Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p037524 Quercus lobata HOM05D006057 ORTHO05D007224 2.3e-61 238.8 131 100.0
Duzib138G1502 Durio zibethinus HOM05D006057 ORTHO05D007224 4.4e-44 181.4 135 73.3
COL.COLO4_23092 Corchorus olitorius HOM05D006057 ORTHO05D007224 2.9e-43 178.7 130 74.6
Haze_05170 Corylus avellana HOM05D006057 ORTHO05D007224 7.8e-41 170.6 115 80.9
Manes.05G006500 Manihot esculenta HOM05D006057 ORTHO05D007224 3.0e-40 168.7 134 69.4
Eucgr.A00985 Eucalyptus grandis HOM05D006057 ORTHO05D007224 2.5e-39 165.6 134 65.7
Atru.chr5.830 Acer truncatum HOM05D006057 ORTHO05D007224 3.3e-39 165.2 134 68.7
TAR633G2394 Trochodendron aralioides HOM05D006057 ORTHO05D007224 3.3e-39 165.2 134 72.4
Gorai.008G133300 Gossypium raimondii HOM05D006057 ORTHO05D007224 9.6e-39 163.7 136 69.9
Gohir.D12G122500 Gossypium hirsutum HOM05D006057 ORTHO05D007224 1.6e-38 162.9 136 69.9
Potri.014G110300 Populus trichocarpa HOM05D006057 ORTHO05D007224 2.8e-38 162.2 125 72.0
Sed0018142 Sechium edule HOM05D006057 ORTHO05D007224 1.2e-36 156.8 129 67.4
CSS0031729 Camellia sinensis var. sinensis HOM05D006057 ORTHO05D007224 2.0e-36 156.0 134 68.7
TWI14G0531 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 3.4e-36 155.2 134 68.7
Nn4g25242 Nelumbo nucifera HOM05D006057 ORTHO05D007224 9.9e-36 153.7 129 67.4
Prupe.3G028700 Prunus persica HOM05D006057 ORTHO05D007224 9.9e-36 153.7 133 64.7
ClCG10G013240 Citrullus lanatus HOM05D006057 ORTHO05D007224 1.3e-35 153.3 129 66.7
Sp6g39640 Schrenkiella parvula HOM05D006057 ORTHO05D007224 1.3e-35 153.3 132 65.2
MD17G1156700 Malus domestica HOM05D006057 ORTHO05D007224 1.7e-35 152.9 133 63.9
Gohir.A12G118700 Gossypium hirsutum HOM05D006057 ORTHO05D007224 2.9e-35 152.1 136 64.7
Glyma.10G140400 Glycine max HOM05D006057 ORTHO05D007224 3.8e-35 151.8 124 68.5
Aa31LG1G21980 Aethionema arabicum HOM05D006057 ORTHO05D007224 6.4e-35 151.0 133 64.7
Cpa.g.sc57.50 Carica papaya HOM05D006057 ORTHO05D007224 6.4e-35 151.0 135 64.4
GSVIVG01028268001 Vitis vinifera HOM05D006057 ORTHO05D007224 6.4e-35 151.0 118 73.7
RcHm_v2.0_Chr2g0148291 Rosa chinensis HOM05D006057 ORTHO05D007224 8.4e-35 150.6 133 61.7
Medtr1g085440 Medicago truncatula HOM05D006057 ORTHO05D007224 1.1e-34 150.2 123 68.3
arahy.Tifrunner.gnm1.ann1.78VVNS Arachis hypogaea HOM05D006057 ORTHO05D007224 1.4e-34 149.8 126 69.8
Medtr4g118050 Medicago truncatula HOM05D006057 ORTHO05D007224 1.4e-34 149.8 130 65.4
Lj5g0024678 Lotus japonicus HOM05D006057 ORTHO05D007224 1.9e-34 149.4 122 68.9
arahy.Tifrunner.gnm1.ann1.TF3SPP Arachis hypogaea HOM05D006057 ORTHO05D007224 3.2e-34 148.7 126 69.8
BcaB05g21854 Brassica carinata HOM05D006057 ORTHO05D007224 3.2e-34 148.7 132 62.9
