Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
QL09p036643 Quercus lobata HOM05D007091 ORTHO05D008768 3.9e-148 528.1 265 100.0
Cfa020656 Carpinus fangiana HOM05D007091 ORTHO05D008768 1.4e-105 386.7 261 77.8
CiPaw.15G149800 Carya illinoinensis HOM05D007091 ORTHO05D008768 1.5e-99 366.7 261 72.4
Dinv32110 Davidia involucrata HOM05D007091 ORTHO05D008768 5.4e-97 358.2 252 74.6
Dinv01447 Davidia involucrata HOM05D007091 ORTHO05D008768 2.3e-95 352.8 253 72.7
MD06G1234100 Malus domestica HOM05D007091 ORTHO05D008768 8.0e-93 344.4 249 71.9
vmacro18668 Vaccinium macrocarpon HOM05D007091 ORTHO05D008768 2.3e-92 342.8 257 68.5
CSS0046666 Camellia sinensis var. sinensis HOM05D007091 ORTHO05D008768 2.6e-91 339.3 245 73.5
TWI15G0826 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 2.6e-91 339.3 262 67.9
RcHm_v2.0_Chr7g0177781 Rosa chinensis HOM05D007091 ORTHO05D008768 9.8e-91 337.4 237 71.3
FvH4_5g17800 Fragaria vesca HOM05D007091 ORTHO05D008768 1.3e-90 337.0 248 67.3
Prupe.5G238600 Prunus persica HOM05D007091 ORTHO05D008768 2.2e-90 336.3 249 69.5
FAN13G0023 Fragaria x ananassa HOM05D007091 ORTHO05D008768 3.7e-90 335.5 248 66.9
Haze_18937 Corylus avellana HOM05D007091 ORTHO05D008768 1.8e-89 333.2 223 78.5
TAR629G3120 Trochodendron aralioides HOM05D007091 ORTHO05D008768 3.1e-89 332.4 238 71.4
Ciclev10026363m.g Citrus clementina HOM05D007091 ORTHO05D008768 7.0e-89 331.3 246 69.9
Glyma.09G170700 Glycine max HOM05D007091 ORTHO05D008768 1.6e-88 330.1 250 67.2
Lalb_Chr22g0353631 Lupinus albus HOM05D007091 ORTHO05D008768 3.5e-88 328.9 260 65.4
Atru.chr9.1636 Acer truncatum HOM05D007091 ORTHO05D008768 5.9e-88 328.2 250 68.8
Actinidia34668 Actinidia chinensis HOM05D007091 ORTHO05D008768 1.3e-87 327.0 244 70.1
Hma1.2p1_0844F.1_g227450 Hydrangea macrophylla HOM05D007091 ORTHO05D008768 3.9e-87 325.5 254 70.1
Nn4g24542 Nelumbo nucifera HOM05D007091 ORTHO05D008768 8.6e-87 324.3 251 67.3
Aqoxy3G04057 Aquilegia oxysepala HOM05D007091 ORTHO05D008768 1.2e-85 320.5 248 66.5
VMungo0464G0064 Vigna mungo HOM05D007091 ORTHO05D008768 2.8e-85 319.3 247 65.6
Eucgr.H00567 Eucalyptus grandis HOM05D007091 ORTHO05D008768 3.6e-85 318.9 244 65.2
arahy.Tifrunner.gnm1.ann1.0PBM2M Arachis hypogaea HOM05D007091 ORTHO05D008768 8.9e-84 314.3 257 64.2
Ca_20293_v3 Cicer arietinum L. HOM05D007091 ORTHO05D008768 1.5e-83 313.5 253 65.6
TPR.G31708 Trifolium pratense HOM05D007091 ORTHO05D008768 1.5e-83 313.5 257 63.4
GSVIVG01000383001 Vitis vinifera HOM05D007091 ORTHO05D008768 2.0e-83 313.2 256 64.1
Potri.012G041400 Populus trichocarpa HOM05D007091 ORTHO05D008768 3.4e-83 312.4 251 66.9
Sabra12G0028500 Salix brachista HOM05D007091 ORTHO05D008768 1.7e-82 310.1 252 66.3
Peaxi162Scf01064g00022 Petunia axillaris HOM05D007091 ORTHO05D008768 4.9e-82 308.5 254 61.0
MD14G1240800 Malus domestica HOM05D007091 ORTHO05D008768 1.2e-80 303.9 227 70.5
arahy.Tifrunner.gnm1.ann1.M1K315 Arachis hypogaea HOM05D007091 ORTHO05D008768 2.7e-80 302.8 274 59.5
Cc04_g09250 Coffea canephora HOM05D007091 ORTHO05D008768 2.7e-80 302.8 243 65.8
Lj2g0019861 Lotus japonicus HOM05D007091 ORTHO05D008768 3.5e-80 302.4 241 64.3
FAN04G2000 Fragaria x ananassa HOM05D007091 ORTHO05D008768 1.1e-78 297.4 225 66.7
Gohir.D11G227400 Gossypium hirsutum HOM05D007091 ORTHO05D008768 1.1e-78 297.4 245 64.5
Sopen06g028870 Solanum pennellii HOM05D007091 ORTHO05D008768 1.1e-78 297.4 250 61.2
