 184.9 157 65.6
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 6.5e-45 184.5 157 65.0
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 6.5e-45 184.5 157 63.7
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 8.5e-45 184.1 157 64.3
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.9e-44 183.0 127 71.7
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.9e-44 183.0 127 71.7
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 4.2e-44 181.8 157 60.5
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 5.5e-44 181.4 163 62.6
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 1.2e-43 180.3 156 61.5
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 2.1e-43 179.5 152 62.5
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.1e-43 179.5 159 62.3
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 4.7e-43 178.3 154 59.7
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 6.1e-43 177.9 118 72.0
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 1.0e-42 177.2 123 69.1
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 1.0e-42 177.2 126 68.3
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 1.0e-42 177.2 126 69.0
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.4e-42 176.8 158 62.0
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.8e-42 176.4 127 68.5
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 2.3e-42 176.0 155 60.0
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.3e-42 176.0 162 59.3
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 3.0e-42 175.6 126 65.1
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 3.0e-42 175.6 121 70.2
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 3.0e-42 175.6 156 59.0
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 6.8e-42 174.5 155 61.3
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 8.8e-42 174.1 126 65.1
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 8.8e-42 174.1 150 58.7
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 8.8e-42 174.1 124 71.0
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 1.2e-41 173.7 122 69.7
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 1.2e-41 173.7 126 73.8
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 1.2e-41 173.7 162 60.5
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.2e-41 173.7 160 59.4
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 1.5e-41 173.3 160 58.8
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 3.4e-41 172.2 121 66.9
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 3.4e-41 172.2 116 73.3
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 5.7e-41 171.4 122 66.4
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 5.7e-41 171.4 162 59.9
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 7.5e-41 171.0 122 69.7
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 1.3e-40 170.2 136 62.5
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 2.2e-40 169.5 122 65.6
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 2.8e-40 169.1 159 58.5
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 2.8e-40 169.1 159 58.5
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 6.3e-40 167.9 136 61.0
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 1.1e-39 167.2 126 63.5
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 1.1e-39 167.2 133 61.7
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 4.1e-39 165.2 121 65.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 4.1e-39 165.2 121 65.3
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 5.3e-39 164.9 158 57.0
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 5.3e-39 164.9 161 59.0
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 1.2e-38 163.7 158 60.1
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 1.2e-38 163.7 133 60.9
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 1.6e-38 163.3 133 58.6
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 2.0e-38 162.9 152 55.3
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 2.7e-38 162.5 122 63.1
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 5.9e-38 161.4 157 55.4
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 1.0e-37 160.6 157 54.8
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 1.3e-37 160.2 153 55.6
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 2.2e-37 159.5 121 64.5
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 2.2e-37 159.5 158 55.1
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 2.9e-37 159.1 127 62.2
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 2.9e-37 159.1 157 55.4
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 3.8e-37 158.7 133 56.4
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 5.0e-37 158.3 152 55.3
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 6.5e-37 157.9 124 60.5
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 6.5e-37 157.9 122 60.7
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 1.1e-36 157.1 158 55.1
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 1.9e-36 156.4 158 53.8
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 3.2e-36 155.6 157 54.1
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 3.2e-36 155.6 123 59.3
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 4.2e-36 155.2 152 53.9
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 5.5e-36 154.8 157 54.8
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 5.5e-36 154.8 156 53.8
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 7.2e-36 154.5 152 53.9
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 7.2e-36 154.5 152 53.9
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 5.2e-34 148.3 155 51.6
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 2.0e-33 146.4 105 68.6
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 9.8e-33 144.1 137 54.7
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 9.8e-33 144.1 123 56.9
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 1.1e-31 140.6 107 66.4
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.9e-30 134.8 89 73.0
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 2.5e-28 129.4 150 46.0
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.2e-25 120.6 84 75.0
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 1.5e-25 120.2 96 64.6
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 4.4e-17 92.0 124 41.9
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 4.9e-16 88.6 77 61.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 3.2e-15 85.9 67 65.7
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 5.4e-15 85.1 109 44.0
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 6.0e-14 81.6 108 43.5
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 8.6e-13 77.8 58 67.2
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 3.3e-12 75.9 58 67.2
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 9.5e-12 74.3 109 37.6
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 1.8e-10 70.1 103 38.8
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.5e-09 67.0 119 31.1
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 2.6e-09 66.2 111 35.1
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 1.3e-08 63.9 114 35.1
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 1.1e-07 60.8 88 40.9
Pp3c7_26210 Physcomitrium patens HOM05D021038 ORTHO05D009018 1.1e-07 60.8 123 33.3
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 1.4e-07 60.5 104 33.7
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 2.4e-07 59.7 107 34.6
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 3.2e-07 59.3 56 50.0
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 4.1e-07 58.9 87 36.8
Pp3c1_6510 Physcomitrium patens HOM05D021038 ORTHO05D009018 4.1e-07 58.9 103 34.0
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 5.4e-07 58.5 87 36.8
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 5.4e-07 58.5 116 31.0
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 5.4e-07 58.5 87 40.2
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 7.1e-07 58.2 87 37.9
COL.COLO4_17266 Corchorus olitorius HOM05D006293 ORTHO05D007971 1.2e-06 57.4 109 35.8
unitig_747.g21612 Utricularia gibba HOM05D003750 ORTHO05D004337 1.2e-06 57.4 122 30.3
Gohir.A01G164300 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.6e-06 57.0 92 38.0
Gohir.D01G156200 Gossypium hirsutum HOM05D006293 ORTHO05D007971 1.6e-06 57.0 92 38.0
Gorai.002G193700 Gossypium raimondii HOM05D006293 ORTHO05D007971 1.6e-06 57.0 92 38.0
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 2.1e-06 56.6 87 33.3
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 2.1e-06 56.6 88 36.4
Thecc.02G066200 Theobroma cacao HOM05D006293 ORTHO05D007971 2.1e-06 56.6 109 35.8
Gohir.1Z049391 Gossypium hirsutum HOM05D006293 ORTHO05D007971 2.7e-06 56.2 80 40.0
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.7e-06 56.2 87 37.9
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 2.7e-06 56.2 87 35.6
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 2.7e-06 56.2 110 33.6
Ah.01g009070 Amaranthus hybridus HOM05D006293 ORTHO05D007971 3.5e-06 55.8 111 34.2
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 3.5e-06 55.8 87 39.1
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 3.5e-06 55.8 88 35.2
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 3.5e-06 55.8 87 35.6
Zm00001eb239390 Zea mays HOM05D003750 ORTHO05D004337 3.5e-06 55.8 110 30.9
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.6e-06 55.5 107 32.7
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 4.6e-06 55.5 86 37.2
TWI31G0553 Tripterygium wilfordii HOM05D006293 ORTHO05D007971 4.6e-06 55.5 99 34.3
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 6.0e-06 55.1 109 34.9
unitig_46.g18277 Utricularia gibba HOM05D003750 ORTHO05D004337 6.0e-06 55.1 104 31.7
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 7.8e-06 54.7 73 41.1
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 7.8e-06 54.7 87 34.5
Migut.H02092 Erythranthe guttata HOM05D003750 ORTHO05D004337 7.8e-06 54.7 120 31.7
Sed0013297 Sechium edule HOM05D003750 ORTHO05D004337 7.8e-06 54.7 87 34.5
Sopen07g029310 Solanum pennellii HOM05D003750 ORTHO05D004337 7.8e-06 54.7 86 37.2
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 7.8e-06 54.7 88 35.2
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 7.8e-06 54.7 88 35.2
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 7.8e-06 54.7 107 32.7


User provided reference genes

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