Hma1.2p1_0350F.1_g132530 Hydrangea macrophylla HOM05D006057 ORTHO05D007224 3.2e-34 148.7 134 67.2
PGR042G0310 Punica granatum HOM05D006057 ORTHO05D007224 3.2e-34 148.7 131 61.1
TPR.G3097 Trifolium pratense HOM05D006057 ORTHO05D007224 4.2e-34 148.3 123 67.5
BraA02t04741Z Brassica rapa HOM05D006057 ORTHO05D007224 5.4e-34 147.9 132 62.1
Medtr1g085355 Medicago truncatula HOM05D006057 ORTHO05D007224 7.1e-34 147.5 131 65.6
Psat6g157560 Pisum sativum HOM05D006057 ORTHO05D007224 7.1e-34 147.5 132 62.9
MELO3C026900.2 Cucumis melo HOM05D006057 ORTHO05D007224 1.2e-33 146.7 129 65.1
Rhsim01G0001300 Rhododendron simsii HOM05D006057 ORTHO05D007224 1.2e-33 146.7 133 64.7
TWI59G0504 Tripterygium wilfordii HOM05D006057 ORTHO05D007224 1.6e-33 146.4 134 67.2
CsaV3_3G043390 Cucumis sativus L. HOM05D006057 ORTHO05D007224 2.1e-33 146.0 129 65.1
BcaC03g13034 Brassica carinata HOM05D006057 ORTHO05D007224 3.5e-33 145.2 132 60.6
BcaC03g13036 Brassica carinata HOM05D006057 ORTHO05D007224 3.5e-33 145.2 132 60.6
Sabra02G0131200 Salix brachista HOM05D006057 ORTHO05D007224 6.0e-33 144.4 125 68.0
vmacro02351 Vaccinium macrocarpon HOM05D006057 ORTHO05D007224 6.0e-33 144.4 133 63.2
Ca_10224_v3 Cicer arietinum L. HOM05D006057 ORTHO05D007224 7.9e-33 144.1 134 65.7
CANSAT25G1403 Cannabis sativa HOM05D006057 ORTHO05D007224 1.3e-32 143.3 130 65.4
Ciclev10023548m.g Citrus clementina HOM05D006057 ORTHO05D007224 1.3e-32 143.3 118 67.8
Phvul.007G207500 Phaseolus vulgaris HOM05D006057 ORTHO05D007224 1.7e-32 142.9 132 61.4
Lj1C4G2 Lonicera japonica HOM05D006057 ORTHO05D007224 3.0e-32 142.1 129 68.2
Thhalv10015298m.g Eutrema salsugineum HOM05D006057 ORTHO05D007224 5.1e-32 141.4 119 66.4
Gohir.A07G132650 Gossypium hirsutum HOM05D006057 ORTHO05D007224 5.1e-32 141.4 105 70.5
Lju2566A1T37 Lonicera japonica HOM05D006057 ORTHO05D007224 5.1e-32 141.4 129 65.1
AL6G12340 Arabidopsis lyrata HOM05D006057 ORTHO05D007224 8.7e-32 140.6 133 61.7
Lalb_Chr02g0147311 Lupinus albus HOM05D006057 ORTHO05D007224 8.7e-32 140.6 124 65.3
Oeu048368.1 Olea europaea HOM05D006057 ORTHO05D007224 8.7e-32 140.6 131 61.1
Nitab4.5_0002450g0080 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.1e-31 140.2 133 61.7
C02p00760 Brassica napus HOM05D006057 ORTHO05D007224 1.5e-31 139.8 132 59.8
BolC2t06074H Brassica oleracea HOM05D006057 ORTHO05D007224 1.5e-31 139.8 132 59.8
CARHR210270 Cardamine hirsuta HOM05D006057 ORTHO05D007224 1.5e-31 139.8 125 64.0
FvH4_6g36280 Fragaria vesca HOM05D006057 ORTHO05D007224 1.5e-31 139.8 127 61.4
Carub.0006s0184 Capsella rubella HOM05D006057 ORTHO05D007224 1.9e-31 139.4 133 61.7
CDE01G0754 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 1.9e-31 139.4 125 64.0
BcaC06g32028 Brassica carinata HOM05D006057 ORTHO05D007224 2.5e-31 139.0 134 60.4