CANSAT35G2054 Cannabis sativa HOM05D007091 ORTHO05D008768 1.5e-78 297.0 243 63.0
CAN.G65.99 Capsicum annuum HOM05D007091 ORTHO05D008768 4.3e-78 295.4 257 59.9
Gorai.007G246600 Gossypium raimondii HOM05D007091 ORTHO05D008768 4.3e-78 295.4 245 63.7
Manes.14G173700 Manihot esculenta HOM05D007091 ORTHO05D008768 5.6e-78 295.0 239 65.3
COL.COLO4_24457 Corchorus olitorius HOM05D007091 ORTHO05D008768 2.1e-77 293.1 249 63.9
Solyc06g072500.2 Solanum lycopersicum HOM05D007091 ORTHO05D008768 2.8e-77 292.7 249 60.2
Medtr6g072100 Medicago truncatula HOM05D007091 ORTHO05D008768 3.6e-77 292.4 262 62.2
Gohir.A11G233700 Gossypium hirsutum HOM05D007091 ORTHO05D008768 8.0e-77 291.2 244 64.3
CDE07G0316 Ceratophyllum demersum HOM05D007091 ORTHO05D008768 1.4e-76 290.4 244 61.9
Duzib264G1108 Durio zibethinus HOM05D007091 ORTHO05D008768 1.4e-76 290.4 245 64.9
Nitab4.5_0005533g0060 Nicotiana tabacum HOM05D007091 ORTHO05D008768 4.4e-75 285.4 257 58.8
Thecc.03G065800 Theobroma cacao HOM05D007091 ORTHO05D008768 5.8e-75 285.0 249 62.2
Migut.I00575 Erythranthe guttata HOM05D007091 ORTHO05D008768 1.7e-74 283.5 245 61.2
ClCG04G012810 Citrullus lanatus HOM05D007091 ORTHO05D008768 2.9e-74 282.7 251 59.8
Nitab4.5_0000033g0140 Nicotiana tabacum HOM05D007091 ORTHO05D008768 6.4e-74 281.6 243 59.7
DCAR_004559 Daucus carota HOM05D007091 ORTHO05D009263 1.9e-73 280.0 259 59.1
Sc10g0009000 Simmondsia chinensis HOM05D007091 ORTHO05D008768 5.4e-73 278.5 244 59.8
MELO3C001924.2 Cucumis melo HOM05D007091 ORTHO05D008768 9.2e-73 277.7 251 57.8
Os05g0387800 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 1.6e-72 276.9 249 58.2
Lsat_1_v5_gn_2_11841 Lactuca sativa HOM05D007091 ORTHO05D008768 1.0e-71 274.2 249 60.2
Atru.chr9.1624 Acer truncatum HOM05D007091 ORTHO05D008768 1.4e-68 263.8 213 66.2
CsaV3_1G004900 Cucumis sativus L. HOM05D007091 ORTHO05D008768 1.5e-67 260.4 251 56.2
C08p18530 Brassica napus HOM05D007091 ORTHO05D008768 1.3e-66 257.3 243 58.4
BolC8t49485H Brassica oleracea HOM05D007091 ORTHO05D008768 2.2e-66 256.5 243 58.0
BraA08t34976Z Brassica rapa HOM05D007091 ORTHO05D008768 2.9e-66 256.1 243 58.8
HPP92_007322 Vanilla planifolia HOM05D007091 ORTHO05D008768 2.9e-66 256.1 241 59.8
ATR0598G099 Amborella trichopoda HOM05D007091 ORTHO05D008768 3.7e-66 255.8 201 64.2
Psat1g124480 Pisum sativum HOM05D007091 ORTHO05D008768 3.7e-66 255.8 205 66.3
SEGI_35239 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 3.7e-66 255.8 251 57.4
A08p30440 Brassica napus HOM05D007091 ORTHO05D008768 6.4e-66 255.0 264 55.3
Aa31LG7G2780 Aethionema arabicum HOM05D007091 ORTHO05D008768 8.3e-66 254.6 238 58.4
Thhalv10008624m.g Eutrema salsugineum HOM05D007091 ORTHO05D008768 1.1e-65 254.2 237 58.6
BcaC07g38895 Brassica carinata HOM05D007091 ORTHO05D008768 4.1e-65 252.3 238 58.8
SEGI_03292 Sequoiadendron giganteum HOM05D007091 ORTHO05D008768 5.4e-65 251.9 245 58.0
AL1G30710 Arabidopsis lyrata HOM05D007091 ORTHO05D008768 1.6e-64 250.4 237 59.5
Sp1g16300 Schrenkiella parvula HOM05D007091 ORTHO05D008768 2.7e-64 249.6 234 59.4
AT1G18335 Arabidopsis thaliana HOM05D007091 ORTHO05D008768 1.3e-63 247.3 239 57.7
HanXRQChr06g0179681 Helianthus annuus HOM05D007091 ORTHO05D008768 1.3e-63 247.3 251 55.0
BcaB03g12975 Brassica carinata HOM05D007091 ORTHO05D008768 2.3e-63 246.5 239 57.7
Mapoly0049s0094 Marchantia polymorpha HOM05D007091 ORTHO05D008768 3.3e-62 242.7 249 50.6
Carub.0001s1796 Capsella rubella HOM05D007091 ORTHO05D008768 2.1e-61 240.0 237 57.4
Oeu058744.1 Olea europaea HOM05D007091 ORTHO05D008768 4.7e-61 238.8 188 67.0
Zm00001eb256360 Zea mays HOM05D007091 ORTHO05D008768 8.1e-61 238.0 217 59.9
PSO421G0160 Papaver somniferum HOM05D007091 ORTHO05D008768 1.4e-60 237.3 236 57.2
CARHR018920 Cardamine hirsuta HOM05D007091 ORTHO05D008768 3.1e-60 236.1 238 56.7
Phvul.004G146400 Phaseolus vulgaris HOM05D007091 ORTHO05D008768 5.2e-60 235.3 183 63.9
SMO347G0535 Selaginella moellendorffii HOM05D007091 ORTHO05D008768 6.8e-60 235.0 234 54.3
EL10Ac1g00193 Beta vulgaris HOM05D007091 ORTHO05D008768 1.2e-59 234.2 194 61.9
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 2.0e-59 233.4 237 56.1
PSO384G3314 Papaver somniferum HOM05D007091 ORTHO05D008768 4.4e-59 232.3 239 56.9
MSTRG.11241 Avicennia marina HOM05D007091 ORTHO05D008768 1.3e-58 230.7 173 67.6
SGA_v2.0_scaffold40G15610 Striga asiatica HOM05D007091 ORTHO05D008768 2.9e-58 229.6 200 58.5
Hund27153 Selenicereus undatus HOM05D007091 ORTHO05D008768 1.4e-57 227.3 251 51.0
Os02g0772300 Oryza sativa ssp. japonica HOM05D007091 ORTHO05D008768 7.1e-57 224.9 200 57.0
Pp3c17_14350 Physcomitrium patens HOM05D007091 ORTHO05D008768 1.5e-51 207.2 203 56.2
SHI19106 Sapria himalayana HOM05D007091 ORTHO05D008768 7.6e-51 204.9 169 63.3
AUR62022670 Chenopodium quinoa HOM05D007091 ORTHO05D008768 1.3e-50 204.1 171 62.0
Sed0004344 Sechium edule HOM05D007091 ORTHO05D008768 6.4e-50 201.8 201 53.7
AUR62004555 Chenopodium quinoa HOM05D007091 ORTHO05D008768 1.1e-49 201.1 171 61.4
ECA238G0701 Erigeron canadensis HOM05D007091 ORTHO05D008768 1.1e-46 191.0 174 59.2
AagrBONN_evm.TU.Sc2ySwM_228.1246 Anthoceros agrestis HOM05D007091 ORTHO05D008768 4.3e-46 189.1 205 47.3
Lj9P415T25 Lonicera japonica HOM05D007091 ORTHO05D008768 1.1e-44 184.5 134 67.2
Pp3c9_11360 Physcomitrium patens HOM05D000137 ORTHO05D000382 1.5e-43 180.6 256 46.1
Pp3c15_11610 Physcomitrium patens HOM05D000137 ORTHO05D008768 1.7e-42 177.2 247 42.1
PGSC0003DMG401027044 Solanum tuberosum HOM05D007091 ORTHO05D008768 2.4e-41 173.3 157 57.3
MCO05G578 Micromonas commoda HOM05D007091 ORTHO05D008768 1.6e-32 144.1 240 38.8
CBR_g40646 Chara braunii HOM05D007091 ORTHO05D008768 5.7e-30 135.6 377 30.0
BcaC03g18194 Brassica carinata HOM05D007091 ORTHO05D008768 6.9e-28 128.6 124 54.8
unitig_21.g20331 Utricularia gibba HOM05D007091 ORTHO05D008768 6.9e-28 128.6 109 63.3
TWI81G1026 Tripterygium wilfordii HOM05D007091 ORTHO05D008768 2.1e-24 117.1 137 52.6
C02p62570 Brassica napus HOM05D001735 ORTHO05D001640 1.2e-19 101.3 81 64.2
BolC2t12316H Brassica oleracea HOM05D007091 ORTHO05D008768 3.8e-18 96.3 102 50.0
PSO832G1393 Papaver somniferum HOM05D007091 ORTHO05D008768 8.8e-15 85.1 93 53.8
MCO07G264 Micromonas commoda HOM05D007091 ORTHO05D008768 5.9e-11 72.4 155 31.0
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.7e-10 70.9 72 52.8
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 3.8e-10 69.7 61 60.7
MCO15G558 Micromonas commoda HOM05D007091 ORTHO05D008768 6.5e-10 68.9 172 28.5
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 5.5e-09 65.9 78 50.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 5.5e-09 65.9 78 50.0
Cre10.g431450 Chlamydomonas reinhardtii HOM05D007091 ORTHO05D008768 2.7e-08 63.5 204 26.5
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 3.9e-07 59.7 69 46.4


User provided reference genes

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