VMungo0720G1137 Vigna mungo HOM05D006057 ORTHO05D007224 3.3e-31 138.7 96 75.0
MBI18_g03875_MAGBIO Magnolia biondii HOM05D006057 ORTHO05D007224 4.3e-31 138.3 133 59.4
Nitab4.5_0002046g0150 Nicotiana tabacum HOM05D006057 ORTHO05D007224 4.3e-31 138.3 133 61.7
AT5G03050 Arabidopsis thaliana HOM05D006057 ORTHO05D007224 9.6e-31 137.1 133 60.2
BraA10t45317Z Brassica rapa HOM05D006057 ORTHO05D007224 1.3e-30 136.7 134 59.0
BcaC06g32027 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-30 136.3 134 59.0
BcaNung04734 Brassica carinata HOM05D006057 ORTHO05D007224 1.6e-30 136.3 134 59.0
BolC9t60103H Brassica oleracea HOM05D006057 ORTHO05D007224 1.6e-30 136.3 134 59.0
SHI19776 Sapria himalayana HOM05D006057 ORTHO05D007224 1.6e-30 136.3 113 66.4
Sopen03g037330 Solanum pennellii HOM05D006057 ORTHO05D007224 3.6e-30 135.2 133 60.2
C09p73700 Brassica napus HOM05D006057 ORTHO05D007224 4.8e-30 134.8 134 59.0
BolC9t60100H Brassica oleracea HOM05D006057 ORTHO05D007224 4.8e-30 134.8 134 59.0
PGSC0003DMG400014183 Solanum tuberosum HOM05D006057 ORTHO05D007224 4.8e-30 134.8 133 60.2
Solyc03g118440.3 Solanum lycopersicum HOM05D006057 ORTHO05D007224 6.2e-30 134.4 133 60.2
Glyma.20G089200 Glycine max HOM05D006057 ORTHO05D007224 1.4e-29 133.3 132 60.6
Peaxi162Scf00314g00430 Petunia axillaris HOM05D006057 ORTHO05D007224 2.4e-29 132.5 133 59.4
Migut.L01023 Erythranthe guttata HOM05D006057 ORTHO05D007224 9.0e-29 130.6 132 57.6
Aqoxy5G02874 Aquilegia oxysepala HOM05D006057 ORTHO05D007224 1.2e-28 130.2 134 60.4
ECA238G2998 Erigeron canadensis HOM05D006057 ORTHO05D007224 2.0e-28 129.4 132 57.6
BcaNung05509 Brassica carinata HOM05D006057 ORTHO05D007224 2.6e-28 129.0 114 63.2
Actinidia21332 Actinidia chinensis HOM05D006057 ORTHO05D007224 5.8e-28 127.9 136 56.6
CAN.G843.33 Capsicum annuum HOM05D006057 ORTHO05D007224 5.8e-28 127.9 133 56.4
Migut.L00831 Erythranthe guttata HOM05D006057 ORTHO05D007224 9.9e-28 127.1 109 60.6
PSO339G1810 Papaver somniferum HOM05D006057 ORTHO05D007224 9.9e-28 127.1 128 60.2
HanXRQChr07g0194641 Helianthus annuus HOM05D006057 ORTHO05D007224 1.3e-27 126.7 132 58.3
Lsat_1_v5_gn_2_108401 Lactuca sativa HOM05D006057 ORTHO05D007224 1.3e-27 126.7 125 60.8
Migut.L00999 Erythranthe guttata HOM05D006057 ORTHO05D007224 1.7e-27 126.3 107 63.6
Nitab4.5_0001841g0090 Nicotiana tabacum HOM05D006057 ORTHO05D007224 2.2e-27 125.9 140 55.7
Hund22023 Selenicereus undatus HOM05D006057 ORTHO05D007224 3.8e-27 125.2 124 58.1
DCAR_012291 Daucus carota HOM05D006057 ORTHO05D007224 6.4e-27 124.4 131 55.0
DCAR_012292 Daucus carota HOM05D006057 ORTHO05D007224 8.4e-27 124.0 133 54.1
SGA_v2.0_scaffold36G14563 Striga asiatica HOM05D006057 ORTHO05D007224 8.4e-27 124.0 133 54.9
SGA_v2.0_scaffold38G15005 Striga asiatica HOM05D006057 ORTHO05D007224 5.5e-26 121.3 134 52.2
CiPaw.07G127700 Carya illinoinensis HOM05D006057 ORTHO05D007224 1.2e-25 120.2 115 64.3
PSO081G0045 Papaver somniferum HOM05D006057 ORTHO05D007224 1.6e-25 119.8 126 58.7
PSO170G4276 Papaver somniferum HOM05D006057 ORTHO05D007224 2.1e-25 119.4 123 56.9
EL10Ac4g10232 Beta vulgaris HOM05D006057 ORTHO05D007224 2.7e-25 119.0 132 53.0
Ah.06g194050 Amaranthus hybridus HOM05D006057 ORTHO05D007224 3.5e-25 118.6 128 54.7
AUR62000136 Chenopodium quinoa HOM05D006057 ORTHO05D007224 4.6e-25 118.2 112 56.2
Potri.002G184600 Populus trichocarpa HOM05D006057 ORTHO05D007224 7.9e-25 117.5 102 64.7
Nitab4.5_0010904g0040 Nicotiana tabacum HOM05D006057 ORTHO05D007224 1.0e-24 117.1 140 52.9
Ah.04g162100 Amaranthus hybridus HOM05D006057 ORTHO05D007224 1.3e-24 116.7 127 54.3
Sc09g0000780 Simmondsia chinensis HOM05D006057 ORTHO05D007224 1.8e-24 116.3 130 52.3
AUR62019316 Chenopodium quinoa HOM05D006057 ORTHO05D007224 3.0e-24 115.5 131 52.7
Cc08_g05070 Coffea canephora HOM05D006057 ORTHO05D007224 9.6e-23 110.5 97 62.9
unitig_26.g10007 Utricularia gibba HOM05D006057 ORTHO05D007224 4.8e-22 108.2 133 48.1
HPP92_026861 Vanilla planifolia HOM05D006057 ORTHO05D007224 9.0e-21 104.0 129 53.5
SEGI_31615 Sequoiadendron giganteum HOM05D006057 ORTHO05D007224 1.5e-20 103.2 92 59.8
CDE12G0816 Ceratophyllum demersum HOM05D006057 ORTHO05D007224 5.8e-20 101.3 191 40.3
Dinv05504 Davidia involucrata HOM05D006057 ORTHO05D007224 6.5e-19 97.8 90 68.9
ATR0019G040 Amborella trichopoda HOM05D006057 ORTHO05D007224 8.4e-19 97.4 110 54.5
Gorai.001G149000 Gossypium raimondii HOM05D006057 ORTHO05D007224 2.7e-17 92.4 69 69.6
BcaNung05508 Brassica carinata HOM05D006057 ORTHO05D007224 4.6e-17 91.7 117 48.7
Gohir.D07G136950 Gossypium hirsutum HOM05D006057 ORTHO05D007224 3.0e-16 89.0 69 69.6
TPR.G3076 Trifolium pratense HOM05D006057 ORTHO05D007224 8.7e-16 87.4 82 61.0
SMO361G0765 Selaginella moellendorffii HOM05D006057 ORTHO05D007224 1.3e-14 83.6 85 52.9
Zm00001eb000680 Zea mays HOM05D006057 ORTHO05D007224 2.4e-13 79.3 103 42.7
Os03g0108700 Oryza sativa ssp. japonica HOM05D006057 ORTHO05D007224 5.3e-13 78.2 88 46.6
Pp3c25_8550 Physcomitrium patens HOM05D006057 ORTHO05D007224 4.6e-09 65.1 124 33.9
CBR_g39249 Chara braunii HOM05D006057 ORTHO05D007224 6.7e-08 61.2 85 37.6
Mapoly0076s0084 Marchantia polymorpha HOM05D006057 ORTHO05D007224 1.3e-06 57.0 101 33.7
Ah.15g097910 Amaranthus hybridus HOM05D012832 ORTHO05D019522 3.7e-06 55.5 42 59.5
Ah.15g098350 Amaranthus hybridus HOM05D012832 ORTHO05D019522 3.7e-06 55.5 42 59.5
FAN02G2276 Fragaria x ananassa HOM05D029129 ORTHO05D029680 6.3e-06 54.7 77 51.9


User provided reference genes

Program Settings